Wall clock time and date at job start Mon Mar 30 2020 01:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21281 * 119.99980 * 179.86464 * 13 12 11 15 15 C 1.50696 * 119.99792 * 359.87006 * 13 12 11 16 16 C 1.53003 * 109.46849 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46999 * 294.99700 * 16 15 13 18 18 C 1.53003 * 109.46999 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.46970 * 60.00313 * 18 17 16 20 20 C 1.52998 * 109.47004 * 299.99684 * 19 18 17 21 21 C 1.52998 * 109.46970 * 175.00013 * 16 15 13 22 22 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 25 25 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 26 26 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 27 27 H 1.08997 * 109.47166 * 299.99767 * 15 13 12 28 28 H 1.08996 * 109.47290 * 59.99858 * 15 13 12 29 29 H 1.08998 * 109.47438 * 55.00183 * 16 15 13 30 30 H 1.09003 * 109.47605 * 300.00074 * 17 16 15 31 31 H 1.09004 * 109.46785 * 60.00687 * 17 16 15 32 32 H 1.09001 * 109.46958 * 299.99905 * 18 17 16 33 33 H 1.09008 * 109.46937 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46771 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47151 * 60.00221 * 19 18 17 36 36 H 1.08998 * 109.47420 * 299.99840 * 20 19 18 37 37 H 1.09002 * 109.46711 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.47523 * 299.99938 * 21 16 15 39 39 H 1.09003 * 109.47151 * 60.00221 * 21 16 15 40 40 H 1.08999 * 113.76805 * 221.15228 * 22 12 11 41 41 H 1.09000 * 113.87378 * 89.76768 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9074 -3.3080 -0.9006 15 6 7.0444 -1.5307 -2.4472 16 6 8.4419 -2.1015 -2.6966 17 6 9.2878 -1.9505 -1.4307 18 6 10.6855 -2.5207 -1.6803 19 6 11.3486 -1.7604 -2.8305 20 6 10.5027 -1.9115 -4.0964 21 6 9.1053 -1.3417 -3.8470 22 6 4.1313 -2.6024 -0.0480 23 1 -0.4850 0.8401 0.0004 24 1 3.7023 0.5402 1.0280 25 1 3.4726 -1.2571 -2.2148 26 1 4.5870 0.0025 -1.5238 27 1 6.4704 -1.5566 -3.3734 28 1 7.1295 -0.5006 -2.1012 29 1 8.3622 -3.1570 -2.9565 30 1 9.3676 -0.8949 -1.1708 31 1 8.8152 -2.4919 -0.6111 32 1 10.6061 -3.5763 -1.9404 33 1 11.2881 -2.4135 -0.7783 34 1 12.3445 -2.1664 -3.0080 35 1 11.4280 -0.7049 -2.5703 36 1 10.4233 -2.9670 -4.3566 37 1 10.9753 -1.3701 -4.9159 38 1 8.5027 -1.4492 -4.7488 39 1 9.1851 -0.2862 -3.5870 40 1 4.5862 -2.9145 0.8921 41 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335883079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:57 Heat of formation + Delta-G solvation = -66.837179 kcal Electronic energy + Delta-G solvation = -21029.200084 eV Core-core repulsion = 17909.598127 eV Total energy + Delta-G solvation = -3119.601957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94989 -38.74726 -37.25310 -34.44668 -32.60730 -32.56069 -30.71299 -29.27892 -27.04711 -25.49870 -24.97292 -22.61459 -21.59652 -20.10365 -19.68031 -18.47662 -17.44309 -16.50785 -16.32340 -15.38866 -15.34487 -15.12711 -14.26505 -14.21084 -13.88007 -13.65533 -13.40745 -13.25148 -12.72567 -12.48989 -12.29486 -12.25925 -12.05216 -11.81146 -11.48370 -11.25948 -11.11378 -10.99047 -10.88485 -10.63047 -10.43231 -10.23791 -10.13933 -10.03029 -9.61418 -9.24701 -8.99604 -8.68430 -7.99558 -6.44118 -4.50374 2.97143 2.99141 3.11874 3.12626 3.42213 4.01034 4.59723 4.64674 4.71066 4.71737 4.93488 5.10564 5.13925 5.25844 5.33371 5.48332 5.50067 5.53414 5.59535 5.62933 5.69926 5.79504 5.88625 5.98698 6.03543 6.06589 6.10617 6.14729 6.19151 6.26861 6.29025 6.34501 6.48805 6.54203 6.58112 6.61912 7.18845 8.01420 8.32541 8.50165 8.59914 8.67268 9.13387 10.68152 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.004405 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.103795 B = 6354.521555 C = 6608.718654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.080 3.920 3 Si 0.858 3.142 4 H -0.267 1.267 5 H -0.255 1.255 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.091 0.909 9 C 0.194 3.806 10 O -0.554 6.554 11 C 0.063 3.937 12 N -0.636 5.636 13 C 0.529 3.471 14 O -0.557 6.557 15 C -0.132 4.132 16 C -0.068 4.068 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.115 4.115 22 C 0.126 3.874 23 H 0.271 0.729 24 H 0.352 0.648 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.854 0.450 -7.509 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.125 4.125 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.181 1.181 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.109 0.891 9 C 0.154 3.846 10 O -0.364 6.364 11 C -0.060 4.060 12 N -0.370 5.370 13 C 0.320 3.680 14 O -0.437 6.437 15 C -0.172 4.172 16 C -0.087 4.087 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.153 4.153 22 C 0.005 3.995 23 H 0.081 0.919 24 H 0.203 0.797 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.501 -0.515 -7.188 18.006 hybrid contribution -0.130 1.573 -0.236 1.596 sum 16.372 1.058 -7.425 18.008 Atomic orbital electron populations 1.69861 1.06097 1.27625 1.47644 1.25009 0.94903 0.99011 0.93597 0.87350 0.80490 0.84335 0.79209 1.19323 1.18067 1.20947 1.21249 0.87738 0.95697 1.52795 0.89117 1.20563 0.92557 0.88044 0.83484 1.86469 1.67536 1.25604 1.56800 1.24652 0.88741 0.90261 1.02349 1.50216 1.12400 1.32563 1.41835 1.20247 0.80460 0.84581 0.82758 1.90604 1.65333 1.30283 1.57481 1.21674 0.96679 1.00350 0.98501 1.20885 0.92264 1.00214 0.95336 1.21713 0.94805 1.00783 0.98492 1.21501 0.96350 0.99797 0.97758 1.21555 0.98255 1.00498 0.95421 1.21495 0.95535 1.01112 0.97348 1.21599 0.95922 0.99746 0.98027 1.23245 0.87576 0.96908 0.91819 0.91891 0.79655 0.88778 0.91331 0.89394 0.89452 0.90544 0.92853 0.89738 0.92094 0.92399 0.92493 0.92231 0.92062 0.92311 0.92075 0.92023 0.90728 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.33 13.96 55.43 0.77 -23.56 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 18.52 24.31 -169.99 -4.13 14.39 16 4 H -0.27 -5.65 7.05 56.52 0.40 -5.25 16 5 H -0.26 -5.10 5.16 56.52 0.29 -4.81 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.74 9.19 -34.44 -0.32 -14.05 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.19 4.38 1.06 -90.85 -0.10 4.28 16 10 O -0.55 -12.90 13.35 -35.23 -0.47 -13.37 16 11 C 0.06 1.24 7.10 -2.84 -0.02 1.22 16 12 N -0.64 -12.58 3.61 -178.11 -0.64 -13.22 16 13 C 0.53 9.91 7.77 -10.98 -0.09 9.83 16 14 O -0.56 -11.77 14.69 5.56 0.08 -11.69 16 15 C -0.13 -1.89 4.92 -27.88 -0.14 -2.03 16 16 C -0.07 -0.88 1.84 -90.62 -0.17 -1.05 16 17 C -0.12 -1.62 4.94 -26.73 -0.13 -1.76 16 18 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 19 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 20 C -0.12 -1.10 5.92 -26.76 -0.16 -1.26 16 21 C -0.12 -1.19 5.20 -26.76 -0.14 -1.33 16 22 C 0.13 2.63 8.23 -2.97 -0.02 2.61 16 23 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.35 7.77 3.57 45.56 0.16 7.93 16 25 H 0.09 1.75 8.09 -51.92 -0.42 1.33 16 26 H 0.07 1.27 6.83 -51.93 -0.35 0.92 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.09 7.95 -51.93 -0.41 0.67 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 LS Contribution 317.29 15.07 4.78 4.78 Total: -1.00 -28.80 317.29 -7.80 -36.60 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.50 Total: 10.42 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.69 Total: -4.35 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.13 Total: -36.78 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.39 Total: -25.06 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.13 Total: 14.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.80 -7.80 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335883079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.238 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds