Wall clock time and date at job start Mon Mar 30 2020 00:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47185 * 299.99897 * 3 2 1 6 6 H 1.48507 * 109.47178 * 59.99792 * 3 2 1 7 7 C 1.37883 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00385 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 270.27463 * 10 9 7 12 12 C 1.53000 * 109.47637 * 269.72749 * 11 10 9 13 13 C 1.53004 * 117.49990 * 243.62355 * 12 11 10 14 14 C 1.52991 * 117.50171 * 174.99906 * 12 11 10 15 15 C 1.34784 * 119.99635 * 90.00174 * 10 9 7 16 16 O 1.21279 * 119.99925 * 359.97438 * 15 10 9 17 17 C 1.50700 * 119.99961 * 180.02562 * 15 10 9 18 18 O 1.42896 * 109.47293 * 179.97438 * 17 15 10 19 19 C 1.42897 * 114.00089 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.47307 * 179.97438 * 19 18 17 21 21 C 1.53003 * 117.50200 * 243.62299 * 20 19 18 22 22 C 1.52997 * 117.50105 * 174.99649 * 20 19 18 23 23 H 0.96998 * 120.00151 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47073 * 59.99595 * 9 7 2 25 25 H 1.09004 * 109.47082 * 300.00219 * 9 7 2 26 26 H 1.09002 * 109.47192 * 29.72648 * 11 10 9 27 27 H 1.08996 * 109.47342 * 149.72358 * 11 10 9 28 28 H 1.08997 * 115.54622 * 29.32410 * 12 11 10 29 29 H 1.08996 * 117.49643 * 359.97438 * 13 12 11 30 30 H 1.08996 * 117.50083 * 145.01508 * 13 12 11 31 31 H 1.09002 * 117.50054 * 214.97625 * 14 12 11 32 32 H 1.08997 * 117.50312 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.46932 * 300.00223 * 17 15 10 34 34 H 1.08997 * 109.47392 * 59.99562 * 17 15 10 35 35 H 1.09009 * 109.47304 * 299.99806 * 19 18 17 36 36 H 1.09000 * 109.47346 * 59.99699 * 19 18 17 37 37 H 1.09009 * 115.54795 * 29.33317 * 20 19 18 38 38 H 1.08999 * 117.49316 * 0.02562 * 21 20 19 39 39 H 1.09003 * 117.49728 * 145.01589 * 21 20 19 40 40 H 1.08997 * 117.49907 * 214.97776 * 22 20 19 41 41 H 1.08997 * 117.50017 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6836 -4.1655 -1.2681 12 6 1.7585 -5.2999 -1.7133 13 6 2.3564 -6.7054 -1.8026 14 6 2.0241 -5.9327 -3.0807 15 6 2.6408 -4.1249 1.1678 16 8 2.2471 -3.6636 2.2181 17 6 3.6205 -5.2700 1.1679 18 8 3.9304 -5.6317 2.5152 19 6 4.8560 -6.7144 2.6281 20 6 5.1132 -7.0136 4.1063 21 6 6.5346 -6.8046 4.6325 22 6 5.9906 -8.2216 4.4404 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.6896 -3.3827 -2.0265 27 1 3.6944 -4.5515 -1.1365 28 1 0.7206 -5.2137 -1.3916 29 1 3.4090 -6.8218 -1.5446 30 1 1.7120 -7.5442 -1.5396 31 1 1.1610 -6.2632 -3.6585 32 1 2.8576 -5.5407 -3.6634 33 1 3.1806 -6.1246 0.6538 34 1 4.5331 -4.9675 0.6543 35 1 4.4411 -7.5991 2.1449 36 1 5.7941 -6.4425 2.1442 37 1 4.2879 -6.7887 4.7820 38 1 7.2864 -6.4536 3.9256 39 1 6.6447 -6.4419 5.6546 40 1 5.7428 -8.7912 5.3361 41 1 6.3849 -8.8031 3.6071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349398578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:30 Heat of formation + Delta-G solvation = -51.776565 kcal Electronic energy + Delta-G solvation = -20421.430516 eV Core-core repulsion = 17302.481636 eV Total energy + Delta-G solvation = -3118.948880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -40.93555 -39.19737 -38.35629 -37.31908 -36.10981 -34.61808 -30.82102 -29.13925 -27.73187 -26.95013 -24.53908 -23.23351 -23.16894 -21.93360 -21.63412 -20.11323 -18.63741 -18.39979 -17.73306 -17.29205 -16.98572 -16.53173 -15.91725 -15.82357 -15.74949 -15.07805 -14.78289 -14.47087 -14.35916 -13.76915 -13.42077 -13.41808 -13.19058 -12.88782 -12.59010 -12.56740 -12.36905 -12.26669 -12.23619 -12.03766 -11.72371 -11.37079 -11.29778 -11.20328 -10.91313 -10.65805 -10.51054 -10.47325 -9.49277 -8.23492 -6.38373 1.35606 1.38738 1.50287 1.73924 1.92482 2.38023 2.74310 2.94072 3.06013 3.09075 3.60523 3.89146 3.93748 3.97603 4.03168 4.08229 4.15094 4.18198 4.28463 4.35458 4.36410 4.55033 4.71816 4.74086 4.78851 4.82898 4.85639 4.98130 5.02238 5.08715 5.20124 5.23323 5.26610 5.32128 5.34886 5.54457 5.80636 6.04490 6.16368 6.68596 6.74257 7.26491 7.43795 8.84240 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.005057 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.938856 B = 5535.565827 C = 7002.120382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.264 3.736 10 N -0.595 5.595 11 C 0.139 3.861 12 C -0.198 4.198 13 C -0.167 4.167 14 C -0.159 4.159 15 C 0.494 3.506 16 O -0.588 6.588 17 C 0.061 3.939 18 O -0.399 6.399 19 C 0.088 3.912 20 C -0.181 4.181 21 C -0.182 4.182 22 C -0.149 4.149 23 H 0.267 0.733 24 H 0.025 0.975 25 H -0.006 1.006 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.860 -18.581 -3.201 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.142 3.858 10 N -0.327 5.327 11 C 0.017 3.983 12 C -0.217 4.217 13 C -0.203 4.203 14 C -0.196 4.196 15 C 0.283 3.717 16 O -0.469 6.469 17 C -0.018 4.018 18 O -0.319 6.319 19 C 0.012 3.988 20 C -0.199 4.199 21 C -0.219 4.219 22 C -0.186 4.186 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.012 0.988 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.423 -18.137 -2.510 22.127 hybrid contribution -0.363 1.245 0.111 1.302 sum 12.060 -16.892 -2.399 20.894 Atomic orbital electron populations 1.70063 1.07624 1.28134 1.51034 1.25883 0.95817 1.03137 0.94356 0.85339 0.78790 0.78511 0.77989 1.19012 1.19176 1.20877 1.21743 0.93339 0.91907 1.51235 0.92724 1.18724 0.87869 0.83619 0.95551 1.48106 1.44842 1.33835 1.05907 1.21311 0.97079 0.95239 0.84675 1.22673 0.99867 0.95363 1.03809 1.23215 1.02511 0.93176 1.01442 1.23011 1.04084 1.02622 0.89916 1.21075 0.82643 0.84592 0.83421 1.90651 1.59830 1.63184 1.33203 1.22279 0.98060 0.96041 0.85430 1.87997 1.64955 1.53797 1.25128 1.22285 0.92288 0.88848 0.95398 1.22133 0.95588 1.06021 0.96202 1.23168 0.95529 1.00321 1.02850 1.23072 1.01074 0.90303 1.04165 0.92381 0.95666 0.98833 0.90359 0.88008 0.90206 0.86648 0.88240 0.88265 0.87119 0.87449 0.88012 0.90805 0.91405 0.89105 0.87876 0.88662 0.87512 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 8 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.26 14.73 5.16 85.63 0.44 15.17 16 10 N -0.60 -26.14 2.46 -826.18 -2.03 -28.17 16 11 C 0.14 4.31 5.49 86.38 0.47 4.78 16 12 C -0.20 -5.16 5.95 -10.80 -0.06 -5.23 16 13 C -0.17 -2.92 9.17 30.60 0.28 -2.64 16 14 C -0.16 -2.95 10.25 30.59 0.31 -2.64 16 15 C 0.49 22.27 7.75 87.66 0.68 22.95 16 16 O -0.59 -33.95 16.08 16.01 0.26 -33.69 16 17 C 0.06 1.87 4.98 71.24 0.35 2.22 16 18 O -0.40 -13.58 9.88 -129.94 -1.28 -14.86 16 19 C 0.09 1.95 6.22 71.98 0.45 2.40 16 20 C -0.18 -3.95 6.06 -10.79 -0.07 -4.02 16 21 C -0.18 -3.22 10.18 30.60 0.31 -2.91 16 22 C -0.15 -2.16 10.25 30.59 0.31 -1.84 16 23 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 24 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 25 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 26 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 27 H 0.10 2.36 6.18 -2.39 -0.01 2.35 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.12 1.51 7.88 -2.39 -0.02 1.49 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.55 6.84 -2.38 -0.02 2.53 16 34 H 0.10 2.45 7.39 -2.39 -0.02 2.44 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 37 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -80.10 346.00 4.44 -75.67 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.99 Total: 13.17 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.19 Total: -2.82 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.74 Total: -85.28 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -1.03 Total: -48.55 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -80.10 4.44 -75.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349398578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.889 kcal (2) G-P(sol) polarization free energy of solvation -80.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds