Wall clock time and date at job start Mon Mar 30 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48506 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99490 * 3 2 1 6 6 H 1.48498 * 109.47531 * 59.99986 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21501 * 120.00435 * 0.02562 * 13 12 11 15 15 O 1.34639 * 119.99727 * 180.02562 * 13 12 11 16 16 C 1.45194 * 117.00099 * 179.97438 * 15 13 12 17 17 C 1.54265 * 110.03235 * 267.16163 * 16 15 13 18 18 C 1.54884 * 104.19651 * 217.10203 * 17 16 15 19 19 C 1.54887 * 102.75110 * 37.94342 * 18 17 16 20 20 C 1.53874 * 110.03575 * 149.99472 * 16 15 13 21 21 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 22 22 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 23 23 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 25 25 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 26 26 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 27 27 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 28 28 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 29 29 H 1.09008 * 110.01865 * 28.60515 * 16 15 13 30 30 H 1.08994 * 110.48618 * 335.78221 * 17 16 15 31 31 H 1.08998 * 110.48254 * 98.42653 * 17 16 15 32 32 H 1.09002 * 110.75931 * 279.62647 * 18 17 16 33 33 H 1.09003 * 110.91325 * 156.33112 * 18 17 16 34 34 H 1.09002 * 110.49184 * 203.37938 * 19 18 17 35 35 H 1.09001 * 110.48605 * 80.72935 * 19 18 17 36 36 H 1.08999 * 110.03399 * 238.56977 * 20 16 15 37 37 H 1.08997 * 110.03407 * 359.94875 * 20 16 15 38 38 H 1.09001 * 109.46843 * 293.57352 * 21 12 11 39 39 H 1.08997 * 109.71602 * 173.28846 * 21 12 11 40 40 H 1.08995 * 109.49643 * 301.32932 * 22 9 7 41 41 H 1.08994 * 109.49843 * 61.39691 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2936 -6.9563 -1.8203 15 8 -0.3728 -6.0471 -2.9699 16 6 -0.3281 -7.1849 -3.8707 17 6 0.5899 -6.8731 -5.0707 18 6 -0.1133 -7.5506 -6.2730 19 6 -1.6129 -7.2994 -5.9779 20 6 -1.7286 -7.4559 -4.4476 21 6 -0.4199 -3.8913 -1.2280 22 6 0.3707 -2.5793 -1.2487 23 1 -0.4851 0.8400 -0.0004 24 1 0.6246 -2.5568 0.8906 25 1 2.8883 -3.5914 0.8783 26 1 2.8564 -3.6194 -0.9015 27 1 2.1755 -5.8175 -0.0644 28 1 0.9394 -5.0725 0.9795 29 1 0.0346 -8.0660 -3.3413 30 1 0.6608 -5.7968 -5.2272 31 1 1.5794 -7.3030 -4.9157 32 1 0.1024 -8.6188 -6.2949 33 1 0.1800 -7.0795 -7.2112 34 1 -2.2309 -8.0403 -6.4850 35 1 -1.8977 -6.2918 -6.2808 36 1 -2.0453 -8.4688 -4.1988 37 1 -2.4421 -6.7339 -4.0505 38 1 -1.1142 -3.8866 -0.3877 39 1 -0.9750 -3.9982 -2.1599 40 1 -0.3218 -1.7377 -1.2603 41 1 0.9986 -2.5461 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397227464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:14 Heat of formation + Delta-G solvation = -118.579470 kcal Electronic energy + Delta-G solvation = -21071.991733 eV Core-core repulsion = 17950.146062 eV Total energy + Delta-G solvation = -3121.845671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75953 -39.63835 -38.27594 -36.64529 -35.38385 -33.04532 -31.75090 -29.73564 -29.16396 -27.92339 -25.01887 -24.04163 -22.57916 -21.65152 -21.14820 -20.66182 -19.15576 -18.35221 -17.99532 -17.20688 -16.57567 -16.43655 -16.13968 -15.40682 -14.98683 -14.91755 -14.46560 -14.35683 -14.30499 -14.02840 -13.48102 -13.20752 -13.13664 -12.89451 -12.82179 -12.43658 -12.16220 -12.09108 -12.04792 -12.01494 -11.76854 -11.67787 -11.56605 -11.43048 -11.26641 -11.02157 -10.81512 -10.40712 -9.69342 -8.07625 -6.20736 1.17393 1.41023 1.44300 1.54270 1.72003 2.44812 2.88072 3.19350 3.54300 3.56998 3.93960 4.04822 4.20917 4.25603 4.31956 4.44498 4.45412 4.46999 4.53492 4.56852 4.70109 4.73491 4.83367 4.87541 4.89052 4.96036 5.02611 5.16377 5.18025 5.20431 5.22449 5.38999 5.42018 5.49483 5.54478 5.65109 5.98113 6.10954 6.35502 6.39806 6.89045 7.21901 7.47202 8.96349 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004339 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.004742 B = 6451.329950 C = 6859.827252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.114 4.114 11 C 0.132 3.868 12 N -0.587 5.587 13 C 0.646 3.354 14 O -0.609 6.609 15 O -0.365 6.365 16 C 0.089 3.911 17 C -0.145 4.145 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.120 4.120 21 C 0.122 3.878 22 C -0.113 4.113 23 H 0.262 0.738 24 H 0.009 0.991 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -13.644 -9.596 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.153 4.153 11 C 0.011 3.989 12 N -0.326 5.326 13 C 0.401 3.599 14 O -0.502 6.502 15 O -0.279 6.279 16 C 0.034 3.966 17 C -0.183 4.183 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.157 4.157 21 C 0.000 4.000 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.227 -13.831 -9.608 17.363 hybrid contribution 0.649 1.220 0.282 1.410 sum -3.578 -12.612 -9.326 16.088 Atomic orbital electron populations 1.69952 1.06865 1.27099 1.51302 1.25638 0.95673 1.01994 0.94826 0.85639 0.79038 0.80182 0.77572 1.19593 1.20752 1.20593 1.21575 0.92980 0.92165 1.50475 0.93277 1.18633 0.93083 0.92104 0.93638 1.21894 0.98309 0.93982 1.01080 1.21721 0.91116 0.98791 0.87289 1.47191 1.37846 1.19900 1.27688 1.18138 0.79760 0.82345 0.79689 1.90877 1.43957 1.38188 1.77212 1.86374 1.55313 1.48497 1.37704 1.23744 0.98823 0.85925 0.88120 1.22819 0.98746 1.01569 0.95125 1.22444 0.94877 1.01177 0.96727 1.22365 0.96606 1.02873 0.93695 1.22316 0.93414 1.03269 0.96737 1.21819 0.90784 0.85082 1.02305 1.21796 0.99404 0.95815 0.98198 0.92919 0.97302 0.90790 0.93983 0.89452 0.90118 0.90442 0.91716 0.91763 0.89914 0.89861 0.88815 0.91333 0.88662 0.90479 0.91182 0.89396 0.90078 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.60 11.31 21.45 0.24 -50.35 16 2 C 0.02 0.95 5.30 84.65 0.45 1.40 16 3 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.53 -28.80 8.56 25.60 0.22 -28.58 16 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.04 2.12 2.07 -11.51 -0.02 2.10 16 10 C -0.11 -4.68 5.30 30.67 0.16 -4.52 16 11 C 0.13 4.77 6.43 86.36 0.56 5.32 16 12 N -0.59 -22.13 2.98 -949.17 -2.83 -24.96 16 13 C 0.65 24.37 8.43 129.79 1.09 25.47 16 14 O -0.61 -25.07 15.01 19.84 0.30 -24.77 16 15 O -0.36 -12.05 8.44 -55.48 -0.47 -12.52 16 16 C 0.09 2.32 3.25 31.32 0.10 2.42 16 17 C -0.14 -3.42 6.57 31.67 0.21 -3.21 16 18 C -0.11 -1.82 6.91 31.88 0.22 -1.60 16 19 C -0.12 -1.73 6.83 31.67 0.22 -1.52 16 20 C -0.12 -2.23 6.62 31.32 0.21 -2.03 16 21 C 0.12 4.61 6.44 86.36 0.56 5.17 16 22 C -0.11 -5.20 5.15 30.67 0.16 -5.04 16 23 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 3.08 7.00 -2.39 -0.02 3.07 16 28 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.08 2.17 7.15 -2.38 -0.02 2.16 16 30 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.54 7.96 -2.39 -0.02 1.52 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.09 3.08 6.94 -2.39 -0.02 3.06 16 40 H 0.08 4.13 6.03 -2.39 -0.01 4.12 16 41 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -61.74 323.36 4.38 -57.36 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.99 Total: 14.96 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.12 Total: -4.62 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.59 Total: -75.31 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.17 Total: -37.29 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -61.74 4.38 -57.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397227464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.220 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds