Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00279 * 2 1 4 4 H 1.48496 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46667 * 299.99388 * 3 2 1 6 6 H 1.48497 * 109.46919 * 59.99256 * 3 2 1 7 7 C 1.40058 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99784 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00261 * 359.97438 * 9 7 2 11 11 N 1.34782 * 119.99729 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99836 * 179.97438 * 11 9 7 13 13 H 1.09000 * 109.61806 * 34.76882 * 12 11 9 14 14 C 1.53177 * 109.54387 * 274.54648 * 12 11 9 15 15 C 1.53095 * 109.15074 * 183.13081 * 14 12 11 16 16 O 1.42900 * 109.43123 * 57.61145 * 15 14 12 17 17 C 1.42885 * 114.11941 * 298.88775 * 16 15 14 18 18 C 1.52984 * 109.51733 * 301.12341 * 17 16 15 19 19 C 1.52995 * 109.51223 * 299.75333 * 18 17 16 20 20 C 1.53002 * 109.47300 * 300.02586 * 19 18 17 21 21 C 1.53006 * 109.43909 * 60.04846 * 20 19 18 22 22 C 1.52981 * 109.52614 * 181.01755 * 17 16 15 23 23 C 1.53099 * 109.43610 * 61.08162 * 17 16 15 24 24 H 0.97003 * 119.99869 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99800 * 359.97438 * 11 9 7 26 26 H 1.09005 * 109.52156 * 303.02894 * 14 12 11 27 27 H 1.08996 * 109.52736 * 63.22418 * 14 12 11 28 28 H 1.09000 * 109.48070 * 177.59856 * 15 14 12 29 29 H 1.09000 * 109.48019 * 297.62501 * 15 14 12 30 30 H 1.09003 * 109.45902 * 179.74683 * 18 17 16 31 31 H 1.08998 * 109.46436 * 59.77757 * 18 17 16 32 32 H 1.08999 * 109.47231 * 180.02562 * 19 18 17 33 33 H 1.09005 * 109.46732 * 60.02882 * 19 18 17 34 34 H 1.09002 * 109.47794 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47814 * 300.05811 * 20 19 18 36 36 H 1.08995 * 109.47064 * 59.95037 * 21 20 19 37 37 H 1.09007 * 109.47093 * 179.97438 * 21 20 19 38 38 H 1.09010 * 109.46288 * 180.24927 * 22 17 16 39 39 H 1.08996 * 109.46799 * 300.23131 * 22 17 16 40 40 H 1.09001 * 109.51721 * 62.34272 * 23 17 16 41 41 H 1.08998 * 109.51995 * 182.46010 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3462 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8819 2.3964 1.2124 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0005 12 6 1.2163 -4.9165 0.0011 13 1 0.3027 -4.8118 -0.5841 14 6 0.8615 -5.3027 1.4403 15 6 0.1659 -6.6665 1.4374 16 8 1.0217 -7.6354 0.8286 17 6 1.3501 -7.3511 -0.5327 18 6 0.0669 -7.2686 -1.3615 19 6 -0.6741 -8.6052 -1.2906 20 6 0.2212 -9.7148 -1.8458 21 6 1.5032 -9.7984 -1.0148 22 6 2.2448 -8.4621 -1.0855 23 6 2.0927 -6.0145 -0.6091 24 1 -0.4850 0.8401 -0.0004 25 1 2.9188 -3.6478 0.0002 26 1 1.7719 -5.3594 2.0372 27 1 0.1929 -4.5536 1.8643 28 1 -0.0509 -6.9662 2.4627 29 1 -0.7648 -6.5986 0.8740 30 1 0.3183 -7.0472 -2.3988 31 1 -0.5708 -6.4781 -0.9659 32 1 -1.5880 -8.5458 -1.8817 33 1 -0.9260 -8.8264 -0.2534 34 1 -0.3069 -10.6671 -1.7958 35 1 0.4740 -9.4932 -2.8826 36 1 1.2502 -10.0190 0.0222 37 1 2.1412 -10.5891 -1.4097 38 1 2.4983 -8.2419 -2.1227 39 1 3.1579 -8.5217 -0.4933 40 1 3.0278 -6.0851 -0.0534 41 1 2.3054 -5.7751 -1.6510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334494446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = -135.992506 kcal Electronic energy + Delta-G solvation = -21510.160960 eV Core-core repulsion = 18387.560203 eV Total energy + Delta-G solvation = -3122.600757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61608 -39.34152 -37.32204 -35.73365 -34.54522 -32.69919 -32.29611 -31.49173 -28.70631 -27.63619 -24.80363 -23.97525 -23.21453 -21.67606 -20.98696 -20.21303 -19.15440 -17.51789 -17.38304 -16.88226 -16.21781 -16.04653 -15.83974 -15.63278 -15.12905 -14.86442 -14.44248 -14.26942 -14.19462 -13.97265 -13.32481 -13.12709 -13.10754 -13.03032 -12.82560 -12.65004 -12.49801 -12.34016 -12.00284 -11.97944 -11.89192 -11.70023 -11.38715 -11.22916 -10.96070 -10.70194 -10.39424 -9.80956 -9.47065 -8.30244 -6.87158 1.38726 1.38882 1.56836 2.23223 2.46067 2.78359 3.05602 3.56447 3.63477 3.78087 3.86932 3.94846 4.05536 4.14291 4.24656 4.29606 4.37219 4.43737 4.57931 4.62037 4.62567 4.69961 4.78011 4.78741 4.88930 5.00904 5.08665 5.14675 5.15423 5.24755 5.30440 5.30727 5.34353 5.37279 5.46127 5.61436 5.87351 6.22346 6.29094 6.32434 6.85615 7.54631 8.48824 8.66565 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.004266 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.780921 B = 6562.155640 C = 6632.316443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.751 5.751 12 C 0.154 3.846 13 H 0.044 0.956 14 C -0.157 4.157 15 C 0.071 3.929 16 O -0.369 6.369 17 C 0.126 3.874 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.100 4.100 23 C -0.138 4.138 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -17.376 -2.247 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.404 5.404 12 C 0.048 3.952 13 H 0.062 0.938 14 C -0.196 4.196 15 C -0.006 4.006 16 O -0.289 6.289 17 C 0.086 3.914 18 C -0.187 4.187 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.176 4.176 24 H 0.084 0.916 25 H 0.226 0.774 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.107 -17.469 -2.163 18.075 hybrid contribution 0.163 1.505 0.064 1.516 sum 4.269 -15.963 -2.099 16.657 Atomic orbital electron populations 1.70195 1.09521 1.28826 1.36602 1.26965 0.95514 1.04924 0.91181 0.84974 0.79337 0.75435 0.78547 1.17037 1.19284 1.19368 1.21479 0.94693 0.90226 1.54778 0.89612 1.18593 0.86877 0.84331 0.75880 1.90544 1.16117 1.87926 1.57141 1.45906 1.09063 1.04598 1.80860 1.20632 0.95221 0.84179 0.95142 0.93771 1.22518 1.01198 0.97802 0.98102 1.22480 0.92282 0.86840 0.99025 1.87886 1.68139 1.47316 1.25510 1.21476 0.94092 0.93654 0.82157 1.22180 0.97236 0.98525 1.00737 1.21438 0.98246 0.93927 1.01401 1.21528 0.95988 0.98247 0.99466 1.21448 0.96534 0.96394 1.00607 1.21549 0.97492 0.93393 1.01317 1.22425 0.99244 0.94004 1.01954 0.91617 0.77380 0.91127 0.94167 0.87189 0.93433 0.90718 0.93581 0.91826 0.92291 0.90949 0.91510 0.92183 0.90355 0.89496 0.90813 0.89990 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.87 11.83 21.84 0.26 -50.61 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 1.00 41.34 29.56 68.60 2.03 43.37 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.58 -33.06 9.54 24.83 0.24 -32.82 16 8 H 0.09 4.44 7.85 -2.91 -0.02 4.41 16 9 C 0.54 31.74 7.72 86.36 0.67 32.41 16 10 O -0.63 -42.67 14.68 -4.32 -0.06 -42.74 16 11 N -0.75 -34.49 5.08 -446.26 -2.27 -36.76 16 12 C 0.15 6.09 2.23 45.11 0.10 6.19 16 13 H 0.04 2.05 6.06 -2.39 -0.01 2.04 16 14 C -0.16 -5.82 5.72 30.69 0.18 -5.64 16 15 C 0.07 2.12 6.51 72.01 0.47 2.59 16 16 O -0.37 -10.28 8.92 -148.98 -1.33 -11.61 16 17 C 0.13 3.22 0.68 -10.77 -0.01 3.22 16 18 C -0.15 -3.89 4.03 30.59 0.12 -3.77 16 19 C -0.11 -2.42 5.78 30.59 0.18 -2.25 16 20 C -0.11 -1.96 5.93 30.60 0.18 -1.78 16 21 C -0.11 -1.95 5.78 30.59 0.18 -1.77 16 22 C -0.10 -1.96 4.94 30.59 0.15 -1.81 16 23 C -0.14 -4.06 4.39 30.68 0.13 -3.93 16 24 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 25 H 0.39 15.67 8.59 -92.71 -0.80 14.87 16 26 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.05 1.47 6.35 -2.39 -0.02 1.45 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.46 4.98 -2.39 -0.01 1.45 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.36 7.69 -2.38 -0.02 1.34 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.18 7.69 -2.39 -0.02 1.17 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.51 315.34 1.90 -72.61 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.22 Total: 33.00 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 3.05 Total: -7.26 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -2.01 Total: -87.37 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -1.39 Total: -54.35 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -74.51 1.90 -72.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334494446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.383 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds