Wall clock time and date at job start Mon Mar 30 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21281 * 119.99980 * 179.86464 * 13 12 11 15 15 C 1.50696 * 119.99792 * 359.87006 * 13 12 11 16 16 C 1.53003 * 109.46849 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46999 * 294.99700 * 16 15 13 18 18 C 1.53003 * 109.46999 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.46970 * 60.00313 * 18 17 16 20 20 C 1.52998 * 109.47004 * 299.99684 * 19 18 17 21 21 C 1.52998 * 109.46970 * 175.00013 * 16 15 13 22 22 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 25 25 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 26 26 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 27 27 H 1.08997 * 109.47166 * 299.99767 * 15 13 12 28 28 H 1.08996 * 109.47290 * 59.99858 * 15 13 12 29 29 H 1.08998 * 109.47438 * 55.00183 * 16 15 13 30 30 H 1.09003 * 109.47605 * 300.00074 * 17 16 15 31 31 H 1.09004 * 109.46785 * 60.00687 * 17 16 15 32 32 H 1.09001 * 109.46958 * 299.99905 * 18 17 16 33 33 H 1.09008 * 109.46937 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46771 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47151 * 60.00221 * 19 18 17 36 36 H 1.08998 * 109.47420 * 299.99840 * 20 19 18 37 37 H 1.09002 * 109.46711 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.47523 * 299.99938 * 21 16 15 39 39 H 1.09003 * 109.47151 * 60.00221 * 21 16 15 40 40 H 1.08999 * 113.76805 * 221.15228 * 22 12 11 41 41 H 1.09000 * 113.87378 * 89.76768 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9074 -3.3080 -0.9006 15 6 7.0444 -1.5307 -2.4472 16 6 8.4419 -2.1015 -2.6966 17 6 9.2878 -1.9505 -1.4307 18 6 10.6855 -2.5207 -1.6803 19 6 11.3486 -1.7604 -2.8305 20 6 10.5027 -1.9115 -4.0964 21 6 9.1053 -1.3417 -3.8470 22 6 4.1313 -2.6024 -0.0480 23 1 -0.4850 0.8401 0.0004 24 1 3.7023 0.5402 1.0280 25 1 3.4726 -1.2571 -2.2148 26 1 4.5870 0.0025 -1.5238 27 1 6.4704 -1.5566 -3.3734 28 1 7.1295 -0.5006 -2.1012 29 1 8.3622 -3.1570 -2.9565 30 1 9.3676 -0.8949 -1.1708 31 1 8.8152 -2.4919 -0.6111 32 1 10.6061 -3.5763 -1.9404 33 1 11.2881 -2.4135 -0.7783 34 1 12.3445 -2.1664 -3.0080 35 1 11.4280 -0.7049 -2.5703 36 1 10.4233 -2.9670 -4.3566 37 1 10.9753 -1.3701 -4.9159 38 1 8.5027 -1.4492 -4.7488 39 1 9.1851 -0.2862 -3.5870 40 1 4.5862 -2.9145 0.8921 41 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335883079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:56 Heat of formation + Delta-G solvation = -86.066887 kcal Electronic energy + Delta-G solvation = -21030.033947 eV Core-core repulsion = 17909.598127 eV Total energy + Delta-G solvation = -3120.435820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46199 -40.00947 -38.59158 -36.19570 -34.55039 -33.63940 -31.56925 -30.85249 -28.47649 -27.10029 -26.57506 -23.49148 -22.69012 -21.67175 -20.60179 -20.04292 -19.31034 -18.11597 -17.98834 -16.79935 -16.60311 -16.27602 -15.61963 -15.46043 -15.17149 -14.92033 -14.80754 -14.74323 -14.24190 -14.16193 -13.79258 -13.31782 -13.04522 -12.95785 -12.82763 -12.61530 -12.50688 -12.43770 -11.97070 -11.92886 -11.84083 -11.45483 -11.32645 -11.17575 -11.02296 -10.89065 -10.69566 -10.37534 -9.60838 -8.42294 -6.55452 1.26666 1.29571 1.42049 1.66129 1.91432 2.19162 2.78163 3.22311 3.55850 3.72096 3.83459 3.84732 3.98290 4.23433 4.33148 4.37449 4.41345 4.45436 4.53668 4.58103 4.66722 4.67516 4.67956 4.75164 4.81871 4.86972 4.87248 4.95560 5.07933 5.21367 5.27285 5.29658 5.31777 5.34838 5.42732 5.55821 5.62711 6.04618 6.52335 6.68347 6.83105 7.12586 7.18129 8.73274 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.004405 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.103795 B = 6354.521555 C = 6608.718654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.027 3.973 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.224 1.224 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.184 3.816 10 O -0.562 6.562 11 C 0.078 3.922 12 N -0.639 5.639 13 C 0.522 3.478 14 O -0.586 6.586 15 C -0.125 4.125 16 C -0.065 4.065 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.110 4.110 22 C 0.121 3.879 23 H 0.274 0.726 24 H 0.357 0.643 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 2.468 -9.291 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.174 4.174 3 Si 0.743 3.257 4 H -0.185 1.185 5 H -0.147 1.147 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.143 3.857 10 O -0.373 6.373 11 C -0.044 4.044 12 N -0.373 5.373 13 C 0.315 3.685 14 O -0.468 6.468 15 C -0.165 4.165 16 C -0.084 4.084 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.001 4.001 23 H 0.083 0.917 24 H 0.209 0.791 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 18.918 1.491 -8.981 20.994 hybrid contribution -0.923 0.807 0.400 1.289 sum 17.995 2.298 -8.581 20.068 Atomic orbital electron populations 1.70007 1.08143 1.28870 1.49290 1.25858 0.95617 1.03024 0.92859 0.86336 0.80373 0.79015 0.79985 1.18476 1.14743 1.20748 1.21365 0.89653 0.94566 1.52847 0.92873 1.20599 0.90765 0.89086 0.85203 1.86464 1.67339 1.26061 1.57431 1.24473 0.88452 0.91257 1.00240 1.50244 1.12782 1.32574 1.41695 1.21143 0.79752 0.84601 0.83035 1.90601 1.65741 1.31842 1.58635 1.21761 0.96996 1.00021 0.97673 1.20874 0.91774 0.99631 0.96147 1.21658 0.95879 1.00585 0.97636 1.21490 0.95405 0.99498 0.98947 1.21540 0.98724 1.00525 0.94587 1.21516 0.95045 1.01174 0.97759 1.21571 0.96338 0.99729 0.97091 1.23201 0.88217 0.96510 0.92219 0.91700 0.79083 0.87746 0.89162 0.87127 0.87961 0.92337 0.92257 0.93490 0.92995 0.92130 0.91188 0.91626 0.92456 0.90395 0.90841 0.91078 0.91655 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.46 13.96 21.45 0.30 -52.16 16 2 C 0.03 1.43 5.47 84.66 0.46 1.89 16 3 Si 0.92 36.87 24.31 68.60 1.67 38.54 16 4 H -0.26 -10.06 7.05 99.48 0.70 -9.35 16 5 H -0.22 -7.77 5.16 99.48 0.51 -7.26 16 6 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.55 -28.40 9.19 25.60 0.24 -28.17 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 9 C 0.18 8.14 1.06 -10.88 -0.01 8.13 16 10 O -0.56 -25.25 13.35 -148.98 -1.99 -27.24 16 11 C 0.08 2.87 7.10 86.44 0.61 3.48 16 12 N -0.64 -24.37 3.61 -839.63 -3.03 -27.41 16 13 C 0.52 18.90 7.77 87.65 0.68 19.59 16 14 O -0.59 -24.89 14.69 -3.03 -0.04 -24.94 16 15 C -0.13 -3.22 4.92 29.85 0.15 -3.07 16 16 C -0.07 -1.56 1.84 -10.79 -0.02 -1.58 16 17 C -0.12 -3.10 4.94 30.59 0.15 -2.95 16 18 C -0.12 -2.47 5.92 30.59 0.18 -2.29 16 19 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 20 C -0.12 -1.82 5.92 30.58 0.18 -1.64 16 21 C -0.11 -1.88 5.20 30.58 0.16 -1.72 16 22 C 0.12 5.07 8.23 86.49 0.71 5.79 16 23 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 24 H 0.36 14.82 3.57 -74.06 -0.26 14.56 16 25 H 0.10 3.63 8.09 -2.38 -0.02 3.61 16 26 H 0.09 2.93 6.83 -2.39 -0.02 2.92 16 27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 1.60 7.95 -2.39 -0.02 1.58 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.56 5.95 -2.38 -0.01 1.55 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.10 3.92 8.09 -2.39 -0.02 3.91 16 Total: -1.00 -63.61 317.29 1.12 -62.50 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.54 Total: 34.95 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 3.67 Total: -4.25 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -2.73 Total: -79.56 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.03 Total: -52.17 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 1.67 Total: 38.54 kcal Total: -63.61 1.12 -62.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335883079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.571 kcal (2) G-P(sol) polarization free energy of solvation -63.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds