Wall clock time and date at job start Mon Mar 30 2020 01:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48505 * 109.46881 * 239.99642 * 3 2 1 5 5 H 1.48496 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99561 * 3 2 1 7 7 C 1.40048 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99934 * 5.60296 * 9 7 2 11 11 N 1.34777 * 119.99540 * 185.59819 * 9 7 2 12 12 C 1.46933 * 120.62636 * 174.75185 * 11 9 7 13 13 C 1.53190 * 108.77049 * 233.63200 * 12 11 9 14 14 C 1.53048 * 109.31427 * 305.36271 * 13 12 11 15 15 O 1.42899 * 109.45992 * 181.39115 * 14 13 12 16 16 C 1.42901 * 114.00074 * 150.00122 * 15 14 13 17 17 C 1.54886 * 110.48758 * 93.23490 * 16 15 14 18 18 C 1.55237 * 102.58834 * 156.67877 * 17 16 15 19 19 C 1.54266 * 104.23099 * 322.08748 * 18 17 16 20 20 C 1.53882 * 106.59815 * 23.60802 * 19 18 17 21 21 C 1.53041 * 109.53675 * 61.36710 * 14 13 12 22 22 C 1.46921 * 120.63307 * 354.76911 * 11 9 7 23 23 H 0.97004 * 120.00368 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.58551 * 113.84137 * 12 11 9 25 25 H 1.08995 * 109.70057 * 353.48410 * 12 11 9 26 26 H 1.09002 * 109.49787 * 185.41488 * 13 12 11 27 27 H 1.08996 * 109.52958 * 65.33000 * 13 12 11 28 28 H 1.09005 * 109.45674 * 301.36222 * 14 13 12 29 29 H 1.09007 * 110.43189 * 330.69913 * 16 15 14 30 30 H 1.09000 * 110.76176 * 275.07256 * 17 16 15 31 31 H 1.09008 * 110.75539 * 38.44048 * 17 16 15 32 32 H 1.08998 * 110.46969 * 203.39688 * 18 17 16 33 33 H 1.08995 * 110.58570 * 80.83016 * 18 17 16 34 34 H 1.09000 * 110.03206 * 264.32706 * 19 18 17 35 35 H 1.08995 * 110.07914 * 142.91548 * 19 18 17 36 36 H 1.08998 * 110.03229 * 240.71645 * 20 19 18 37 37 H 1.08997 * 110.07190 * 119.31025 * 20 19 18 38 38 H 1.08995 * 109.49397 * 58.58704 * 21 14 13 39 39 H 1.08997 * 109.49607 * 178.68399 * 21 14 13 40 40 H 1.08999 * 109.58988 * 246.15491 * 22 11 9 41 41 H 1.09001 * 109.58691 * 6.44437 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0625 -2.4830 -0.1028 11 7 1.9441 -3.6448 0.1149 12 6 1.2182 -4.9170 0.2319 13 6 1.7160 -5.6558 1.4781 14 6 3.2374 -5.8048 1.4043 15 8 3.7016 -6.5222 2.5496 16 6 4.8819 -7.2926 2.3140 17 6 6.1451 -6.4755 2.6821 18 6 7.1974 -7.5838 2.9546 19 6 6.4002 -8.6973 3.6648 20 6 4.9279 -8.5121 3.2575 21 6 3.8864 -4.4192 1.3729 22 6 3.4131 -3.6662 0.1254 23 1 -0.4851 0.8400 -0.0004 24 1 1.4037 -5.5262 -0.6527 25 1 0.1496 -4.7231 0.3245 26 1 1.2556 -6.6428 1.5240 27 1 1.4489 -5.0880 2.3693 28 1 3.5052 -6.3516 0.5001 29 1 4.9252 -7.6136 1.2731 30 1 6.4528 -5.8434 1.8491 31 1 5.9717 -5.8787 3.5777 32 1 7.9881 -7.2074 3.6035 33 1 7.6166 -7.9526 2.0185 34 1 6.5038 -8.5994 4.7455 35 1 6.7563 -9.6759 3.3431 36 1 4.3170 -8.3243 4.1404 37 1 4.5691 -9.4003 2.7375 38 1 3.5988 -3.8625 2.2647 39 1 4.9707 -4.5259 1.3439 40 1 3.7776 -4.1735 -0.7678 41 1 3.7933 -2.6449 0.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336025399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:30 Heat of formation + Delta-G solvation = -99.539631 kcal Electronic energy + Delta-G solvation = -20944.777462 eV Core-core repulsion = 17823.757420 eV Total energy + Delta-G solvation = -3121.020042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.41572 -38.10758 -36.36705 -34.69606 -32.53542 -31.03451 -30.37291 -28.80987 -27.69422 -26.30777 -23.70599 -22.61253 -20.92506 -20.53653 -20.34782 -18.84325 -17.08620 -16.61635 -15.86721 -15.64177 -14.80801 -14.46934 -14.36529 -14.10917 -13.90387 -13.56917 -13.39683 -12.87644 -12.54190 -12.34229 -12.06749 -11.77934 -11.44536 -11.38453 -11.23046 -11.20640 -11.05843 -10.91495 -10.74657 -10.70069 -10.61693 -10.51385 -10.24386 -10.04751 -10.00662 -9.15488 -8.85022 -7.58143 -7.24208 -6.19700 -4.64700 3.15335 3.20374 3.21910 3.73108 4.08517 4.45040 4.49225 4.55211 4.57308 4.76863 5.11102 5.13736 5.21738 5.30925 5.35836 5.42185 5.47628 5.51382 5.65208 5.68660 5.71806 5.75681 5.84856 5.87148 5.97773 6.00492 6.09244 6.15172 6.22005 6.22655 6.30660 6.48732 6.55997 6.58266 6.80795 7.45128 7.49652 7.62479 8.13356 8.34758 9.01973 9.43147 10.57583 10.76055 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.004249 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.040581 B = 6588.053859 C = 7274.789502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.578 6.578 11 N -0.643 5.643 12 C 0.124 3.876 13 C -0.127 4.127 14 C 0.096 3.904 15 O -0.375 6.375 16 C 0.084 3.916 17 C -0.147 4.147 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.154 4.154 22 C 0.124 3.876 23 H 0.269 0.731 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.130 -13.796 4.509 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.381 5.381 12 C -0.001 4.001 13 C -0.166 4.166 14 C 0.038 3.962 15 O -0.294 6.294 16 C 0.026 3.974 17 C -0.185 4.185 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.193 4.193 22 C -0.001 4.001 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.155 -13.669 4.622 18.867 hybrid contribution 0.766 0.719 -0.172 1.065 sum 12.922 -12.950 4.450 18.828 Atomic orbital electron populations 1.70002 1.07074 1.27421 1.35207 1.25725 0.94608 1.00278 0.92575 0.86458 0.79873 0.81131 0.79460 1.19242 1.20537 1.19244 1.20942 0.93520 0.89291 1.54419 0.90958 1.18238 0.86882 0.82198 0.76088 1.90588 1.14463 1.86105 1.54897 1.48214 1.04615 1.06012 1.79302 1.21092 0.98831 0.85823 0.94318 1.22028 0.93316 1.00624 1.00627 1.22194 0.94793 0.91884 0.87302 1.87944 1.42590 1.62927 1.35938 1.23022 0.85213 0.90963 0.98224 1.23133 0.95131 0.97846 1.02356 1.22343 0.97669 0.95819 1.00407 1.22076 0.94641 0.98734 1.00515 1.22188 0.96871 0.96859 1.00198 1.22526 0.99517 0.96389 1.00877 1.21392 0.82678 1.01507 0.94508 0.92020 0.94082 0.89331 0.91551 0.91023 0.92731 0.91888 0.91263 0.90427 0.91552 0.91662 0.91670 0.91839 0.90562 0.91545 0.90852 0.91840 0.94206 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.08 11.84 55.55 0.66 -22.42 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.29 8.88 -35.63 -0.32 -15.60 16 8 H 0.07 1.84 5.64 -52.48 -0.30 1.54 16 9 C 0.56 16.05 7.61 -12.99 -0.10 15.95 16 10 O -0.58 -18.82 14.48 5.20 0.08 -18.74 16 11 N -0.64 -14.76 2.97 -174.43 -0.52 -15.27 16 12 C 0.12 2.46 6.41 -3.71 -0.02 2.43 16 13 C -0.13 -2.15 5.73 -26.61 -0.15 -2.30 16 14 C 0.10 1.46 2.57 -26.69 -0.07 1.39 16 15 O -0.37 -5.51 9.70 -35.23 -0.34 -5.85 16 16 C 0.08 0.97 3.31 -25.08 -0.08 0.89 16 17 C -0.15 -1.54 5.88 -24.55 -0.14 -1.69 16 18 C -0.12 -1.05 6.84 -24.88 -0.17 -1.22 16 19 C -0.12 -1.00 6.80 -25.61 -0.17 -1.18 16 20 C -0.12 -1.22 6.56 -25.61 -0.17 -1.39 16 21 C -0.15 -2.48 5.57 -26.61 -0.15 -2.63 16 22 C 0.12 2.31 6.35 -3.71 -0.02 2.29 16 23 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.09 1.97 7.04 -51.93 -0.37 1.60 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 0.77 7.39 -51.93 -0.38 0.39 16 29 H 0.06 0.69 7.42 -51.93 -0.39 0.31 16 30 H 0.07 0.71 7.10 -51.93 -0.37 0.34 16 31 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.89 5.30 -51.93 -0.28 1.62 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -33.30 320.08 -8.60 -41.90 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.61 Total: 1.25 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.67 Total: -0.70 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.14 Total: -37.69 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.27 Total: -24.60 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.30 -8.60 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336025399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.636 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds