Wall clock time and date at job start Mon Mar 30 2020 01:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48504 * 109.46920 * 270.00178 * 3 2 1 5 5 H 1.48502 * 109.47010 * 29.99789 * 3 2 1 6 6 H 1.48496 * 109.47150 * 150.00200 * 3 2 1 7 7 C 1.40045 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00066 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99809 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99938 * 180.02562 * 9 7 2 12 12 C 1.46504 * 119.99760 * 179.97438 * 11 9 7 13 13 H 1.08996 * 109.54546 * 325.18850 * 12 11 9 14 14 C 1.53188 * 109.54277 * 85.45066 * 12 11 9 15 15 C 1.53089 * 109.17461 * 176.83234 * 14 12 11 16 16 O 1.42913 * 109.42838 * 302.41983 * 15 14 12 17 17 C 1.42888 * 114.08594 * 61.12966 * 16 15 14 18 18 C 1.52969 * 109.52643 * 178.85657 * 17 16 15 19 19 C 1.52994 * 109.49890 * 299.81514 * 18 17 16 20 20 C 1.53000 * 109.47578 * 300.03109 * 19 18 17 21 21 C 1.53005 * 109.45149 * 60.02558 * 20 19 18 22 22 C 1.52988 * 109.46844 * 299.96480 * 21 20 19 23 23 C 1.53093 * 109.42789 * 298.83250 * 17 16 15 24 24 H 0.97000 * 120.00163 * 359.97438 * 1 2 3 25 25 H 0.96995 * 120.00063 * 0.02562 * 11 9 7 26 26 H 1.08994 * 109.51258 * 56.91925 * 14 12 11 27 27 H 1.09004 * 109.52225 * 296.74411 * 14 12 11 28 28 H 1.09002 * 109.47989 * 182.43079 * 15 14 12 29 29 H 1.08995 * 109.47971 * 62.41234 * 15 14 12 30 30 H 1.09006 * 109.46899 * 59.82405 * 18 17 16 31 31 H 1.09003 * 109.46941 * 179.80924 * 18 17 16 32 32 H 1.09005 * 109.47670 * 180.02562 * 19 18 17 33 33 H 1.08997 * 109.46987 * 60.03305 * 19 18 17 34 34 H 1.09004 * 109.47675 * 300.02930 * 20 19 18 35 35 H 1.09000 * 109.47724 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47179 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.47333 * 59.96548 * 21 20 19 38 38 H 1.09001 * 109.46604 * 299.97939 * 22 21 20 39 39 H 1.08999 * 109.46847 * 179.97438 * 22 21 20 40 40 H 1.08992 * 109.52463 * 177.54805 * 23 17 16 41 41 H 1.09005 * 109.52470 * 297.68100 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4403 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 1 0.3042 -4.8104 0.5867 14 6 0.8608 -5.3033 -1.4388 15 6 0.1660 -6.6674 -1.4355 16 8 1.0228 -7.6358 -0.8268 17 6 1.3506 -7.3506 0.5344 18 6 2.2437 -8.4619 1.0889 19 6 1.5008 -9.7974 1.0174 20 6 0.2177 -9.7125 1.8466 21 6 -0.6757 -8.6019 1.2904 22 6 0.0667 -7.2661 1.3622 23 6 2.0937 -6.0142 0.6100 24 1 -0.4850 0.8400 0.0004 25 1 2.9191 -3.6476 -0.0002 26 1 1.7705 -5.3592 -2.0364 27 1 0.1912 -4.5545 -1.8623 28 1 -0.0509 -6.9674 -2.4608 29 1 -0.7646 -6.6000 -0.8720 30 1 3.1576 -8.5225 0.4979 31 1 2.4960 -8.2417 2.1262 32 1 2.1373 -10.5890 1.4130 33 1 1.2491 -10.0181 -0.0199 34 1 0.4693 -9.4913 2.8838 35 1 -0.3113 -10.6641 1.7960 36 1 -1.5902 -8.5413 1.8806 37 1 -0.9267 -8.8227 0.2529 38 1 0.3173 -7.0452 2.3997 39 1 -0.5696 -6.4750 0.9655 40 1 2.3063 -5.7740 1.6516 41 1 3.0289 -6.0854 0.0544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334494447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:14 Heat of formation + Delta-G solvation = -135.919371 kcal Electronic energy + Delta-G solvation = -21511.263328 eV Core-core repulsion = 18388.665742 eV Total energy + Delta-G solvation = -3122.597586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61791 -39.34109 -37.31959 -35.73229 -34.54277 -32.69918 -32.29723 -31.49046 -28.70572 -27.63620 -24.80275 -23.97561 -23.21394 -21.67508 -20.98721 -20.21314 -19.15284 -17.51418 -17.38159 -16.88284 -16.22088 -16.04514 -15.83995 -15.63552 -15.12819 -14.86304 -14.43644 -14.26728 -14.19429 -13.97143 -13.32508 -13.13036 -13.10781 -13.03595 -12.80003 -12.64529 -12.49723 -12.33932 -12.04008 -11.98113 -11.89223 -11.69908 -11.38640 -11.22892 -10.94536 -10.70141 -10.39437 -9.81149 -9.47065 -8.29981 -6.87123 1.38762 1.40254 1.55527 2.23306 2.46197 2.78459 3.05616 3.56506 3.63533 3.78090 3.86940 3.94917 4.05494 4.14331 4.24642 4.29533 4.37247 4.43784 4.57921 4.62017 4.62565 4.69980 4.77992 4.78733 4.88948 5.00896 5.08665 5.14636 5.15437 5.24821 5.30317 5.30636 5.34393 5.37252 5.46129 5.61448 5.87261 6.22270 6.29043 6.32289 6.85609 7.54693 8.48878 8.66597 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041243 B = 0.004267 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.735102 B = 6560.742064 C = 6631.096835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.751 5.751 12 C 0.154 3.846 13 H 0.044 0.956 14 C -0.157 4.157 15 C 0.071 3.929 16 O -0.369 6.369 17 C 0.126 3.874 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.149 4.149 23 C -0.138 4.138 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -17.368 2.255 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.404 5.404 12 C 0.048 3.952 13 H 0.062 0.938 14 C -0.196 4.196 15 C -0.006 4.006 16 O -0.288 6.288 17 C 0.086 3.914 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.187 4.187 23 C -0.176 4.176 24 H 0.084 0.916 25 H 0.226 0.774 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.096 -17.459 2.175 18.065 hybrid contribution 0.174 1.501 -0.074 1.513 sum 4.271 -15.958 2.101 16.653 Atomic orbital electron populations 1.70192 1.09515 1.28887 1.36556 1.26962 0.95512 1.04914 0.91176 0.85026 0.78786 0.75108 0.79401 1.18665 1.19751 1.17219 1.21451 0.94699 0.90240 1.54848 0.89605 1.18586 0.86875 0.84324 0.75883 1.90545 1.16111 1.87927 1.57152 1.45905 1.09064 1.04600 1.80860 1.20639 0.95218 0.84175 0.95141 0.93766 1.22516 1.01196 0.97799 0.98099 1.22481 0.92279 0.86845 0.99029 1.87892 1.68090 1.47352 1.25508 1.21476 0.94094 0.93651 0.82165 1.21546 0.97505 0.93389 1.01307 1.21445 0.96520 0.96398 1.00618 1.21528 0.95991 0.98241 0.99469 1.21439 0.98244 0.93932 1.01400 1.22184 0.97232 0.98530 1.00743 1.22426 0.99239 0.94007 1.01953 0.91615 0.77383 0.91131 0.94171 0.87192 0.93420 0.90809 0.89496 0.90357 0.92184 0.91515 0.90952 0.91828 0.92287 0.90715 0.93574 0.90352 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.90 11.83 21.84 0.26 -50.65 16 2 C 0.03 1.65 5.50 85.30 0.47 2.12 16 3 Si 1.00 41.33 29.56 68.60 2.03 43.36 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.58 -33.09 9.54 24.83 0.24 -32.86 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 9 C 0.54 31.75 7.72 86.36 0.67 32.42 16 10 O -0.63 -42.68 14.68 -4.33 -0.06 -42.74 16 11 N -0.75 -34.49 5.08 -446.23 -2.27 -36.76 16 12 C 0.15 6.09 2.23 45.11 0.10 6.19 16 13 H 0.04 2.05 6.05 -2.39 -0.01 2.04 16 14 C -0.16 -5.82 5.72 30.69 0.18 -5.64 16 15 C 0.07 2.11 6.51 72.01 0.47 2.58 16 16 O -0.37 -10.28 8.92 -148.98 -1.33 -11.61 16 17 C 0.13 3.22 0.68 -10.77 -0.01 3.21 16 18 C -0.10 -1.96 4.94 30.58 0.15 -1.81 16 19 C -0.11 -1.95 5.78 30.59 0.18 -1.77 16 20 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 21 C -0.11 -2.43 5.78 30.59 0.18 -2.25 16 22 C -0.15 -3.90 4.03 30.59 0.12 -3.77 16 23 C -0.14 -4.06 4.39 30.69 0.13 -3.93 16 24 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 25 H 0.39 15.66 8.58 -92.71 -0.80 14.87 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.05 1.47 6.34 -2.39 -0.02 1.45 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.18 7.69 -2.39 -0.02 1.17 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.36 7.69 -2.39 -0.02 1.34 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.46 4.97 -2.39 -0.01 1.45 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -74.49 315.31 1.90 -72.58 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.22 Total: 33.10 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.05 Total: -7.28 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -2.01 Total: -87.40 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -1.39 Total: -54.35 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -74.49 1.90 -72.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334494447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.335 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds