Wall clock time and date at job start Mon Mar 30 2020 01:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48505 * 109.46881 * 239.99642 * 3 2 1 5 5 H 1.48496 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99561 * 3 2 1 7 7 C 1.40048 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99934 * 5.60296 * 9 7 2 11 11 N 1.34777 * 119.99540 * 185.59819 * 9 7 2 12 12 C 1.46933 * 120.62636 * 174.75185 * 11 9 7 13 13 C 1.53190 * 108.77049 * 233.63200 * 12 11 9 14 14 C 1.53048 * 109.31427 * 305.36271 * 13 12 11 15 15 O 1.42899 * 109.45992 * 181.39115 * 14 13 12 16 16 C 1.42901 * 114.00074 * 150.00122 * 15 14 13 17 17 C 1.54886 * 110.48758 * 93.23490 * 16 15 14 18 18 C 1.55237 * 102.58834 * 156.67877 * 17 16 15 19 19 C 1.54266 * 104.23099 * 322.08748 * 18 17 16 20 20 C 1.53882 * 106.59815 * 23.60802 * 19 18 17 21 21 C 1.53041 * 109.53675 * 61.36710 * 14 13 12 22 22 C 1.46921 * 120.63307 * 354.76911 * 11 9 7 23 23 H 0.97004 * 120.00368 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.58551 * 113.84137 * 12 11 9 25 25 H 1.08995 * 109.70057 * 353.48410 * 12 11 9 26 26 H 1.09002 * 109.49787 * 185.41488 * 13 12 11 27 27 H 1.08996 * 109.52958 * 65.33000 * 13 12 11 28 28 H 1.09005 * 109.45674 * 301.36222 * 14 13 12 29 29 H 1.09007 * 110.43189 * 330.69913 * 16 15 14 30 30 H 1.09000 * 110.76176 * 275.07256 * 17 16 15 31 31 H 1.09008 * 110.75539 * 38.44048 * 17 16 15 32 32 H 1.08998 * 110.46969 * 203.39688 * 18 17 16 33 33 H 1.08995 * 110.58570 * 80.83016 * 18 17 16 34 34 H 1.09000 * 110.03206 * 264.32706 * 19 18 17 35 35 H 1.08995 * 110.07914 * 142.91548 * 19 18 17 36 36 H 1.08998 * 110.03229 * 240.71645 * 20 19 18 37 37 H 1.08997 * 110.07190 * 119.31025 * 20 19 18 38 38 H 1.08995 * 109.49397 * 58.58704 * 21 14 13 39 39 H 1.08997 * 109.49607 * 178.68399 * 21 14 13 40 40 H 1.08999 * 109.58988 * 246.15491 * 22 11 9 41 41 H 1.09001 * 109.58691 * 6.44437 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0625 -2.4830 -0.1028 11 7 1.9441 -3.6448 0.1149 12 6 1.2182 -4.9170 0.2319 13 6 1.7160 -5.6558 1.4781 14 6 3.2374 -5.8048 1.4043 15 8 3.7016 -6.5222 2.5496 16 6 4.8819 -7.2926 2.3140 17 6 6.1451 -6.4755 2.6821 18 6 7.1974 -7.5838 2.9546 19 6 6.4002 -8.6973 3.6648 20 6 4.9279 -8.5121 3.2575 21 6 3.8864 -4.4192 1.3729 22 6 3.4131 -3.6662 0.1254 23 1 -0.4851 0.8400 -0.0004 24 1 1.4037 -5.5262 -0.6527 25 1 0.1496 -4.7231 0.3245 26 1 1.2556 -6.6428 1.5240 27 1 1.4489 -5.0880 2.3693 28 1 3.5052 -6.3516 0.5001 29 1 4.9252 -7.6136 1.2731 30 1 6.4528 -5.8434 1.8491 31 1 5.9717 -5.8787 3.5777 32 1 7.9881 -7.2074 3.6035 33 1 7.6166 -7.9526 2.0185 34 1 6.5038 -8.5994 4.7455 35 1 6.7563 -9.6759 3.3431 36 1 4.3170 -8.3243 4.1404 37 1 4.5691 -9.4003 2.7375 38 1 3.5988 -3.8625 2.2647 39 1 4.9707 -4.5259 1.3439 40 1 3.7776 -4.1735 -0.7678 41 1 3.7933 -2.6449 0.1465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336025399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:29 Heat of formation + Delta-G solvation = -120.947292 kcal Electronic energy + Delta-G solvation = -20945.705768 eV Core-core repulsion = 17823.757420 eV Total energy + Delta-G solvation = -3121.948348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69849 -39.55954 -37.78025 -36.20155 -34.66708 -32.61099 -31.89478 -29.56540 -28.75349 -28.16769 -25.28799 -24.12429 -22.25151 -21.65821 -21.14605 -20.50512 -18.59742 -18.13062 -17.56866 -16.74004 -16.29183 -15.98385 -15.62564 -15.56994 -15.51082 -14.75866 -14.44825 -14.23679 -14.04840 -13.77318 -13.46140 -13.19136 -13.02098 -12.89884 -12.67912 -12.56636 -12.28633 -12.16854 -12.05588 -12.01902 -11.89532 -11.65468 -11.45394 -11.36309 -11.26761 -10.91809 -10.32174 -9.77722 -9.12705 -8.29168 -6.84098 1.39622 1.43225 1.54683 2.23722 2.44466 2.67045 2.84821 3.60316 3.69443 3.74406 3.81775 3.93110 4.04055 4.16557 4.22260 4.34331 4.38347 4.51114 4.55852 4.61713 4.64756 4.71170 4.81206 4.83387 4.90974 4.95372 4.99459 5.02250 5.09888 5.14447 5.22787 5.25171 5.32269 5.39403 5.40920 5.49057 5.76631 6.14052 6.39304 6.44117 6.87730 7.41188 8.46281 8.67157 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.004249 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.040581 B = 6588.053859 C = 7274.789502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.995 3.005 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.647 5.647 12 C 0.122 3.878 13 C -0.118 4.118 14 C 0.104 3.896 15 O -0.390 6.390 16 C 0.074 3.926 17 C -0.149 4.149 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.144 4.144 22 C 0.120 3.880 23 H 0.274 0.726 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.377 -14.671 4.315 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.607 4.607 8 H 0.113 0.887 9 C 0.346 3.654 10 O -0.521 6.521 11 N -0.383 5.383 12 C -0.002 4.002 13 C -0.157 4.157 14 C 0.046 3.954 15 O -0.310 6.310 16 C 0.016 3.984 17 C -0.186 4.186 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.182 4.182 22 C -0.003 4.003 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.463 -14.605 4.440 21.728 hybrid contribution -0.234 0.867 -0.096 0.903 sum 15.229 -13.738 4.344 20.965 Atomic orbital electron populations 1.70189 1.09615 1.28968 1.36628 1.27013 0.95491 1.05007 0.91175 0.85106 0.78265 0.74774 0.80397 1.17562 1.20043 1.17775 1.21496 0.94843 0.89795 1.54516 0.88703 1.18674 0.86548 0.84254 0.75900 1.90534 1.16748 1.87434 1.57388 1.48101 1.06607 1.05594 1.78033 1.21200 0.96818 0.85164 0.96984 1.21887 0.95353 1.00818 0.97626 1.22016 0.93045 0.91760 0.88572 1.87935 1.44102 1.63234 1.35696 1.23324 0.84328 0.91325 0.99405 1.23121 0.95409 0.98343 1.01771 1.22342 0.97227 0.94990 1.01215 1.22082 0.93355 0.99573 1.00684 1.22214 0.97963 0.96552 0.99401 1.22415 1.01325 0.96283 0.98199 1.21597 0.79887 1.01795 0.97046 0.91632 0.91395 0.92793 0.89102 0.93761 0.90440 0.90644 0.90909 0.91965 0.90776 0.90456 0.91538 0.90208 0.91990 0.90492 0.93456 0.88793 0.91362 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.33 11.84 21.84 0.26 -51.07 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 41.11 29.56 68.60 2.03 43.14 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.57 -32.53 8.88 24.83 0.22 -32.31 16 8 H 0.10 4.79 5.64 -2.91 -0.02 4.77 16 9 C 0.54 32.12 7.61 86.36 0.66 32.78 16 10 O -0.63 -43.57 14.48 -4.31 -0.06 -43.64 16 11 N -0.65 -30.09 2.97 -823.99 -2.45 -32.54 16 12 C 0.12 4.90 6.41 86.36 0.55 5.45 16 13 C -0.12 -3.94 5.73 30.67 0.18 -3.76 16 14 C 0.10 2.94 2.57 30.62 0.08 3.02 16 15 O -0.39 -10.75 9.70 -148.98 -1.45 -12.19 16 16 C 0.07 1.50 3.31 31.66 0.10 1.61 16 17 C -0.15 -2.74 5.88 32.01 0.19 -2.55 16 18 C -0.12 -1.65 6.84 31.79 0.22 -1.43 16 19 C -0.12 -1.62 6.80 31.32 0.21 -1.40 16 20 C -0.12 -2.16 6.56 31.32 0.21 -1.95 16 21 C -0.14 -4.38 5.57 30.67 0.17 -4.21 16 22 C 0.12 4.32 6.35 86.37 0.55 4.87 16 23 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 25 H 0.05 2.53 7.04 -2.39 -0.02 2.51 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.89 7.39 -2.38 -0.02 1.87 16 29 H 0.08 1.37 7.42 -2.38 -0.02 1.36 16 30 H 0.07 1.27 7.10 -2.39 -0.02 1.25 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.25 8.07 -2.39 -0.02 1.24 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.30 6.38 -2.39 -0.02 2.29 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 3.24 5.30 -2.39 -0.01 3.22 16 Total: -1.00 -76.26 320.08 3.14 -73.12 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.01 Total: 21.01 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 3.80 Total: 2.16 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.19 Total: -83.60 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -1.51 Total: -55.83 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -76.26 3.14 -73.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336025399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds