Wall clock time and date at job start Mon Mar 30 2020 00:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.52998 * 109.46950 * 240.00462 * 2 1 3 5 5 C 1.50698 * 109.47245 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00092 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00154 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00238 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99919 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46927 * 90.00298 * 9 7 5 11 11 H 1.48498 * 109.47123 * 210.00372 * 9 7 5 12 12 H 1.48503 * 109.47167 * 330.00110 * 9 7 5 13 13 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 14 14 N 1.46497 * 109.46992 * 300.00045 * 13 2 1 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 2 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 N 1.46499 * 109.47257 * 180.27849 * 17 15 14 19 19 C 1.34599 * 126.44012 * 124.99824 * 18 17 15 20 20 N 1.31071 * 106.68205 * 180.02562 * 19 18 17 21 21 N 1.28849 * 107.99004 * 359.97438 * 20 19 18 22 22 N 1.28738 * 109.39356 * 359.73650 * 21 20 19 23 23 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 24 24 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 25 25 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 28 28 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 29 29 H 1.08995 * 109.47215 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47513 * 300.00092 * 4 2 1 31 31 H 0.96995 * 120.00192 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46838 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.46617 * 60.00267 * 13 2 1 34 34 H 0.97000 * 120.00580 * 0.02562 * 14 13 2 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 37 37 H 1.07994 * 126.65979 * 359.96188 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4819 -3.7320 8 7 1.4315 0.1378 -4.8058 9 14 2.9442 -2.0007 -3.9036 10 1 2.0856 -3.2115 -3.9485 11 1 3.7357 -1.9084 -5.1566 12 1 3.8651 -2.0896 -2.7419 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4916 3.6694 16 8 2.5743 -1.4777 3.7806 17 6 1.3798 0.2223 4.8999 18 7 1.8721 -0.4656 6.0960 19 6 2.5742 0.0858 7.1033 20 7 2.8118 -0.8727 7.9651 21 7 2.2827 -1.9563 7.5111 22 7 1.7090 -1.7125 6.3847 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7488 -1.2494 31 1 1.6658 -0.1935 -5.6868 32 1 3.1300 -0.7217 1.2489 33 1 1.6768 -1.7490 1.2490 34 1 0.9938 0.7577 2.3565 35 1 1.7439 1.2498 4.8960 36 1 0.2898 0.2231 4.9041 37 1 2.8829 1.1175 7.1851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345917067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:46 Heat of formation + Delta-G solvation = 76.847296 kcal Electronic energy + Delta-G solvation = -20060.015356 eV Core-core repulsion = 16875.396433 eV Total energy + Delta-G solvation = -3184.618923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.37176 -40.08993 -37.54860 -35.63544 -33.99547 -32.65633 -32.24313 -29.78323 -27.89006 -26.71498 -26.30913 -24.05534 -23.71318 -22.46447 -20.79141 -18.84246 -18.06566 -17.68547 -16.97545 -16.58098 -16.29614 -15.85240 -15.42148 -14.37678 -14.29390 -13.96308 -13.59636 -13.53940 -12.94887 -12.88162 -12.44768 -12.35681 -12.31558 -11.42488 -11.37543 -11.34896 -11.27065 -11.10746 -10.73034 -10.64296 -10.63847 -10.22950 -10.10913 -9.83470 -9.62421 -9.15690 -9.10510 -8.61285 -6.12103 -4.10192 1.00750 1.55312 2.07837 2.21107 2.85972 3.26101 3.34648 3.37724 3.82464 3.93765 4.24786 4.31829 4.38656 4.54614 5.16400 5.17976 5.19429 5.35962 5.43844 5.46298 5.77401 5.91569 5.93249 5.98817 6.13404 6.18925 6.44952 6.47513 6.73595 6.88547 6.92045 7.07900 7.22869 7.24574 7.69374 7.88642 8.40897 8.43471 8.91034 9.50387 11.00473 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043336 B = 0.003518 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.952779 B = 7957.532633 C = 8305.103384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.514 4.514 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.126 3.874 14 N -0.711 5.711 15 C 0.495 3.505 16 O -0.515 6.515 17 C 0.094 3.906 18 N -0.299 5.299 19 C 0.158 3.842 20 N -0.309 5.309 21 N -0.081 5.081 22 N -0.061 5.061 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.030 0.970 29 H 0.018 0.982 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.403 0.597 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 6.403 18.296 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.277 3.723 16 O -0.390 6.390 17 C -0.032 4.032 18 N -0.101 5.101 19 C -0.140 4.140 20 N -0.156 5.156 21 N -0.075 5.075 22 N -0.047 5.047 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.169 4.337 18.656 19.189 hybrid contribution 0.307 0.623 -0.898 1.135 sum -0.861 4.961 17.758 18.458 Atomic orbital electron populations 1.21792 0.94627 1.01428 1.00846 1.20713 0.95935 0.95942 0.93765 1.21784 1.00514 0.95475 1.00849 1.19592 0.96330 0.95550 0.92516 1.21047 1.32073 1.13450 0.88580 0.90373 1.24994 0.95638 0.96729 0.95981 1.69890 1.45754 1.40541 0.97943 0.86867 0.81323 0.83904 0.77719 1.20306 1.21432 1.19033 1.21748 0.99109 0.96242 0.82539 1.46039 1.53036 1.32061 1.05259 1.20095 0.82077 0.85548 0.84608 1.90858 1.36821 1.25175 1.86118 1.22053 1.03252 0.97091 0.80814 1.48160 1.36868 1.07563 1.17491 1.27730 0.97280 1.03184 0.85842 1.74983 1.19544 0.96291 1.24762 1.78684 1.08734 1.17892 1.02164 1.79039 1.18276 0.96066 1.11353 0.95043 0.90707 0.93270 0.93336 0.90692 0.95067 0.96336 0.96740 0.92700 0.91474 0.91359 0.76145 0.83907 0.84668 0.74872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.05 37.16 0.30 -1.66 16 2 C -0.06 -1.02 0.54 -154.51 -0.08 -1.10 16 3 C -0.13 -1.92 8.05 37.15 0.30 -1.62 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.10 8.20 -34.44 -0.28 -13.38 16 6 H 0.08 2.10 5.92 -52.49 -0.31 1.79 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.43 13.96 55.43 0.77 -25.65 16 9 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.13 1.81 4.56 -4.04 -0.02 1.80 16 14 N -0.71 -7.28 4.96 -60.30 -0.30 -7.58 16 15 C 0.49 5.35 7.85 -10.98 -0.09 5.26 16 16 O -0.52 -8.46 15.71 5.55 0.09 -8.38 16 17 C 0.09 0.52 6.96 -5.19 -0.04 0.48 16 18 N -0.30 -2.86 3.19 -63.74 -0.20 -3.07 16 19 C 0.16 1.28 12.79 -90.39 -1.16 0.12 16 20 N -0.31 -3.89 12.36 29.59 0.37 -3.53 16 21 N -0.08 -1.22 13.43 60.35 0.81 -0.41 16 22 N -0.06 -0.86 12.30 60.35 0.74 -0.12 16 23 H 0.03 0.35 6.86 -51.93 -0.36 0.00 16 24 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 28 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 29 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 30 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 2.91 6.16 -40.82 -0.25 2.66 16 35 H 0.14 0.08 8.08 -51.92 -0.42 -0.34 16 36 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.24 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -36.10 308.68 -3.84 -39.94 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -4.85 Total: -3.63 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.25 Total: -8.47 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 2.19 Total: -40.35 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.10 -3.84 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345917067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.785 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds