Wall clock time and date at job start Mon Mar 30 2020 01:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48504 * 109.46920 * 270.00178 * 3 2 1 5 5 H 1.48502 * 109.47010 * 29.99789 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00200 * 3 2 1 7 7 C 1.40045 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99809 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99938 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99760 * 179.97438 * 11 9 7 13 13 H 1.08996 * 109.54546 * 325.18850 * 12 11 9 14 14 C 1.53188 * 109.54277 * 85.45066 * 12 11 9 15 15 C 1.53089 * 109.17461 * 176.83234 * 14 12 11 16 16 O 1.42913 * 109.42838 * 302.41983 * 15 14 12 17 17 C 1.42888 * 114.08594 * 61.12966 * 16 15 14 18 18 C 1.52969 * 109.52643 * 178.85657 * 17 16 15 19 19 C 1.52994 * 109.49890 * 299.81514 * 18 17 16 20 20 C 1.53000 * 109.47578 * 300.03109 * 19 18 17 21 21 C 1.53005 * 109.45149 * 60.02558 * 20 19 18 22 22 C 1.52988 * 109.46844 * 299.96480 * 21 20 19 23 23 C 1.53093 * 109.42789 * 298.83250 * 17 16 15 24 24 H 0.97000 * 120.00163 * 359.97438 * 1 2 3 25 25 H 0.96995 * 120.00063 * 0.02562 * 11 9 7 26 26 H 1.08994 * 109.51258 * 56.91925 * 14 12 11 27 27 H 1.09004 * 109.52225 * 296.74411 * 14 12 11 28 28 H 1.09002 * 109.47989 * 182.43079 * 15 14 12 29 29 H 1.08995 * 109.47971 * 62.41234 * 15 14 12 30 30 H 1.09006 * 109.46899 * 59.82405 * 18 17 16 31 31 H 1.09003 * 109.46941 * 179.80924 * 18 17 16 32 32 H 1.09005 * 109.47670 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.46987 * 60.03305 * 19 18 17 34 34 H 1.09004 * 109.47675 * 300.02930 * 20 19 18 35 35 H 1.09000 * 109.47724 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47179 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.47333 * 59.96548 * 21 20 19 38 38 H 1.09001 * 109.46604 * 299.97939 * 22 21 20 39 39 H 1.08999 * 109.46847 * 179.97438 * 22 21 20 40 40 H 1.08992 * 109.52463 * 177.54805 * 23 17 16 41 41 H 1.09005 * 109.52470 * 297.68100 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4403 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 1 0.3042 -4.8104 0.5867 14 6 0.8608 -5.3033 -1.4388 15 6 0.1660 -6.6674 -1.4355 16 8 1.0228 -7.6358 -0.8268 17 6 1.3506 -7.3506 0.5344 18 6 2.2437 -8.4619 1.0889 19 6 1.5008 -9.7974 1.0174 20 6 0.2177 -9.7125 1.8466 21 6 -0.6757 -8.6019 1.2904 22 6 0.0667 -7.2661 1.3622 23 6 2.0937 -6.0142 0.6100 24 1 -0.4850 0.8400 0.0004 25 1 2.9191 -3.6476 -0.0002 26 1 1.7705 -5.3592 -2.0364 27 1 0.1912 -4.5545 -1.8623 28 1 -0.0509 -6.9674 -2.4608 29 1 -0.7646 -6.6000 -0.8720 30 1 3.1576 -8.5225 0.4979 31 1 2.4960 -8.2417 2.1262 32 1 2.1373 -10.5890 1.4130 33 1 1.2491 -10.0181 -0.0199 34 1 0.4693 -9.4913 2.8838 35 1 -0.3113 -10.6641 1.7960 36 1 -1.5902 -8.5413 1.8806 37 1 -0.9267 -8.8227 0.2529 38 1 0.3173 -7.0452 2.3997 39 1 -0.5696 -6.4750 0.9655 40 1 2.3063 -5.7740 1.6516 41 1 3.0289 -6.0854 0.0544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334494447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:15 Heat of formation + Delta-G solvation = -113.493559 kcal Electronic energy + Delta-G solvation = -21510.290872 eV Core-core repulsion = 18388.665742 eV Total energy + Delta-G solvation = -3121.625130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41035 -37.43139 -36.12366 -34.02377 -32.40069 -31.56615 -30.84913 -30.24083 -27.08621 -25.96795 -23.39587 -22.91394 -21.99454 -20.20024 -19.40679 -18.99246 -17.17470 -16.18913 -15.68212 -15.41286 -14.88225 -14.67035 -14.41563 -14.17138 -13.80087 -13.51722 -13.23171 -12.90861 -12.43117 -12.22946 -12.21449 -12.12254 -11.86668 -11.41288 -11.18670 -11.10779 -11.03055 -10.91084 -10.60070 -10.52122 -10.46862 -10.31395 -10.25626 -10.20809 -9.51106 -9.17893 -8.85300 -7.60130 -7.49445 -6.18459 -4.64146 3.13707 3.20596 3.23941 3.94033 4.10202 4.57053 4.60640 4.74726 4.79501 4.92395 5.14984 5.16938 5.29810 5.33711 5.41264 5.53245 5.60995 5.62072 5.66463 5.73879 5.76817 5.81807 5.87679 5.97739 6.02743 6.03082 6.16489 6.22504 6.23872 6.26303 6.35200 6.40460 6.50886 6.66075 6.83229 7.43221 7.51775 7.93977 8.12141 8.33946 9.02628 9.54941 10.60224 10.79053 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041243 B = 0.004267 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.735102 B = 6560.742064 C = 6631.096835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.157 3.843 13 H 0.077 0.923 14 C -0.163 4.163 15 C 0.062 3.938 16 O -0.372 6.372 17 C 0.127 3.873 18 C -0.102 4.102 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.148 4.148 24 H 0.268 0.732 25 H 0.379 0.621 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -16.285 1.803 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.050 3.950 13 H 0.095 0.905 14 C -0.203 4.203 15 C -0.015 4.015 16 O -0.291 6.291 17 C 0.087 3.913 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.186 4.186 23 C -0.187 4.187 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.947 -16.318 1.723 16.524 hybrid contribution 0.851 1.212 0.060 1.482 sum 2.798 -15.107 1.782 15.467 Atomic orbital electron populations 1.70022 1.07032 1.27201 1.35459 1.25698 0.94601 1.00243 0.92608 0.86391 0.80166 0.81476 0.78821 1.19761 1.20467 1.18938 1.20900 0.93572 0.89492 1.54378 0.91519 1.18215 0.87229 0.82469 0.76163 1.90589 1.14042 1.86838 1.54923 1.46192 1.08402 1.04683 1.82311 1.20501 0.95798 0.84305 0.94378 0.90493 1.22623 1.01497 0.96881 0.99259 1.22566 0.92819 0.88503 0.97646 1.87876 1.68367 1.47995 1.24895 1.21325 0.93758 0.93685 0.82519 1.21510 0.97889 0.93926 1.00651 1.21455 0.96243 0.96544 1.01032 1.21528 0.96336 0.98407 0.99251 1.21450 0.97785 0.94449 1.01556 1.22198 0.97470 0.98189 1.00792 1.22477 0.99562 0.94711 1.01916 0.92157 0.78975 0.91813 0.90391 0.89425 0.93001 0.91366 0.90880 0.92469 0.91144 0.92337 0.92386 0.92344 0.91506 0.91117 0.90729 0.90939 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.83 55.55 0.66 -22.42 16 2 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 3 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.49 9.54 -35.63 -0.34 -15.83 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 C 0.56 15.75 7.72 -12.99 -0.10 15.65 16 10 O -0.58 -18.63 14.68 5.19 0.08 -18.55 16 11 N -0.76 -17.07 5.08 -55.03 -0.28 -17.35 16 12 C 0.16 3.00 2.23 -67.74 -0.15 2.85 16 13 H 0.08 1.68 6.05 -51.93 -0.31 1.36 16 14 C -0.16 -2.93 5.72 -26.59 -0.15 -3.09 16 15 C 0.06 0.92 6.51 37.20 0.24 1.16 16 16 O -0.37 -5.42 8.92 -35.23 -0.31 -5.73 16 17 C 0.13 1.71 0.68 -90.59 -0.06 1.65 16 18 C -0.10 -1.15 4.94 -26.75 -0.13 -1.28 16 19 C -0.12 -1.18 5.78 -26.73 -0.15 -1.33 16 20 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 21 C -0.11 -1.31 5.78 -26.73 -0.15 -1.46 16 22 C -0.15 -1.97 4.03 -26.74 -0.11 -2.07 16 23 C -0.15 -2.25 4.39 -26.59 -0.12 -2.36 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 25 H 0.38 7.57 8.58 -40.82 -0.35 7.22 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.77 6.34 -51.93 -0.33 0.44 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.13 4.97 -51.93 -0.26 0.87 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -32.97 315.31 -8.29 -41.26 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.67 Total: 7.93 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.48 Total: -5.07 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.38 Total: -39.77 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.24 Total: -24.28 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.97 -8.29 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334494447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.233 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds