Wall clock time and date at job start Mon Mar 30 2020 00:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.53004 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47134 * 304.99854 * 4 3 2 6 6 N 1.46501 * 109.47093 * 65.00312 * 4 3 2 7 7 C 1.34776 * 119.99950 * 204.99923 * 6 4 3 8 8 O 1.21288 * 119.99657 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00150 * 179.97438 * 7 6 4 10 10 C 1.53005 * 109.46975 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46975 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00154 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99894 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99965 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46884 * 89.99724 * 15 13 11 17 17 H 1.48498 * 109.47191 * 209.99772 * 15 13 11 18 18 H 1.48503 * 109.47001 * 330.00218 * 15 13 11 19 19 C 1.50697 * 109.46632 * 184.99786 * 4 3 2 20 20 N 1.33317 * 126.55417 * 284.99666 * 19 4 3 21 21 N 1.28997 * 107.35563 * 179.74234 * 20 19 4 22 22 N 1.28781 * 108.72759 * 0.43032 * 21 20 19 23 23 H 0.97001 * 125.45314 * 179.83474 * 22 21 20 24 24 N 1.28887 * 109.10175 * 359.56115 * 22 21 20 25 25 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46579 * 299.99548 * 1 2 3 27 27 H 1.08998 * 109.47691 * 59.99748 * 1 2 3 28 28 H 1.09006 * 109.46639 * 239.99918 * 2 1 3 29 29 H 1.09004 * 109.47356 * 120.00872 * 2 1 3 30 30 H 1.08993 * 109.47193 * 60.00482 * 3 2 1 31 31 H 1.08996 * 109.47019 * 300.00151 * 3 2 1 32 32 H 0.96999 * 120.00240 * 24.99671 * 6 4 3 33 33 H 1.08997 * 109.46781 * 299.99480 * 9 7 6 34 34 H 1.09000 * 109.46766 * 60.00035 * 9 7 6 35 35 H 1.08994 * 109.47422 * 299.99976 * 10 9 7 36 36 H 1.09001 * 109.46617 * 60.00383 * 10 9 7 37 37 H 0.97006 * 119.99780 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 7 4.0578 0.8589 -1.2528 7 6 5.2797 0.2923 -1.3012 8 8 5.9757 0.2659 -0.3082 9 6 5.7813 -0.3085 -2.5890 10 6 7.1843 -0.8795 -2.3730 11 6 7.6861 -1.4797 -3.6611 12 1 7.0665 -1.4559 -4.5454 13 6 8.9362 -2.0592 -3.7105 14 7 9.6908 -2.0877 -2.6339 15 14 9.5579 -2.8038 -5.3070 16 1 10.2802 -1.7677 -6.0881 17 1 10.4803 -3.9272 -5.0030 18 1 8.4075 -3.3083 -6.0989 19 6 4.0724 2.8577 0.1231 20 7 4.0754 3.7858 -0.8340 21 7 4.5801 4.8594 -0.3274 22 7 4.8965 4.6286 0.8994 23 1 5.2974 5.2695 1.5072 24 7 4.5899 3.4114 1.1922 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.5014 0.8803 -2.0470 33 1 5.1086 -1.1061 -2.9040 34 1 5.8175 0.4618 -3.3594 35 1 7.8568 -0.0816 -2.0582 36 1 7.1484 -1.6497 -1.6026 37 1 10.5704 -2.4951 -2.6688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362949348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:23 Heat of formation + Delta-G solvation = 31.485290 kcal Electronic energy + Delta-G solvation = -20037.923805 eV Core-core repulsion = 16851.337837 eV Total energy + Delta-G solvation = -3186.585967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.51609 -40.87732 -37.84845 -35.55448 -35.21942 -34.47866 -33.98876 -32.89374 -30.20764 -27.61941 -25.92210 -25.60784 -23.97196 -22.73279 -21.91743 -21.29632 -20.08751 -18.83928 -18.13873 -17.54920 -17.11258 -16.92612 -16.44524 -15.99677 -15.52641 -14.99688 -14.94456 -14.36275 -14.19398 -14.07789 -13.55367 -13.24052 -13.14614 -12.82031 -12.68537 -12.49326 -12.46333 -12.33048 -12.12713 -11.91548 -11.90603 -11.63355 -11.53929 -11.34346 -11.29752 -10.73673 -10.57025 -10.35463 -8.17344 -6.31182 0.09243 0.93955 1.40358 1.42956 1.45560 1.56621 1.70674 2.17506 2.44913 2.80224 3.15983 3.33310 3.75861 3.95426 4.09317 4.13666 4.42168 4.45445 4.52420 4.57207 4.59354 4.68384 4.80677 4.95084 5.05889 5.09778 5.30073 5.33109 5.43333 5.51590 5.53631 5.60717 5.63982 5.86031 6.18603 6.56314 6.87250 7.15368 7.30193 7.39237 8.95399 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.004351 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.710353 B = 6433.407979 C = 7415.270188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.242 3.758 5 H 0.100 0.900 6 N -0.702 5.702 7 C 0.516 3.484 8 O -0.582 6.582 9 C -0.119 4.119 10 C 0.043 3.957 11 C -0.542 4.542 12 H 0.077 0.923 13 C -0.006 4.006 14 N -0.939 5.939 15 Si 0.973 3.027 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.254 1.254 19 C 0.155 3.845 20 N -0.285 5.285 21 N -0.063 5.063 22 N -0.208 5.208 23 H 0.491 0.509 24 N -0.303 5.303 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.422 0.578 33 H 0.112 0.888 34 H 0.100 0.900 35 H -0.024 1.024 36 H -0.014 1.014 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.853 10.691 5.411 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.144 4.144 4 C 0.132 3.868 5 H 0.118 0.882 6 N -0.357 5.357 7 C 0.305 3.695 8 O -0.461 6.461 9 C -0.159 4.159 10 C 0.006 3.994 11 C -0.580 4.580 12 H 0.095 0.905 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.797 3.203 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.177 1.177 19 C -0.130 4.130 20 N -0.157 5.157 21 N -0.058 5.058 22 N -0.058 5.058 23 H 0.349 0.651 24 N -0.155 5.155 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.260 0.740 33 H 0.130 0.870 34 H 0.118 0.882 35 H -0.005 1.005 36 H 0.004 0.996 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.095 11.189 5.945 22.916 hybrid contribution 1.076 -0.257 -0.045 1.107 sum -18.019 10.932 5.900 21.886 Atomic orbital electron populations 1.21731 0.94195 1.02218 1.02389 1.21524 0.96991 0.94803 1.02818 1.21840 0.88297 0.99412 1.04888 1.19228 0.96098 0.82067 0.89368 0.88238 1.45849 1.17541 1.58548 1.13722 1.21410 0.80787 0.76466 0.90861 1.90675 1.57387 1.59357 1.38654 1.21644 0.98764 1.01729 0.93723 1.18678 0.91125 0.94029 0.95614 1.21723 1.01697 1.37391 0.97186 0.90526 1.26126 0.97250 0.96656 1.00334 1.70180 1.10884 1.45949 1.30862 0.85332 0.78529 0.77804 0.78651 1.19910 1.21158 1.17715 1.26506 1.00161 1.00636 0.85688 1.75779 1.17348 0.96438 1.26172 1.78856 1.12180 1.20219 0.94586 1.47832 1.39169 1.08883 1.09949 0.65064 1.74689 1.17820 0.95251 1.27737 0.92299 0.92320 0.91891 0.91318 0.92163 0.89210 0.89143 0.73962 0.86998 0.88162 1.00534 0.99591 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.83 5.82 30.59 0.18 -1.65 16 3 C -0.11 -1.68 4.74 30.60 0.14 -1.53 16 4 C 0.24 5.95 2.51 44.25 0.11 6.06 16 5 H 0.10 2.84 7.58 -2.39 -0.02 2.82 16 6 N -0.70 -18.77 4.52 -446.10 -2.01 -20.78 16 7 C 0.52 19.83 7.79 87.66 0.68 20.52 16 8 O -0.58 -28.43 15.65 -3.05 -0.05 -28.48 16 9 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 10 C 0.04 2.43 4.26 29.85 0.13 2.55 16 11 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 12 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 13 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 14 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 15 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 19 C 0.15 4.29 7.16 138.55 0.99 5.28 16 20 N -0.28 -8.11 12.50 -51.26 -0.64 -8.75 16 21 N -0.06 -1.61 13.48 37.02 0.50 -1.11 16 22 N -0.21 -4.29 7.91 37.00 0.29 -4.00 16 23 H 0.49 5.12 8.96 -347.67 -3.12 2.01 16 24 N -0.30 -8.00 12.36 -51.20 -0.63 -8.63 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.06 7.75 -2.38 -0.02 1.04 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.42 8.34 8.60 -92.71 -0.80 7.54 16 33 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 34 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 35 H -0.02 -1.53 8.10 -2.39 -0.02 -1.55 16 36 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 37 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -81.88 323.24 0.76 -81.11 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.82 Total: 8.93 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 3.81 Total: -5.11 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -2.21 Total: -103.05 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -81.88 0.76 -81.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362949348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.599 kcal (2) G-P(sol) polarization free energy of solvation -81.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds