Wall clock time and date at job start Mon Mar 30 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48507 * 109.46895 * 239.99483 * 3 2 1 5 5 H 1.48495 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47382 * 120.00048 * 3 2 1 7 7 C 1.37878 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47507 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.46140 * 184.99999 * 10 9 7 12 12 C 1.53190 * 109.31062 * 178.61143 * 11 10 9 13 13 N 1.46920 * 108.77469 * 54.63602 * 12 11 10 14 14 C 1.34774 * 120.63250 * 126.37201 * 13 12 11 15 15 O 1.21288 * 120.00050 * 5.71920 * 14 13 12 16 16 C 1.50706 * 120.00188 * 185.72941 * 14 13 12 17 17 O 1.42900 * 112.84927 * 45.65656 * 16 14 13 18 18 C 1.53786 * 113.68889 * 176.92964 * 16 14 13 19 19 C 1.53774 * 87.08141 * 89.12432 * 18 16 14 20 20 C 1.53778 * 113.61106 * 274.46120 * 16 14 13 21 21 C 1.46924 * 118.73934 * 306.63808 * 13 12 11 22 22 C 1.52760 * 109.00662 * 53.31133 * 21 13 12 23 23 H 0.97002 * 119.99604 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47217 * 59.99206 * 9 7 2 25 25 H 1.09004 * 109.47303 * 299.99782 * 9 7 2 26 26 H 1.08999 * 109.44418 * 304.96118 * 10 9 7 27 27 H 1.09003 * 109.49518 * 58.65809 * 11 10 9 28 28 H 1.09000 * 109.49353 * 298.56580 * 11 10 9 29 29 H 1.09003 * 109.58989 * 294.84482 * 12 11 10 30 30 H 1.09003 * 109.58774 * 174.42194 * 12 11 10 31 31 H 0.96701 * 113.99570 * 54.30586 * 17 16 14 32 32 H 1.09002 * 113.61207 * 203.67567 * 18 16 14 33 33 H 1.08995 * 113.61733 * 334.57225 * 18 16 14 34 34 H 1.09000 * 113.61772 * 270.88106 * 19 18 16 35 35 H 1.09000 * 113.61610 * 139.97761 * 19 18 16 36 36 H 1.09007 * 113.61546 * 25.34857 * 20 16 14 37 37 H 1.09001 * 113.61450 * 156.25194 * 20 16 14 38 38 H 1.09004 * 109.58825 * 173.15182 * 21 13 12 39 39 H 1.09004 * 109.58967 * 293.57140 * 21 13 12 40 40 H 1.09003 * 109.56260 * 185.55014 * 22 21 13 41 41 H 1.09004 * 109.35810 * 65.50117 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4837 -4.9838 -0.1252 12 6 2.4841 -6.1434 -0.1598 13 7 3.3501 -6.0562 1.0238 14 6 3.4913 -7.1112 1.8506 15 8 2.9849 -8.1761 1.5669 16 6 4.2784 -6.9676 3.1278 17 8 3.9494 -5.7803 3.8518 18 6 4.2843 -8.2369 3.9959 19 6 5.5338 -8.6721 3.2124 20 6 5.7907 -7.1794 2.9465 21 6 4.0547 -4.7952 1.2923 22 6 3.0411 -3.6525 1.3075 23 1 -0.4850 0.8401 -0.0004 24 1 0.6244 -2.5571 -0.8896 25 1 0.6239 -2.5568 0.8903 26 1 2.9285 -3.5553 -0.8418 27 1 0.8986 -4.9805 -1.0449 28 1 0.8180 -5.1028 0.7296 29 1 3.0911 -6.0757 -1.0626 30 1 1.9455 -7.0911 -0.1495 31 1 3.0061 -5.6843 4.0419 32 1 4.4762 -8.0432 5.0513 33 1 3.4204 -8.8813 3.8332 34 1 5.3077 -9.2434 2.3121 35 1 6.2965 -9.1426 3.8330 36 1 6.1429 -6.9701 1.9363 37 1 6.3944 -6.6966 3.7149 38 1 4.5523 -4.8535 2.2604 39 1 4.7925 -4.6152 0.5103 40 1 3.5646 -2.7016 1.4076 41 1 2.3608 -3.7841 2.1489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335501497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:53 Heat of formation + Delta-G solvation = -76.495346 kcal Electronic energy + Delta-G solvation = -21374.229093 eV Core-core repulsion = 18254.208326 eV Total energy + Delta-G solvation = -3120.020767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98480 -38.43214 -37.07811 -35.14260 -33.91890 -32.12643 -30.78408 -28.20148 -26.07198 -25.91399 -24.32947 -22.81949 -22.23126 -20.73133 -19.44902 -18.72834 -17.89651 -16.34492 -16.10964 -15.99601 -15.48066 -14.76597 -14.54451 -14.47089 -13.87253 -13.53238 -13.36645 -13.07532 -12.70234 -12.56196 -12.32767 -12.03842 -11.82930 -11.76669 -11.22357 -11.17937 -11.02479 -10.99316 -10.73850 -10.70041 -10.46774 -10.28032 -10.12966 -9.70794 -9.41661 -9.16794 -8.98752 -8.39308 -8.35113 -6.00704 -4.02768 2.48253 3.01752 3.31830 3.36954 3.38685 3.86431 4.30284 4.32714 4.44646 4.50299 4.64311 5.09573 5.28804 5.34657 5.39351 5.47361 5.47558 5.51764 5.56487 5.66451 5.69455 5.80322 5.86024 5.88604 6.00220 6.09694 6.13933 6.34498 6.39801 6.51797 6.65429 6.95778 6.99780 7.10784 7.29645 7.55084 7.65352 7.79942 7.98717 8.15748 8.41293 9.03434 9.61120 11.10553 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.004499 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.267944 B = 6222.103091 C = 6686.396777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.083 4.083 11 C -0.128 4.128 12 C 0.109 3.891 13 N -0.592 5.592 14 C 0.507 3.493 15 O -0.543 6.543 16 C 0.085 3.915 17 O -0.535 6.535 18 C -0.146 4.146 19 C -0.139 4.139 20 C -0.115 4.115 21 C 0.089 3.911 22 C -0.114 4.114 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.383 0.617 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -14.219 6.042 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.101 4.101 11 C -0.166 4.166 12 C -0.013 4.013 13 N -0.324 5.324 14 C 0.293 3.707 15 O -0.422 6.422 16 C 0.041 3.959 17 O -0.342 6.342 18 C -0.184 4.184 19 C -0.176 4.176 20 C -0.153 4.153 21 C -0.033 4.033 22 C -0.152 4.152 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.232 0.768 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.846 -14.549 5.835 18.512 hybrid contribution -0.266 1.116 -0.089 1.151 sum 9.580 -13.433 5.746 17.471 Atomic orbital electron populations 1.69952 1.06066 1.26650 1.50856 1.25013 0.94792 0.99167 0.95429 0.86705 0.79615 0.83369 0.78585 1.20313 1.21372 1.20241 1.21196 0.92888 0.90951 1.50462 0.92659 1.19114 0.93578 0.91035 0.97131 1.21220 0.98024 0.94530 0.96360 1.22022 0.97527 0.94879 1.02208 1.21726 0.92648 1.00225 0.86723 1.48189 1.45832 1.12998 1.25357 1.20631 0.80982 0.83890 0.85214 1.90668 1.49265 1.26949 1.75298 1.22792 0.96801 0.86433 0.89852 1.86536 1.30909 1.41241 1.75472 1.23440 0.99824 0.96087 0.99044 1.22710 0.97968 0.95800 1.01150 1.23061 0.92399 0.96620 1.03229 1.22224 0.95254 0.82978 1.02831 1.21762 0.97516 0.97290 0.98620 0.92995 0.96685 0.96666 0.92437 0.91108 0.92165 0.91741 0.89838 0.76793 0.88699 0.89934 0.89446 0.90499 0.90610 0.88126 0.87578 0.92167 0.89758 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.95 8.39 -34.44 -0.29 -14.24 16 8 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 10 C -0.08 -1.59 2.10 -90.58 -0.19 -1.78 16 11 C -0.13 -2.14 5.36 -26.61 -0.14 -2.29 16 12 C 0.11 1.63 6.42 -3.72 -0.02 1.61 16 13 N -0.59 -8.66 2.98 -173.03 -0.52 -9.17 16 14 C 0.51 7.38 6.77 -10.98 -0.07 7.30 16 15 O -0.54 -9.31 15.08 5.55 0.08 -9.23 16 16 C 0.09 1.00 0.99 -90.96 -0.09 0.91 16 17 O -0.53 -6.13 10.90 -35.23 -0.38 -6.51 16 18 C -0.15 -1.51 7.28 -25.92 -0.19 -1.70 16 19 C -0.14 -1.33 7.72 -25.92 -0.20 -1.53 16 20 C -0.12 -1.16 7.25 -25.92 -0.19 -1.35 16 21 C 0.09 1.26 5.99 -3.93 -0.02 1.24 16 22 C -0.11 -1.96 5.17 -26.84 -0.14 -2.10 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.28 7.04 -51.93 -0.37 0.91 16 31 H 0.38 3.67 9.08 45.56 0.41 4.09 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.95 7.48 -51.93 -0.39 0.56 16 34 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.11 1.40 4.58 -51.93 -0.24 1.17 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.57 6.91 -51.93 -0.36 1.21 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -30.76 322.52 -7.94 -38.69 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.93 Total: 2.78 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.77 Total: -11.84 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.30 Total: -15.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.76 -7.94 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335501497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.804 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds