Wall clock time and date at job start Mon Mar 30 2020 01:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.54241 * 108.89504 * 301.39096 * 15 13 12 17 17 C 1.50555 * 108.48311 * 159.17636 * 16 15 13 18 18 C 1.54069 * 112.41332 * 94.27355 * 17 16 15 19 19 C 1.54066 * 112.81280 * 318.27645 * 18 17 16 20 20 C 1.50474 * 112.49812 * 318.28344 * 19 18 17 21 21 C 1.45545 * 108.89502 * 178.60298 * 15 13 12 22 22 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 25 25 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 26 26 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 27 27 H 1.09002 * 108.87422 * 60.00194 * 15 13 12 28 28 H 1.08993 * 109.63244 * 278.97673 * 16 15 13 29 29 H 1.09000 * 109.62377 * 39.55613 * 16 15 13 30 30 H 1.08997 * 108.92473 * 333.51295 * 17 16 15 31 31 H 1.09002 * 108.91816 * 215.02246 * 17 16 15 32 32 H 1.09000 * 108.80974 * 197.42057 * 18 17 16 33 33 H 1.08993 * 108.73028 * 79.07413 * 18 17 16 34 34 H 1.09005 * 108.87772 * 197.50744 * 19 18 17 35 35 H 1.08998 * 108.80280 * 79.01335 * 19 18 17 36 36 H 1.09000 * 109.63080 * 334.44958 * 20 19 18 37 37 H 1.08999 * 109.63341 * 213.85865 * 20 19 18 38 38 H 1.08996 * 108.89792 * 303.43819 * 21 15 13 39 39 H 1.08998 * 108.89342 * 61.93547 * 21 15 13 40 40 H 1.09001 * 113.77016 * 221.05654 * 22 12 11 41 41 H 1.09005 * 113.86980 * 89.67729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 0.3248 -5.0714 3.7264 17 6 -0.8720 -4.8344 4.6086 18 6 -1.0770 -5.9637 5.6364 19 6 -0.8497 -7.3649 5.0376 20 6 -1.4454 -7.5072 3.6631 21 6 -0.3514 -7.1980 2.6206 22 6 2.1615 -3.7405 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3764 -1.7802 -0.9678 25 1 1.3966 -2.5373 2.2104 26 1 -0.2731 -2.8605 1.5670 27 1 -1.0898 -5.3182 2.1157 28 1 1.0426 -5.7079 4.2436 29 1 0.7898 -4.1174 3.4777 30 1 -1.7622 -4.7599 3.9841 31 1 -0.7375 -3.8929 5.1412 32 1 -2.0949 -5.9071 6.0222 33 1 -0.3801 -5.8168 6.4614 34 1 -1.3009 -8.1072 5.6960 35 1 0.2225 -7.5519 4.9784 36 1 -2.2707 -6.8047 3.5471 37 1 -1.8060 -8.5264 3.5240 38 1 -0.6376 -7.6409 1.6667 39 1 0.5860 -7.6469 2.9490 40 1 2.1758 -4.2745 -0.9513 41 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335878784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:14 Heat of formation + Delta-G solvation = -90.577190 kcal Electronic energy + Delta-G solvation = -21479.814516 eV Core-core repulsion = 18359.183114 eV Total energy + Delta-G solvation = -3120.631401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64978 -39.89848 -38.43954 -35.85296 -34.13386 -33.54367 -33.06217 -30.29787 -27.43980 -27.04687 -25.96796 -25.32516 -22.49011 -21.24744 -20.14924 -19.99634 -19.20840 -17.95886 -17.46781 -16.91065 -16.68311 -16.01813 -15.92131 -15.45404 -15.19126 -14.82078 -14.39830 -14.28377 -14.04063 -13.87955 -13.72068 -13.39479 -13.13161 -13.02213 -12.85669 -12.74425 -12.28628 -12.22517 -12.14606 -11.77974 -11.57539 -11.46460 -11.29229 -11.21002 -11.10498 -10.81189 -10.60114 -10.19245 -9.56592 -8.26538 -6.43448 1.46604 1.50422 1.59055 1.62519 1.96967 2.41053 2.95994 3.36581 3.63631 3.75033 3.81149 4.10248 4.16577 4.21233 4.24799 4.32876 4.41413 4.41978 4.47010 4.57654 4.61682 4.78851 4.87909 4.89891 4.92568 4.99906 5.02347 5.09707 5.22503 5.24096 5.30418 5.34554 5.38263 5.40211 5.49159 5.59531 5.72996 5.93126 6.61770 6.86435 7.14875 7.30398 7.46980 8.79519 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.005106 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.447304 B = 5482.664229 C = 6040.108738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.035 3.965 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.218 3.782 10 O -0.588 6.588 11 C 0.099 3.901 12 N -0.632 5.632 13 C 0.518 3.482 14 O -0.602 6.602 15 C -0.083 4.083 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.100 4.100 22 C 0.107 3.893 23 H 0.276 0.724 24 H 0.388 0.612 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -6.740 11.742 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.166 4.166 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.177 3.823 10 O -0.401 6.401 11 C -0.023 4.023 12 N -0.365 5.365 13 C 0.310 3.690 14 O -0.485 6.485 15 C -0.104 4.104 16 C -0.141 4.141 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.016 4.016 23 H 0.086 0.914 24 H 0.243 0.757 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.329 -7.863 11.378 14.225 hybrid contribution 0.262 1.367 -0.416 1.453 sum -3.066 -6.496 10.962 13.106 Atomic orbital electron populations 1.69377 1.07089 1.28934 1.50255 1.25722 0.95744 1.02497 0.92596 0.85401 0.78462 0.78348 0.78493 1.19533 1.19684 1.20872 1.21727 0.94112 0.90834 1.52794 0.91102 1.20143 0.85532 0.91671 0.84959 1.86046 1.45694 1.50370 1.57961 1.24039 0.99928 0.77390 1.00949 1.50205 1.41601 1.05243 1.39412 1.21297 0.83662 0.80554 0.83480 1.90589 1.58080 1.41185 1.58645 1.20224 0.96830 0.99474 0.93864 1.21368 0.99359 1.00006 0.93414 1.21322 0.97011 0.99306 0.97682 1.21904 1.02315 0.93246 0.97533 1.21364 1.00869 0.97332 0.96134 1.21287 0.97025 1.02217 0.93884 1.20297 1.00073 0.93419 0.99982 1.23456 0.94676 0.92029 0.91438 0.91379 0.75654 0.88939 0.91437 0.88993 0.91013 0.92119 0.91969 0.91227 0.90994 0.91670 0.90690 0.92873 0.91059 0.90550 0.93459 0.92573 0.92699 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.44 11.09 21.45 0.24 -45.20 16 2 C 0.04 1.70 5.40 84.66 0.46 2.16 16 3 Si 0.97 38.83 29.54 68.60 2.03 40.85 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.56 -27.58 8.62 25.60 0.22 -27.36 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 10.46 1.44 -10.88 -0.02 10.45 16 10 O -0.59 -30.80 13.48 -148.98 -2.01 -32.81 16 11 C 0.10 4.15 6.28 86.48 0.54 4.70 16 12 N -0.63 -26.87 3.48 -840.23 -2.93 -29.79 16 13 C 0.52 21.38 7.33 87.66 0.64 22.02 16 14 O -0.60 -28.68 16.51 -3.04 -0.05 -28.73 16 15 C -0.08 -2.58 1.87 -13.40 -0.03 -2.60 16 16 C -0.10 -2.74 4.87 30.22 0.15 -2.59 16 17 C -0.12 -2.42 5.32 30.16 0.16 -2.25 16 18 C -0.11 -1.89 5.85 31.32 0.18 -1.71 16 19 C -0.12 -2.10 5.32 30.14 0.16 -1.94 16 20 C -0.11 -2.14 5.61 30.20 0.17 -1.97 16 21 C -0.10 -2.79 3.83 28.74 0.11 -2.68 16 22 C 0.11 4.76 8.22 86.48 0.71 5.47 16 23 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 24 H 0.39 20.43 6.46 -74.06 -0.48 19.95 16 25 H 0.09 3.64 7.69 -2.39 -0.02 3.62 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 27 H 0.09 2.82 7.47 -2.39 -0.02 2.81 16 28 H 0.07 1.83 6.96 -2.39 -0.02 1.81 16 29 H 0.06 1.77 5.58 -2.39 -0.01 1.76 16 30 H 0.06 1.32 6.63 -2.39 -0.02 1.30 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 1.03 6.62 -2.39 -0.02 1.02 16 36 H 0.07 1.38 6.98 -2.39 -0.02 1.36 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.48 7.89 -2.39 -0.02 1.46 16 39 H 0.06 1.67 7.37 -2.39 -0.02 1.66 16 40 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.10 4.08 8.09 -2.38 -0.02 4.07 16 Total: -1.00 -58.33 316.24 1.29 -57.04 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.54 Total: 36.95 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 3.46 Total: 1.69 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -2.69 Total: -74.99 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -2.06 Total: -61.54 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -58.33 1.29 -57.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335878784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.536 kcal (2) G-P(sol) polarization free energy of solvation -58.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds