Wall clock time and date at job start Mon Mar 30 2020 00:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.52998 * 109.46950 * 240.00462 * 2 1 3 5 5 C 1.50698 * 109.47245 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00092 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00154 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00238 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99919 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46927 * 90.00298 * 9 7 5 11 11 H 1.48498 * 109.47123 * 210.00372 * 9 7 5 12 12 H 1.48503 * 109.47167 * 330.00110 * 9 7 5 13 13 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 14 14 N 1.46497 * 109.46992 * 300.00045 * 13 2 1 15 15 C 1.34777 * 119.99525 * 179.97438 * 14 13 2 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 13 18 18 N 1.46499 * 109.47257 * 180.27849 * 17 15 14 19 19 C 1.34599 * 126.44012 * 124.99824 * 18 17 15 20 20 N 1.31071 * 106.68205 * 180.02562 * 19 18 17 21 21 N 1.28849 * 107.99004 * 359.97438 * 20 19 18 22 22 N 1.28738 * 109.39356 * 359.73650 * 21 20 19 23 23 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 24 24 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 25 25 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 28 28 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 29 29 H 1.08995 * 109.47215 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.47513 * 300.00092 * 4 2 1 31 31 H 0.96995 * 120.00192 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46838 * 179.97438 * 13 2 1 33 33 H 1.09001 * 109.46617 * 60.00267 * 13 2 1 34 34 H 0.97000 * 120.00580 * 0.02562 * 14 13 2 35 35 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 36 36 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 37 37 H 1.07994 * 126.65979 * 359.96188 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4819 -3.7320 8 7 1.4315 0.1378 -4.8058 9 14 2.9442 -2.0007 -3.9036 10 1 2.0856 -3.2115 -3.9485 11 1 3.7357 -1.9084 -5.1566 12 1 3.8651 -2.0896 -2.7419 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8770 -0.4916 3.6694 16 8 2.5743 -1.4777 3.7806 17 6 1.3798 0.2223 4.8999 18 7 1.8721 -0.4656 6.0960 19 6 2.5742 0.0858 7.1033 20 7 2.8118 -0.8727 7.9651 21 7 2.2827 -1.9563 7.5111 22 7 1.7090 -1.7125 6.3847 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1300 -0.7208 -1.2496 30 1 1.6767 -1.7488 -1.2494 31 1 1.6658 -0.1935 -5.6868 32 1 3.1300 -0.7217 1.2489 33 1 1.6768 -1.7490 1.2490 34 1 0.9938 0.7577 2.3565 35 1 1.7439 1.2498 4.8960 36 1 0.2898 0.2231 4.9041 37 1 2.8829 1.1175 7.1851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345917067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:46 Heat of formation + Delta-G solvation = 48.929579 kcal Electronic energy + Delta-G solvation = -20061.225959 eV Core-core repulsion = 16875.396433 eV Total energy + Delta-G solvation = -3185.829526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.13769 -41.02422 -38.80871 -36.40279 -35.30212 -34.07078 -33.42307 -30.61041 -29.55284 -27.95021 -27.41707 -24.91911 -24.72110 -23.89622 -21.71018 -20.01266 -18.92125 -18.70440 -18.64020 -17.46193 -17.01763 -16.69317 -16.49200 -15.99974 -15.44861 -15.33200 -14.85415 -14.46783 -14.21829 -14.13894 -13.93040 -13.48303 -13.12586 -12.92980 -12.84267 -12.59207 -12.29353 -12.19286 -12.15995 -12.10900 -11.79757 -11.51623 -11.47920 -11.27665 -10.95999 -10.86769 -10.71783 -10.15225 -8.23863 -6.23447 0.30086 1.01492 1.27998 1.33818 1.37563 1.44538 1.46033 2.09130 2.37211 3.12106 3.31400 3.51846 3.65049 3.92094 4.03839 4.07075 4.08496 4.17187 4.41960 4.63788 4.70515 4.74775 4.78677 4.97861 5.02336 5.12809 5.23603 5.28881 5.35354 5.42650 5.44236 5.57888 5.72831 5.77901 6.36529 6.45077 6.84150 7.13239 7.39697 7.60349 8.91597 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043336 B = 0.003518 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.952779 B = 7957.532633 C = 8305.103384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.124 4.124 4 C -0.006 4.006 5 C -0.500 4.500 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.930 3.070 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.253 1.253 13 C 0.140 3.860 14 N -0.697 5.697 15 C 0.493 3.507 16 O -0.578 6.578 17 C 0.096 3.904 18 N -0.299 5.299 19 C 0.185 3.815 20 N -0.349 5.349 21 N -0.121 5.121 22 N -0.099 5.099 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.012 0.988 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.421 0.579 35 H 0.208 0.792 36 H 0.171 0.829 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 8.367 20.566 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.177 1.177 13 C 0.016 3.984 14 N -0.351 5.351 15 C 0.278 3.722 16 O -0.457 6.457 17 C -0.027 4.027 18 N -0.101 5.101 19 C -0.113 4.113 20 N -0.197 5.197 21 N -0.116 5.116 22 N -0.086 5.086 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.261 0.739 35 H 0.225 0.775 36 H 0.189 0.811 37 H 0.313 0.687 Dipole moment (debyes) X Y Z Total from point charges -1.364 6.336 20.940 21.920 hybrid contribution 0.323 0.140 -1.605 1.643 sum -1.041 6.477 19.335 20.417 Atomic orbital electron populations 1.21732 0.93659 1.01178 1.01708 1.20557 0.96630 0.96359 0.92271 1.21719 1.00202 0.94450 1.01774 1.19590 0.95870 0.95421 0.93544 1.21383 1.30131 1.12313 0.89960 0.92568 1.25792 0.97417 0.99671 0.96049 1.70024 1.48124 1.42622 0.98436 0.85964 0.79961 0.80660 0.77867 1.19948 1.21529 1.17730 1.21250 0.98263 0.95499 0.83407 1.45747 1.52969 1.32254 1.04107 1.20969 0.80632 0.84733 0.85828 1.90855 1.39667 1.28099 1.87041 1.22572 1.05334 0.98336 0.76417 1.48436 1.36541 1.06498 1.18619 1.28821 0.94221 1.04436 0.83794 1.74871 1.21007 0.96936 1.26838 1.78647 1.10204 1.19611 1.03112 1.78944 1.19425 0.98744 1.11491 0.90269 0.93721 0.94103 0.93835 0.93784 0.90098 0.96925 0.97291 0.92881 0.92741 0.93119 0.73895 0.77472 0.81132 0.68746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 8.05 71.98 0.58 -2.98 16 2 C -0.06 -1.77 0.54 -52.18 -0.03 -1.80 16 3 C -0.12 -3.41 8.05 71.98 0.58 -2.83 16 4 C -0.01 -0.27 3.11 29.85 0.09 -0.18 16 5 C -0.50 -25.96 8.20 25.60 0.21 -25.75 16 6 H 0.06 3.12 5.92 -2.91 -0.02 3.10 16 7 C 0.01 0.40 5.47 84.66 0.46 0.86 16 8 N -0.95 -57.29 13.96 21.45 0.30 -56.99 16 9 Si 0.93 43.63 27.47 68.60 1.88 45.52 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 13 C 0.14 3.76 4.56 86.38 0.39 4.15 16 14 N -0.70 -11.41 4.96 -463.07 -2.30 -13.71 16 15 C 0.49 8.87 7.85 87.66 0.69 9.56 16 16 O -0.58 -18.23 15.71 -3.04 -0.05 -18.28 16 17 C 0.10 0.51 6.96 85.63 0.60 1.11 16 18 N -0.30 -4.63 3.19 -355.56 -1.13 -5.76 16 19 C 0.18 2.21 12.79 180.27 2.31 4.52 16 20 N -0.35 -8.27 12.36 -60.30 -0.75 -9.02 16 21 N -0.12 -3.66 13.43 37.01 0.50 -3.16 16 22 N -0.10 -2.69 12.30 37.02 0.46 -2.23 16 23 H 0.08 1.46 6.86 -2.39 -0.02 1.44 16 24 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 25 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.49 6.62 -2.39 -0.02 1.47 16 28 H 0.08 1.39 6.86 -2.39 -0.02 1.37 16 29 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 30 H 0.01 0.38 7.57 -2.39 -0.02 0.37 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 3.58 6.16 -92.71 -0.57 3.01 16 35 H 0.21 -1.56 8.08 -2.38 -0.02 -1.58 16 36 H 0.17 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.30 -0.93 8.06 -2.91 -0.02 -0.96 16 Total: -1.00 -87.70 308.68 5.26 -82.44 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: 0.47 Total: -5.47 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 5.88 Total: -13.33 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.92 Total: -90.88 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -87.70 5.26 -82.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345917067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.372 kcal (2) G-P(sol) polarization free energy of solvation -87.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds