Wall clock time and date at job start Mon Mar 30 2020 01:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86797 * 120.00045 * 2 1 4 4 H 1.48504 * 109.47027 * 269.72742 * 3 2 1 5 5 H 1.48500 * 109.47100 * 29.72783 * 3 2 1 6 6 H 1.48498 * 109.47297 * 149.72702 * 3 2 1 7 7 C 1.40043 * 119.99876 * 179.72672 * 2 1 3 8 8 H 1.07995 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.46381 * 120.00042 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99864 * 352.87602 * 9 7 2 11 11 N 1.34777 * 119.99939 * 172.87981 * 9 7 2 12 12 C 1.47152 * 120.90915 * 4.28932 * 11 9 7 13 13 C 1.52905 * 108.40501 * 230.20819 * 12 11 9 14 14 O 1.42827 * 109.26391 * 308.16790 * 13 12 11 15 15 C 1.43885 * 114.02078 * 63.69099 * 14 13 12 16 16 C 1.46988 * 120.90772 * 184.57304 * 11 9 7 17 17 C 1.54828 * 107.02001 * 50.83428 * 15 14 13 18 18 C 1.50193 * 109.19820 * 43.70321 * 17 15 14 19 19 C 1.54319 * 112.84988 * 94.12003 * 18 17 15 20 20 C 1.53981 * 112.75979 * 318.04764 * 19 18 17 21 21 C 1.50516 * 112.03633 * 318.60889 * 20 19 18 22 22 C 1.45949 * 111.63238 * 173.09063 * 15 14 13 23 23 H 0.96998 * 119.99412 * 0.27115 * 1 2 3 24 24 H 1.08997 * 109.71997 * 349.94198 * 12 11 9 25 25 H 1.09002 * 109.71662 * 110.59086 * 12 11 9 26 26 H 1.08996 * 109.58592 * 188.16294 * 13 12 11 27 27 H 1.09004 * 109.37322 * 68.03816 * 13 12 11 28 28 H 1.09002 * 109.68161 * 248.27850 * 16 11 9 29 29 H 1.09000 * 109.68116 * 8.78522 * 16 11 9 30 30 H 1.09000 * 109.52106 * 163.62319 * 17 15 14 31 31 H 1.09001 * 109.51690 * 283.78964 * 17 15 14 32 32 H 1.09004 * 108.79995 * 333.25222 * 18 17 15 33 33 H 1.09000 * 108.81359 * 214.99723 * 18 17 15 34 34 H 1.08995 * 108.82301 * 197.20356 * 19 18 17 35 35 H 1.08991 * 108.82025 * 78.89477 * 19 18 17 36 36 H 1.09002 * 108.96508 * 197.95144 * 20 19 18 37 37 H 1.09001 * 108.96937 * 79.26981 * 20 19 18 38 38 H 1.09005 * 109.69776 * 334.83563 * 21 20 19 39 39 H 1.08999 * 109.73850 * 214.25449 * 21 20 19 40 40 H 1.09001 * 108.76315 * 62.81901 * 22 15 14 41 41 H 1.09000 * 108.76105 * 180.96504 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6943 6 1 3.5355 1.4418 0.7058 7 6 2.0070 -1.2128 0.0058 8 1 3.0869 -1.2128 0.0054 9 6 1.2751 -2.4805 0.0124 10 8 0.0653 -2.4838 0.1436 11 7 1.9411 -3.6439 -0.1267 12 6 3.4109 -3.6702 -0.1926 13 6 3.8248 -4.4979 -1.4099 14 8 3.1615 -5.7621 -1.3677 15 6 1.7286 -5.6753 -1.4660 16 6 1.2189 -4.9205 -0.2230 17 6 1.4115 -4.7935 -2.6985 18 6 2.3046 -5.1963 -3.8369 19 6 1.6487 -6.2299 -4.7764 20 6 0.8797 -7.3245 -4.0138 21 6 1.6256 -7.7925 -2.7931 22 6 1.1162 -6.9951 -1.5808 23 1 -0.4849 0.8401 -0.0040 24 1 3.7928 -2.6543 -0.2929 25 1 3.8115 -4.1267 0.7125 26 1 4.9037 -4.6521 -1.3971 27 1 3.5425 -3.9686 -2.3200 28 1 1.4058 -5.5163 0.6704 29 1 0.1499 -4.7311 -0.3207 30 1 0.3694 -4.9316 -2.9868 31 1 1.5862 -3.7463 -2.4517 32 1 3.2214 -5.6231 -3.4301 33 1 2.5596 -4.3080 -4.4149 34 1 2.4257 -6.7007 -5.3786 35 1 0.9570 -5.7121 -5.4408 36 1 0.7196 -8.1735 -4.6784 37 1 -0.0887 -6.9290 -3.7072 38 1 2.6934 -7.6176 -2.9256 39 1 1.4443 -8.8558 -2.6361 40 1 1.3300 -7.5609 -0.6740 41 1 0.0366 -6.8741 -1.6693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335692686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:52 Heat of formation + Delta-G solvation = -104.303626 kcal Electronic energy + Delta-G solvation = -22298.629417 eV Core-core repulsion = 19177.402793 eV Total energy + Delta-G solvation = -3121.226624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.85396 -39.18332 -37.43642 -35.15976 -34.61662 -33.90848 -32.75227 -29.80257 -29.08908 -26.95095 -25.80586 -24.61518 -23.43990 -21.33377 -20.54929 -20.10300 -18.59845 -17.89316 -17.37072 -16.88091 -16.44928 -16.00619 -15.98320 -15.62432 -15.29891 -14.96494 -14.41987 -14.29253 -13.86703 -13.64281 -13.58845 -13.29462 -13.14019 -12.99599 -12.84542 -12.76259 -12.35617 -12.10527 -12.05768 -11.85502 -11.67172 -11.37322 -11.20078 -11.18144 -11.00569 -10.96875 -10.75313 -9.81998 -9.02115 -8.32535 -6.87191 1.37817 1.39523 1.54624 2.20248 2.43144 2.62401 2.87318 3.49940 3.64538 3.73963 3.85085 4.11954 4.15211 4.25243 4.28483 4.37505 4.40361 4.44896 4.48991 4.60260 4.63066 4.73533 4.77000 4.89242 4.95177 5.00594 5.06540 5.13848 5.19640 5.32305 5.33625 5.35077 5.41323 5.44258 5.48851 5.64878 5.68651 6.07541 6.24738 6.32258 6.84775 7.36484 8.42530 8.63844 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.005762 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.086921 B = 4858.287609 C = 4872.840144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.544 3.456 10 O -0.632 6.632 11 N -0.642 5.642 12 C 0.082 3.918 13 C 0.046 3.954 14 O -0.373 6.373 15 C 0.128 3.872 16 C 0.095 3.905 17 C -0.135 4.135 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.104 4.104 23 H 0.274 0.726 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.131 0.869 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.553 -11.987 -7.817 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.605 4.605 8 H 0.112 0.888 9 C 0.350 3.650 10 O -0.519 6.519 11 N -0.378 5.378 12 C -0.041 4.041 13 C -0.031 4.031 14 O -0.292 6.292 15 C 0.088 3.912 16 C -0.029 4.029 17 C -0.173 4.173 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.139 4.139 22 C -0.142 4.142 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.831 -12.075 -7.716 16.330 hybrid contribution -0.413 1.390 0.393 1.502 sum 7.419 -10.685 -7.323 14.928 Atomic orbital electron populations 1.70192 1.09596 1.28925 1.36579 1.26991 0.95481 1.04936 0.91149 0.85056 0.78879 0.75118 0.79522 1.18442 1.19994 1.16979 1.21466 0.94784 0.89640 1.54572 0.88782 1.18658 0.86477 0.83949 0.75870 1.90538 1.16942 1.87250 1.57155 1.48005 1.06494 1.05329 1.78016 1.22251 0.80654 1.02294 0.98911 1.23050 0.98406 0.84825 0.96837 1.87993 1.18195 1.29090 1.93901 1.20941 0.81680 0.95980 0.92644 1.22052 0.97139 0.85847 0.97849 1.21859 1.00432 0.98872 0.96143 1.21317 0.99834 0.98821 0.95569 1.21908 0.99632 0.95950 0.97373 1.21389 0.98631 0.98292 0.97389 1.21101 1.00925 0.99155 0.92753 1.20380 0.99839 0.93020 1.00966 0.91623 0.88812 0.92135 0.85180 0.92756 0.92893 0.92601 0.92611 0.94399 0.89964 0.93215 0.90810 0.92922 0.90459 0.93206 0.91034 0.89971 0.90926 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.78 11.85 21.84 0.26 -50.52 16 2 C 0.03 1.64 5.50 85.30 0.47 2.11 16 3 Si 1.00 40.73 29.56 68.60 2.03 42.75 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.57 -32.10 8.85 24.83 0.22 -31.88 16 8 H 0.09 4.71 5.72 -2.91 -0.02 4.69 16 9 C 0.54 32.13 7.42 86.36 0.64 32.77 16 10 O -0.63 -43.19 14.53 -4.32 -0.06 -43.25 16 11 N -0.64 -30.20 1.99 -822.02 -1.64 -31.84 16 12 C 0.08 3.04 6.54 86.22 0.56 3.60 16 13 C 0.05 1.37 5.80 71.95 0.42 1.79 16 14 O -0.37 -11.52 8.21 -148.98 -1.22 -12.74 16 15 C 0.13 4.19 0.75 -11.96 -0.01 4.18 16 16 C 0.10 4.00 5.34 86.66 0.46 4.47 16 17 C -0.14 -4.71 3.86 30.31 0.12 -4.59 16 18 C -0.12 -3.23 3.99 30.14 0.12 -3.11 16 19 C -0.11 -2.44 5.86 31.37 0.18 -2.25 16 20 C -0.12 -2.44 5.35 30.12 0.16 -2.28 16 21 C -0.10 -2.14 5.58 30.06 0.17 -1.97 16 22 C -0.10 -2.75 4.31 28.70 0.12 -2.63 16 23 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 24 H 0.09 3.54 5.41 -2.39 -0.01 3.53 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.05 1.72 5.18 -2.39 -0.01 1.71 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.69 7.09 -2.39 -0.02 2.67 16 30 H 0.06 2.00 7.03 -2.39 -0.02 1.98 16 31 H 0.04 1.64 5.99 -2.39 -0.01 1.63 16 32 H 0.08 2.18 4.79 -2.39 -0.01 2.17 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.13 6.64 -2.39 -0.02 1.11 16 38 H 0.07 1.59 6.28 -2.38 -0.01 1.58 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.00 7.40 -2.39 -0.02 1.98 16 Total: -1.00 -74.81 299.72 4.03 -70.78 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 1.03 Total: 24.60 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 3.64 Total: 0.21 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -1.38 Total: -82.36 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -1.29 Total: -55.99 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -74.81 4.03 -70.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335692686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.527 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds