Wall clock time and date at job start Mon Mar 30 2020 01:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48507 * 109.46895 * 239.99483 * 3 2 1 5 5 H 1.48495 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47382 * 120.00048 * 3 2 1 7 7 C 1.37878 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99782 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00314 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47507 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.46140 * 184.99999 * 10 9 7 12 12 C 1.53190 * 109.31062 * 178.61143 * 11 10 9 13 13 N 1.46920 * 108.77469 * 54.63602 * 12 11 10 14 14 C 1.34774 * 120.63250 * 126.37201 * 13 12 11 15 15 O 1.21288 * 120.00050 * 5.71920 * 14 13 12 16 16 C 1.50706 * 120.00188 * 185.72941 * 14 13 12 17 17 O 1.42900 * 112.84927 * 45.65656 * 16 14 13 18 18 C 1.53786 * 113.68889 * 176.92964 * 16 14 13 19 19 C 1.53774 * 87.08141 * 89.12432 * 18 16 14 20 20 C 1.53778 * 113.61106 * 274.46120 * 16 14 13 21 21 C 1.46924 * 118.73934 * 306.63808 * 13 12 11 22 22 C 1.52760 * 109.00662 * 53.31133 * 21 13 12 23 23 H 0.97002 * 119.99604 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47217 * 59.99206 * 9 7 2 25 25 H 1.09004 * 109.47303 * 299.99782 * 9 7 2 26 26 H 1.08999 * 109.44418 * 304.96118 * 10 9 7 27 27 H 1.09003 * 109.49518 * 58.65809 * 11 10 9 28 28 H 1.09000 * 109.49353 * 298.56580 * 11 10 9 29 29 H 1.09003 * 109.58989 * 294.84482 * 12 11 10 30 30 H 1.09003 * 109.58774 * 174.42194 * 12 11 10 31 31 H 0.96701 * 113.99570 * 54.30586 * 17 16 14 32 32 H 1.09002 * 113.61207 * 203.67567 * 18 16 14 33 33 H 1.08995 * 113.61733 * 334.57225 * 18 16 14 34 34 H 1.09000 * 113.61772 * 270.88106 * 19 18 16 35 35 H 1.09000 * 113.61610 * 139.97761 * 19 18 16 36 36 H 1.09007 * 113.61546 * 25.34857 * 20 16 14 37 37 H 1.09001 * 113.61450 * 156.25194 * 20 16 14 38 38 H 1.09004 * 109.58825 * 173.15182 * 21 13 12 39 39 H 1.09004 * 109.58967 * 293.57140 * 21 13 12 40 40 H 1.09003 * 109.56260 * 185.55014 * 22 21 13 41 41 H 1.09004 * 109.35810 * 65.50117 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4837 -4.9838 -0.1252 12 6 2.4841 -6.1434 -0.1598 13 7 3.3501 -6.0562 1.0238 14 6 3.4913 -7.1112 1.8506 15 8 2.9849 -8.1761 1.5669 16 6 4.2784 -6.9676 3.1278 17 8 3.9494 -5.7803 3.8518 18 6 4.2843 -8.2369 3.9959 19 6 5.5338 -8.6721 3.2124 20 6 5.7907 -7.1794 2.9465 21 6 4.0547 -4.7952 1.2923 22 6 3.0411 -3.6525 1.3075 23 1 -0.4850 0.8401 -0.0004 24 1 0.6244 -2.5571 -0.8896 25 1 0.6239 -2.5568 0.8903 26 1 2.9285 -3.5553 -0.8418 27 1 0.8986 -4.9805 -1.0449 28 1 0.8180 -5.1028 0.7296 29 1 3.0911 -6.0757 -1.0626 30 1 1.9455 -7.0911 -0.1495 31 1 3.0061 -5.6843 4.0419 32 1 4.4762 -8.0432 5.0513 33 1 3.4204 -8.8813 3.8332 34 1 5.3077 -9.2434 2.3121 35 1 6.2965 -9.1426 3.8330 36 1 6.1429 -6.9701 1.9363 37 1 6.3944 -6.6966 3.7149 38 1 4.5523 -4.8535 2.2604 39 1 4.7925 -4.6152 0.5103 40 1 3.5646 -2.7016 1.4076 41 1 2.3608 -3.7841 2.1489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335501497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:49 Heat of formation + Delta-G solvation = -96.388861 kcal Electronic energy + Delta-G solvation = -21375.091740 eV Core-core repulsion = 18254.208326 eV Total energy + Delta-G solvation = -3120.883414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.03069 -39.59905 -38.30695 -36.13802 -35.50269 -33.95500 -32.10585 -29.92724 -27.29940 -26.72585 -25.82003 -24.13552 -23.66804 -22.04518 -20.78261 -19.71107 -19.03818 -18.39608 -17.32593 -16.94809 -16.52314 -16.46208 -15.80047 -15.54430 -15.28230 -14.85156 -14.66515 -14.54970 -14.09680 -13.95365 -13.46396 -13.30022 -13.09841 -12.97059 -12.73393 -12.59329 -12.48622 -12.33220 -12.13947 -11.94201 -11.87492 -11.75944 -11.33718 -11.17941 -11.09224 -10.86299 -10.51441 -10.34634 -9.66388 -8.15352 -6.24826 1.35542 1.42758 1.44822 1.52333 1.89648 2.43951 3.03003 3.18497 3.28380 3.49376 3.68600 3.83010 3.94551 4.04736 4.08523 4.21957 4.34491 4.40832 4.60364 4.65895 4.73160 4.80126 4.86062 4.88934 4.96016 4.97053 5.02933 5.04920 5.10425 5.29194 5.33464 5.38318 5.39785 5.54231 5.59136 5.82145 5.90100 6.27980 6.31596 6.55161 6.91578 7.01583 7.44000 8.96418 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.004499 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.267944 B = 6222.103091 C = 6686.396777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.120 4.120 12 C 0.115 3.885 13 N -0.594 5.594 14 C 0.505 3.495 15 O -0.572 6.572 16 C 0.080 3.920 17 O -0.538 6.538 18 C -0.142 4.142 19 C -0.134 4.134 20 C -0.110 4.110 21 C 0.102 3.898 22 C -0.107 4.107 23 H 0.261 0.739 24 H -0.015 1.015 25 H -0.014 1.014 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.390 0.610 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 -14.410 6.797 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.084 0.916 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.158 4.158 12 C -0.007 4.007 13 N -0.326 5.326 14 C 0.292 3.708 15 O -0.452 6.452 16 C 0.036 3.964 17 O -0.345 6.345 18 C -0.180 4.180 19 C -0.172 4.172 20 C -0.148 4.148 21 C -0.019 4.019 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.003 0.997 25 H 0.005 0.995 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.240 0.760 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.351 -14.746 6.595 20.334 hybrid contribution -1.117 1.157 -0.331 1.642 sum 11.233 -13.588 6.264 18.710 Atomic orbital electron populations 1.70102 1.07887 1.27557 1.52261 1.25941 0.95608 1.03210 0.95125 0.85588 0.78284 0.78499 0.79222 1.19273 1.21447 1.18972 1.21628 0.93558 0.91854 1.49502 0.91632 1.19007 0.93994 0.93088 0.94256 1.21064 0.97053 0.93500 0.97738 1.21897 0.97664 0.94404 1.01852 1.21620 0.92488 0.98927 0.87702 1.48254 1.45765 1.13278 1.25310 1.21192 0.80561 0.83212 0.85806 1.90654 1.50454 1.28040 1.76064 1.22863 0.97617 0.87199 0.88687 1.86516 1.31673 1.41230 1.75127 1.23470 0.99626 0.94915 0.99969 1.22677 0.98128 0.95626 1.00721 1.23120 0.90979 0.96839 1.03823 1.22132 0.94198 0.81351 1.04260 1.21636 0.97735 0.98194 0.96945 0.93053 0.99672 0.99524 0.92257 0.91006 0.93236 0.90274 0.90020 0.76013 0.86803 0.91618 0.91065 0.88084 0.90671 0.86426 0.86000 0.90895 0.90977 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.53 -28.70 8.39 25.60 0.21 -28.48 16 8 H 0.07 3.36 7.06 -2.91 -0.02 3.34 16 9 C 0.03 1.71 4.45 29.85 0.13 1.85 16 10 C -0.07 -2.88 2.10 -10.77 -0.02 -2.91 16 11 C -0.12 -4.02 5.36 30.67 0.16 -3.85 16 12 C 0.11 3.32 6.42 86.36 0.55 3.88 16 13 N -0.59 -16.49 2.98 -819.73 -2.44 -18.93 16 14 C 0.50 14.01 6.77 87.66 0.59 14.60 16 15 O -0.57 -19.22 15.08 -3.05 -0.05 -19.26 16 16 C 0.08 1.71 0.99 -11.01 -0.01 1.70 16 17 O -0.54 -11.08 10.90 -148.98 -1.62 -12.70 16 18 C -0.14 -2.63 7.28 31.12 0.23 -2.41 16 19 C -0.13 -2.23 7.72 31.12 0.24 -1.99 16 20 C -0.11 -1.88 7.25 31.12 0.23 -1.66 16 21 C 0.10 2.68 5.99 86.22 0.52 3.20 16 22 C -0.11 -3.60 5.17 30.53 0.16 -3.44 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 25 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.44 7.04 -2.39 -0.02 2.42 16 31 H 0.39 6.85 9.08 -74.06 -0.67 6.18 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.45 7.48 -2.39 -0.02 1.43 16 34 H 0.07 1.43 7.95 -2.39 -0.02 1.41 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 37 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 2.89 4.58 -2.39 -0.01 2.88 16 39 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 2.61 6.91 -2.39 -0.02 2.59 16 41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -66.53 322.52 2.00 -64.53 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.34 Total: 16.54 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 3.46 Total: -19.14 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.16 Total: -75.36 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.67 Total: -31.97 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -66.53 2.00 -64.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335501497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.856 kcal (2) G-P(sol) polarization free energy of solvation -66.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds