Wall clock time and date at job start Mon Mar 30 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48506 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47531 * 59.99986 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21501 * 120.00435 * 0.02562 * 13 12 11 15 15 O 1.34639 * 119.99727 * 180.02562 * 13 12 11 16 16 C 1.45194 * 117.00099 * 179.97438 * 15 13 12 17 17 C 1.54265 * 110.03235 * 267.16163 * 16 15 13 18 18 C 1.54884 * 104.19651 * 217.10203 * 17 16 15 19 19 C 1.54887 * 102.75110 * 37.94342 * 18 17 16 20 20 C 1.53874 * 110.03575 * 149.99472 * 16 15 13 21 21 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 22 22 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 23 23 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 25 25 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 26 26 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 27 27 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 28 28 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 29 29 H 1.09008 * 110.01865 * 28.60515 * 16 15 13 30 30 H 1.08994 * 110.48618 * 335.78221 * 17 16 15 31 31 H 1.08998 * 110.48254 * 98.42653 * 17 16 15 32 32 H 1.09002 * 110.75931 * 279.62647 * 18 17 16 33 33 H 1.09003 * 110.91325 * 156.33112 * 18 17 16 34 34 H 1.09002 * 110.49184 * 203.37938 * 19 18 17 35 35 H 1.09001 * 110.48605 * 80.72935 * 19 18 17 36 36 H 1.08999 * 110.03399 * 238.56977 * 20 16 15 37 37 H 1.08997 * 110.03407 * 359.94875 * 20 16 15 38 38 H 1.09001 * 109.46843 * 293.57352 * 21 12 11 39 39 H 1.08997 * 109.71602 * 173.28846 * 21 12 11 40 40 H 1.08995 * 109.49643 * 301.32932 * 22 9 7 41 41 H 1.08994 * 109.49843 * 61.39691 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2936 -6.9563 -1.8203 15 8 -0.3728 -6.0471 -2.9699 16 6 -0.3281 -7.1849 -3.8707 17 6 0.5899 -6.8731 -5.0707 18 6 -0.1133 -7.5506 -6.2730 19 6 -1.6129 -7.2994 -5.9779 20 6 -1.7286 -7.4559 -4.4476 21 6 -0.4199 -3.8913 -1.2280 22 6 0.3707 -2.5793 -1.2487 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5568 0.8906 25 1 2.8883 -3.5914 0.8783 26 1 2.8564 -3.6194 -0.9015 27 1 2.1755 -5.8175 -0.0644 28 1 0.9394 -5.0725 0.9795 29 1 0.0346 -8.0660 -3.3413 30 1 0.6608 -5.7968 -5.2272 31 1 1.5794 -7.3030 -4.9157 32 1 0.1024 -8.6188 -6.2949 33 1 0.1800 -7.0795 -7.2112 34 1 -2.2309 -8.0403 -6.4850 35 1 -1.8977 -6.2918 -6.2808 36 1 -2.0453 -8.4688 -4.1988 37 1 -2.4421 -6.7339 -4.0505 38 1 -1.1142 -3.8866 -0.3877 39 1 -0.9750 -3.9982 -2.1599 40 1 -0.3218 -1.7377 -1.2603 41 1 0.9986 -2.5461 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397227464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:14 Heat of formation + Delta-G solvation = -103.749348 kcal Electronic energy + Delta-G solvation = -21071.348651 eV Core-core repulsion = 17950.146062 eV Total energy + Delta-G solvation = -3121.202589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34230 -38.33789 -36.88025 -35.34495 -33.52700 -31.22372 -30.06176 -28.89173 -28.13197 -26.14175 -23.30339 -22.36012 -21.13206 -20.82258 -20.00194 -19.05188 -17.59549 -16.72855 -16.25694 -15.82427 -15.54509 -15.01403 -14.53412 -14.08184 -13.51523 -13.41993 -13.14276 -12.87787 -12.65096 -12.55070 -12.19371 -11.86535 -11.60680 -11.33306 -11.29315 -11.23432 -10.96498 -10.81126 -10.71917 -10.62192 -10.40562 -10.28716 -10.16997 -9.94839 -9.58173 -9.18429 -8.93788 -8.38641 -8.06958 -6.03076 -4.09228 2.54700 3.22344 3.27511 3.36021 3.40038 4.25393 4.40537 4.41092 4.43987 4.78155 5.19730 5.26805 5.29207 5.33138 5.44679 5.46696 5.61318 5.71213 5.75605 5.79450 5.85418 5.88539 5.97578 6.06745 6.10520 6.14843 6.15560 6.37463 6.45170 6.63141 6.73541 6.86265 7.03220 7.15218 7.30535 7.67156 7.89891 7.92106 8.04407 8.40057 8.70808 8.94401 9.55986 11.02539 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004339 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.004742 B = 6451.329950 C = 6859.827252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.047 3.953 10 C -0.124 4.124 11 C 0.127 3.873 12 N -0.582 5.582 13 C 0.645 3.355 14 O -0.591 6.591 15 O -0.361 6.361 16 C 0.101 3.899 17 C -0.142 4.142 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.124 4.124 21 C 0.109 3.891 22 C -0.124 4.124 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -12.783 -8.687 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.028 3.972 10 C -0.163 4.163 11 C 0.006 3.994 12 N -0.322 5.322 13 C 0.400 3.600 14 O -0.482 6.482 15 O -0.276 6.276 16 C 0.045 3.955 17 C -0.179 4.179 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.013 4.013 22 C -0.162 4.162 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.743 -12.962 -8.687 16.046 hybrid contribution 0.490 0.972 0.016 1.088 sum -3.253 -11.990 -8.671 15.150 Atomic orbital electron populations 1.69844 1.05853 1.26370 1.50983 1.24958 0.94862 0.99066 0.95075 0.86561 0.80185 0.83851 0.77552 1.19835 1.21069 1.21051 1.21242 0.92991 0.90546 1.50194 0.92619 1.18660 0.92668 0.91729 0.94093 1.22046 0.98937 0.94086 1.01192 1.21752 0.90994 1.00023 0.86638 1.47168 1.37752 1.19862 1.27384 1.18077 0.79758 0.82732 0.79480 1.90896 1.43130 1.37522 1.76668 1.86362 1.56169 1.46994 1.38051 1.23314 0.96290 0.87391 0.88463 1.22803 0.98943 1.02211 0.93989 1.22440 0.95110 1.00610 0.97857 1.22349 0.96581 1.02131 0.94948 1.22260 0.95806 1.02359 0.95730 1.22016 0.91268 0.86847 1.01166 1.22028 1.00074 0.94644 0.99479 0.93021 0.95323 0.91768 0.92842 0.90095 0.91775 0.89427 0.90259 0.90799 0.91289 0.91073 0.91304 0.91088 0.90573 0.89981 0.92018 0.90794 0.87676 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 11.31 55.43 0.63 -23.86 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 10 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 11 C 0.13 2.36 6.43 -3.71 -0.02 2.33 16 12 N -0.58 -11.18 2.98 -178.53 -0.53 -11.72 16 13 C 0.65 12.38 8.43 54.06 0.46 12.83 16 14 O -0.59 -12.30 15.01 -19.27 -0.29 -12.59 16 15 O -0.36 -6.09 8.44 -40.32 -0.34 -6.43 16 16 C 0.10 1.37 3.25 -25.61 -0.08 1.29 16 17 C -0.14 -1.73 6.57 -25.08 -0.16 -1.89 16 18 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 19 C -0.12 -1.07 6.83 -25.07 -0.17 -1.25 16 20 C -0.12 -1.29 6.62 -25.61 -0.17 -1.46 16 21 C 0.11 2.08 6.44 -3.69 -0.02 2.06 16 22 C -0.12 -2.80 5.15 -26.61 -0.14 -2.94 16 23 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.26 7.15 -51.92 -0.37 0.88 16 30 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.32 6.94 -51.93 -0.36 0.96 16 40 H 0.11 2.63 6.03 -51.93 -0.31 2.31 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -29.02 323.36 -8.75 -37.77 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.86 Total: 0.58 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.21 Total: -4.46 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.09 Total: -35.58 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.63 Total: -19.02 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.02 -8.75 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397227464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.983 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds