Wall clock time and date at job start Mon Mar 30 2020 00:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47134 * 304.99854 * 4 3 2 6 6 N 1.46501 * 109.47093 * 65.00312 * 4 3 2 7 7 C 1.34776 * 119.99950 * 204.99923 * 6 4 3 8 8 O 1.21288 * 119.99657 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00150 * 179.97438 * 7 6 4 10 10 C 1.53005 * 109.46975 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46975 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00154 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99894 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99965 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46884 * 89.99724 * 15 13 11 17 17 H 1.48498 * 109.47191 * 209.99772 * 15 13 11 18 18 H 1.48503 * 109.47001 * 330.00218 * 15 13 11 19 19 C 1.50697 * 109.46632 * 184.99786 * 4 3 2 20 20 N 1.33317 * 126.55417 * 284.99666 * 19 4 3 21 21 N 1.28997 * 107.35563 * 179.74234 * 20 19 4 22 22 N 1.28781 * 108.72759 * 0.43032 * 21 20 19 23 23 H 0.97001 * 125.45314 * 179.83474 * 22 21 20 24 24 N 1.28887 * 109.10175 * 359.56115 * 22 21 20 25 25 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46579 * 299.99548 * 1 2 3 27 27 H 1.08998 * 109.47691 * 59.99748 * 1 2 3 28 28 H 1.09006 * 109.46639 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47356 * 120.00872 * 2 1 3 30 30 H 1.08993 * 109.47193 * 60.00482 * 3 2 1 31 31 H 1.08996 * 109.47019 * 300.00151 * 3 2 1 32 32 H 0.96999 * 120.00240 * 24.99671 * 6 4 3 33 33 H 1.08997 * 109.46781 * 299.99480 * 9 7 6 34 34 H 1.09000 * 109.46766 * 60.00035 * 9 7 6 35 35 H 1.08994 * 109.47422 * 299.99976 * 10 9 7 36 36 H 1.09001 * 109.46617 * 60.00383 * 10 9 7 37 37 H 0.97006 * 119.99780 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 7 4.0578 0.8589 -1.2528 7 6 5.2797 0.2923 -1.3012 8 8 5.9757 0.2659 -0.3082 9 6 5.7813 -0.3085 -2.5890 10 6 7.1843 -0.8795 -2.3730 11 6 7.6861 -1.4797 -3.6611 12 1 7.0665 -1.4559 -4.5454 13 6 8.9362 -2.0592 -3.7105 14 7 9.6908 -2.0877 -2.6339 15 14 9.5579 -2.8038 -5.3070 16 1 10.2802 -1.7677 -6.0881 17 1 10.4803 -3.9272 -5.0030 18 1 8.4075 -3.3083 -6.0989 19 6 4.0724 2.8577 0.1231 20 7 4.0754 3.7858 -0.8340 21 7 4.5801 4.8594 -0.3274 22 7 4.8965 4.6286 0.8994 23 1 5.2974 5.2695 1.5072 24 7 4.5899 3.4114 1.1922 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.5014 0.8803 -2.0470 33 1 5.1086 -1.1061 -2.9040 34 1 5.8175 0.4618 -3.3594 35 1 7.8568 -0.0816 -2.0582 36 1 7.1484 -1.6497 -1.6026 37 1 10.5704 -2.4951 -2.6688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362949348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:23 Heat of formation + Delta-G solvation = 59.371278 kcal Electronic energy + Delta-G solvation = -20036.714578 eV Core-core repulsion = 16851.337837 eV Total energy + Delta-G solvation = -3185.376740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.47761 -39.43301 -36.70795 -34.21554 -33.56441 -33.41615 -32.75607 -30.98189 -29.13152 -25.78160 -24.91491 -24.56469 -22.30606 -21.66888 -20.95311 -19.73801 -19.05227 -17.13129 -16.91197 -15.97723 -15.87237 -15.60007 -14.88615 -14.40848 -14.35925 -13.93252 -13.77361 -13.09758 -12.74923 -12.34867 -12.31364 -12.13861 -11.81483 -11.68526 -11.30169 -11.21610 -11.14526 -11.06067 -10.91169 -10.86432 -10.58600 -10.35876 -9.93864 -9.65760 -9.19225 -9.06238 -8.99375 -8.30362 -5.94354 -3.98592 1.11777 2.03958 2.26521 3.17005 3.35078 3.39600 3.42171 3.45571 3.84263 4.39804 4.49555 4.63605 4.76983 4.83455 5.23186 5.30359 5.38717 5.40790 5.46490 5.56228 5.60251 5.68207 5.81782 5.89758 6.02946 6.14230 6.25074 6.27393 6.37564 6.60712 6.91020 7.76041 7.83683 7.87711 8.08682 8.20785 8.40260 8.73714 9.09866 9.64954 11.16654 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.004351 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.710353 B = 6433.407979 C = 7415.270188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.119 4.119 4 C 0.243 3.757 5 H 0.116 0.884 6 N -0.728 5.728 7 C 0.512 3.488 8 O -0.529 6.529 9 C -0.129 4.129 10 C 0.037 3.963 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.167 3.833 20 N -0.265 5.265 21 N -0.058 5.058 22 N -0.233 5.233 23 H 0.472 0.528 24 N -0.290 5.290 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.404 0.596 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 10.351 6.998 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.158 4.158 4 C 0.133 3.867 5 H 0.134 0.866 6 N -0.382 5.382 7 C 0.301 3.699 8 O -0.404 6.404 9 C -0.169 4.169 10 C 0.000 4.000 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.118 4.118 20 N -0.138 5.138 21 N -0.053 5.053 22 N -0.079 5.079 23 H 0.326 0.674 24 N -0.141 5.141 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.239 0.761 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.140 10.807 7.556 21.625 hybrid contribution 0.489 -0.233 -0.633 0.833 sum -16.651 10.574 6.923 20.904 Atomic orbital electron populations 1.21759 0.95552 1.01821 1.01725 1.21523 0.95867 0.95487 1.03290 1.21871 0.91543 0.98648 1.03712 1.19026 0.93753 0.82981 0.90953 0.86609 1.46195 1.19330 1.60425 1.12281 1.21704 0.79695 0.76411 0.92110 1.90687 1.55483 1.57008 1.37203 1.21873 1.02228 1.00367 0.92409 1.18897 0.87740 0.96377 0.97008 1.21224 1.01154 1.37766 0.96304 0.92544 1.25020 0.96896 0.96181 0.96261 1.70001 1.10331 1.44699 1.27887 0.86593 0.78773 0.78854 0.83742 1.20700 1.21239 1.19833 1.26323 0.99814 1.00167 0.85508 1.75809 1.16360 0.96060 1.25616 1.78928 1.12006 1.20489 0.93880 1.47790 1.40606 1.09227 1.10236 0.67394 1.74721 1.17574 0.94361 1.27478 0.92515 0.92888 0.92640 0.90979 0.91432 0.90402 0.90389 0.76056 0.89947 0.90075 0.96032 0.95760 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.03 5.82 -26.73 -0.16 -1.19 16 3 C -0.12 -1.06 4.74 -26.73 -0.13 -1.19 16 4 C 0.24 3.09 2.51 -69.08 -0.17 2.91 16 5 H 0.12 1.63 7.58 -51.93 -0.39 1.24 16 6 N -0.73 -10.13 4.52 -54.93 -0.25 -10.38 16 7 C 0.51 9.80 7.79 -10.99 -0.09 9.71 16 8 O -0.53 -12.44 15.65 5.55 0.09 -12.36 16 9 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 10 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 11 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.17 2.38 7.16 -156.62 -1.12 1.26 16 20 N -0.27 -3.93 12.50 32.45 0.41 -3.53 16 21 N -0.06 -0.77 13.48 60.35 0.81 0.05 16 22 N -0.23 -2.53 7.91 60.34 0.48 -2.06 16 23 H 0.47 2.78 8.96 -340.52 -3.05 -0.28 16 24 N -0.29 -3.93 12.36 32.47 0.40 -3.53 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.40 4.47 8.60 -40.82 -0.35 4.12 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -36.61 323.24 -7.42 -44.03 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.96 Total: -2.15 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.98 Total: -4.81 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 2.59 Total: -46.38 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.61 -7.42 -44.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362949348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.400 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds