Wall clock time and date at job start Mon Mar 30 2020 01:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48504 * 109.47027 * 269.72742 * 3 2 1 5 5 H 1.48500 * 109.47100 * 29.72783 * 3 2 1 6 6 H 1.48498 * 109.47297 * 149.72702 * 3 2 1 7 7 C 1.40043 * 119.99876 * 179.72672 * 2 1 3 8 8 H 1.07995 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.46381 * 120.00042 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99864 * 352.87602 * 9 7 2 11 11 N 1.34777 * 119.99939 * 172.87981 * 9 7 2 12 12 C 1.47152 * 120.90915 * 4.28932 * 11 9 7 13 13 C 1.52905 * 108.40501 * 230.20819 * 12 11 9 14 14 O 1.42827 * 109.26391 * 308.16790 * 13 12 11 15 15 C 1.43885 * 114.02078 * 63.69099 * 14 13 12 16 16 C 1.46988 * 120.90772 * 184.57304 * 11 9 7 17 17 C 1.54828 * 107.02001 * 50.83428 * 15 14 13 18 18 C 1.50193 * 109.19820 * 43.70321 * 17 15 14 19 19 C 1.54319 * 112.84988 * 94.12003 * 18 17 15 20 20 C 1.53981 * 112.75979 * 318.04764 * 19 18 17 21 21 C 1.50516 * 112.03633 * 318.60889 * 20 19 18 22 22 C 1.45949 * 111.63238 * 173.09063 * 15 14 13 23 23 H 0.96998 * 119.99412 * 0.27115 * 1 2 3 24 24 H 1.08997 * 109.71997 * 349.94198 * 12 11 9 25 25 H 1.09002 * 109.71662 * 110.59086 * 12 11 9 26 26 H 1.08996 * 109.58592 * 188.16294 * 13 12 11 27 27 H 1.09004 * 109.37322 * 68.03816 * 13 12 11 28 28 H 1.09002 * 109.68161 * 248.27850 * 16 11 9 29 29 H 1.09000 * 109.68116 * 8.78522 * 16 11 9 30 30 H 1.09000 * 109.52106 * 163.62319 * 17 15 14 31 31 H 1.09001 * 109.51690 * 283.78964 * 17 15 14 32 32 H 1.09004 * 108.79995 * 333.25222 * 18 17 15 33 33 H 1.09000 * 108.81359 * 214.99723 * 18 17 15 34 34 H 1.08995 * 108.82301 * 197.20356 * 19 18 17 35 35 H 1.08991 * 108.82025 * 78.89477 * 19 18 17 36 36 H 1.09002 * 108.96508 * 197.95144 * 20 19 18 37 37 H 1.09001 * 108.96937 * 79.26981 * 20 19 18 38 38 H 1.09005 * 109.69776 * 334.83563 * 21 20 19 39 39 H 1.08999 * 109.73850 * 214.25449 * 21 20 19 40 40 H 1.09001 * 108.76315 * 62.81901 * 22 15 14 41 41 H 1.09000 * 108.76105 * 180.96504 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6943 6 1 3.5355 1.4418 0.7058 7 6 2.0070 -1.2128 0.0058 8 1 3.0869 -1.2128 0.0054 9 6 1.2751 -2.4805 0.0124 10 8 0.0653 -2.4838 0.1436 11 7 1.9411 -3.6439 -0.1267 12 6 3.4109 -3.6702 -0.1926 13 6 3.8248 -4.4979 -1.4099 14 8 3.1615 -5.7621 -1.3677 15 6 1.7286 -5.6753 -1.4660 16 6 1.2189 -4.9205 -0.2230 17 6 1.4115 -4.7935 -2.6985 18 6 2.3046 -5.1963 -3.8369 19 6 1.6487 -6.2299 -4.7764 20 6 0.8797 -7.3245 -4.0138 21 6 1.6256 -7.7925 -2.7931 22 6 1.1162 -6.9951 -1.5808 23 1 -0.4849 0.8401 -0.0040 24 1 3.7928 -2.6543 -0.2929 25 1 3.8115 -4.1267 0.7125 26 1 4.9037 -4.6521 -1.3971 27 1 3.5425 -3.9686 -2.3200 28 1 1.4058 -5.5163 0.6704 29 1 0.1499 -4.7311 -0.3207 30 1 0.3694 -4.9316 -2.9868 31 1 1.5862 -3.7463 -2.4517 32 1 3.2214 -5.6231 -3.4301 33 1 2.5596 -4.3080 -4.4149 34 1 2.4257 -6.7007 -5.3786 35 1 0.9570 -5.7121 -5.4408 36 1 0.7196 -8.1735 -4.6784 37 1 -0.0887 -6.9290 -3.7072 38 1 2.6934 -7.6176 -2.9256 39 1 1.4443 -8.8558 -2.6361 40 1 1.3300 -7.5609 -0.6740 41 1 0.0366 -6.8741 -1.6693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335692686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:52 Heat of formation + Delta-G solvation = -83.685423 kcal Electronic energy + Delta-G solvation = -22297.735345 eV Core-core repulsion = 19177.402793 eV Total energy + Delta-G solvation = -3120.332552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44247 -37.36493 -36.02265 -33.33466 -32.76144 -32.41854 -31.52683 -28.39803 -27.12825 -25.31174 -24.59857 -23.22756 -21.95486 -19.70661 -19.20430 -18.77922 -16.77779 -16.14063 -15.80545 -15.43974 -14.89443 -14.60171 -14.36830 -14.18180 -13.84853 -13.55811 -13.04235 -12.74433 -12.53683 -12.23721 -11.91450 -11.80040 -11.60635 -11.42121 -11.20116 -11.14595 -10.97413 -10.62624 -10.49812 -10.27866 -10.25805 -10.11692 -10.10824 -10.08732 -9.62860 -9.27475 -8.88487 -7.63215 -7.17756 -6.24708 -4.69374 3.10249 3.17649 3.20610 4.00589 4.10405 4.48139 4.51633 4.82270 4.90871 5.04053 5.27072 5.28074 5.44236 5.52266 5.54516 5.59291 5.68883 5.73744 5.85775 5.87243 5.93712 5.99988 6.11815 6.14167 6.21622 6.30262 6.33818 6.36981 6.39705 6.41901 6.47537 6.56787 6.60484 6.72920 6.83879 7.40511 7.52169 7.63271 8.07560 8.29873 8.97566 9.37775 10.52603 10.70958 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.005762 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.086921 B = 4858.287609 C = 4872.840144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.576 6.576 11 N -0.640 5.640 12 C 0.088 3.912 13 C 0.040 3.960 14 O -0.379 6.379 15 C 0.112 3.888 16 C 0.100 3.900 17 C -0.142 4.142 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.101 4.101 23 H 0.269 0.731 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.952 -10.981 -6.709 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.459 6.459 11 N -0.378 5.378 12 C -0.036 4.036 13 C -0.037 4.037 14 O -0.298 6.298 15 C 0.072 3.928 16 C -0.024 4.024 17 C -0.180 4.180 18 C -0.162 4.162 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.148 4.148 22 C -0.139 4.139 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.175 -11.013 -6.599 13.842 hybrid contribution 0.409 1.128 0.003 1.200 sum 5.584 -9.885 -6.595 13.130 Atomic orbital electron populations 1.70010 1.07067 1.27363 1.35206 1.25719 0.94613 1.00284 0.92550 0.86396 0.80222 0.81468 0.78853 1.19724 1.20405 1.18837 1.20945 0.93545 0.89204 1.54465 0.90961 1.18251 0.86843 0.82035 0.76161 1.90594 1.14651 1.85955 1.54656 1.48171 1.04599 1.05807 1.79267 1.22004 0.83363 1.01592 0.96678 1.22980 0.96333 0.85573 0.98835 1.87974 1.18713 1.28982 1.94158 1.21045 0.81393 0.95150 0.95244 1.21886 0.98852 0.86363 0.95323 1.21974 1.00169 1.01321 0.94518 1.21379 1.00321 0.98107 0.96357 1.21913 0.99066 0.96314 0.97764 1.21372 0.99393 0.97766 0.97097 1.21134 1.01408 0.98275 0.93992 1.20319 0.99972 0.94381 0.99188 0.92047 0.88319 0.93482 0.89311 0.92148 0.93595 0.89375 0.91677 0.90032 0.90414 0.92882 0.92820 0.92881 0.92817 0.92139 0.90668 0.92314 0.91729 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.74 11.85 55.55 0.66 -22.08 16 2 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 3 Si 0.91 19.80 29.56 -169.99 -5.02 14.77 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.55 -15.03 8.85 -35.63 -0.32 -15.34 16 8 H 0.07 1.81 5.72 -52.49 -0.30 1.51 16 9 C 0.56 15.79 7.42 -12.98 -0.10 15.70 16 10 O -0.58 -18.47 14.53 5.20 0.08 -18.40 16 11 N -0.64 -14.57 1.99 -173.81 -0.35 -14.92 16 12 C 0.09 1.66 6.54 -3.73 -0.02 1.64 16 13 C 0.04 0.64 5.80 37.11 0.22 0.86 16 14 O -0.38 -6.24 8.21 -35.23 -0.29 -6.53 16 15 C 0.11 1.85 0.75 -92.42 -0.07 1.78 16 16 C 0.10 2.03 5.34 -3.20 -0.02 2.01 16 17 C -0.14 -2.43 3.86 -27.17 -0.10 -2.53 16 18 C -0.12 -1.78 3.99 -27.44 -0.11 -1.89 16 19 C -0.11 -1.37 5.86 -25.53 -0.15 -1.52 16 20 C -0.12 -1.37 5.35 -27.46 -0.15 -1.52 16 21 C -0.11 -1.33 5.58 -27.56 -0.15 -1.48 16 22 C -0.10 -1.39 4.31 -29.66 -0.13 -1.52 16 23 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 24 H 0.10 1.89 5.41 -51.93 -0.28 1.61 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.99 5.18 -51.93 -0.27 0.72 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.97 7.09 -51.93 -0.37 1.60 16 30 H 0.06 1.12 7.03 -51.93 -0.37 0.75 16 31 H 0.08 1.69 5.99 -51.93 -0.31 1.38 16 32 H 0.08 1.12 4.79 -51.93 -0.25 0.87 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.73 6.64 -51.93 -0.34 0.39 16 38 H 0.07 0.98 6.28 -51.93 -0.33 0.65 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.02 7.40 -51.93 -0.38 0.63 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -32.47 299.72 -7.74 -40.21 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.14 Total: 3.93 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.20 Total: -1.50 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.31 Total: -37.00 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.21 Total: -24.93 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.47 -7.74 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335692686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.473 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds