Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48496 * 109.46929 * 240.00343 * 3 2 1 5 5 H 1.48501 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46923 * 120.00643 * 3 2 1 7 7 C 1.37872 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47013 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.46025 * 174.99936 * 10 9 7 12 12 C 1.53197 * 109.31396 * 181.38819 * 11 10 9 13 13 N 1.46930 * 108.77426 * 305.36171 * 12 11 10 14 14 C 1.34773 * 120.62903 * 233.58878 * 13 12 11 15 15 O 1.21513 * 120.00527 * 359.97438 * 14 13 12 16 16 O 1.34639 * 119.99616 * 180.02562 * 14 13 12 17 17 C 1.45206 * 116.99892 * 179.97438 * 16 14 13 18 18 C 1.53777 * 113.61543 * 247.49543 * 17 16 14 19 19 C 1.53777 * 87.08229 * 220.01973 * 18 17 16 20 20 C 1.53781 * 113.61213 * 149.99789 * 17 16 14 21 21 C 1.46920 * 118.73626 * 53.86194 * 13 12 11 22 22 C 1.53040 * 109.46474 * 295.06734 * 10 9 7 23 23 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 60.00033 * 9 7 2 25 25 H 1.08991 * 109.46822 * 299.99524 * 9 7 2 26 26 H 1.09000 * 109.46107 * 55.02415 * 10 9 7 27 27 H 1.08993 * 109.50184 * 61.43278 * 11 10 9 28 28 H 1.09004 * 109.52453 * 301.35439 * 11 10 9 29 29 H 1.09003 * 109.58307 * 185.57966 * 12 11 10 30 30 H 1.08999 * 109.70638 * 65.22133 * 12 11 10 31 31 H 1.08994 * 112.85030 * 18.80449 * 17 16 14 32 32 H 1.09004 * 113.61651 * 334.57385 * 18 17 16 33 33 H 1.08999 * 113.61647 * 105.46760 * 18 17 16 34 34 H 1.08995 * 113.61253 * 270.88291 * 19 18 17 35 35 H 1.09000 * 113.61331 * 139.98078 * 19 18 17 36 36 H 1.08994 * 113.61653 * 254.53029 * 20 17 16 37 37 H 1.09002 * 113.61215 * 25.35397 * 20 17 16 38 38 H 1.09003 * 109.58862 * 65.92874 * 21 13 12 39 39 H 1.09001 * 109.58768 * 186.35105 * 21 13 12 40 40 H 1.09004 * 109.49628 * 298.57100 * 22 10 9 41 41 H 1.09002 * 109.49558 * 58.62594 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4842 -4.9837 0.1239 12 6 2.4847 -6.1434 0.1572 13 7 3.3498 -6.0556 -1.0271 14 6 3.4910 -7.1105 -1.8540 15 8 2.9002 -8.1469 -1.6231 16 8 4.2875 -7.0162 -2.9354 17 6 4.3925 -8.1918 -3.7812 18 6 5.7849 -8.8443 -3.7591 19 6 5.6202 -9.0625 -5.2723 20 6 4.6558 -7.8647 -5.2606 21 6 4.0628 -4.7981 -1.2895 22 6 3.0403 -3.6517 -1.3095 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.9297 -3.5556 0.8398 27 1 0.8178 -5.1026 -0.7303 28 1 0.8994 -4.9812 1.0439 29 1 1.9461 -7.0910 0.1469 30 1 3.0927 -6.0785 1.0595 31 1 3.5758 -8.8973 -3.6288 32 1 6.5872 -8.1525 -3.5023 33 1 5.8239 -9.7706 -3.1860 34 1 5.1401 -10.0072 -5.5275 35 1 6.5325 -8.8830 -5.8412 36 1 3.7834 -8.0003 -5.8998 37 1 5.1483 -6.9045 -5.4145 38 1 4.7967 -4.6231 -0.5027 39 1 4.5659 -4.8578 -2.2546 40 1 2.3593 -3.7830 -2.1504 41 1 3.5631 -2.7006 -1.4099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399399210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -78.769756 kcal Electronic energy + Delta-G solvation = -20673.506356 eV Core-core repulsion = 17553.386964 eV Total energy + Delta-G solvation = -3120.119393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.62432 -38.91967 -37.43397 -35.54059 -34.02446 -32.11788 -30.70934 -28.12071 -25.97065 -25.71933 -24.41157 -22.88725 -22.12573 -20.48054 -19.91634 -19.24670 -17.84988 -17.06364 -16.27240 -16.06882 -15.54950 -15.14080 -14.55157 -14.14813 -13.83642 -13.64355 -13.28279 -12.92786 -12.75233 -12.63854 -12.34913 -12.17303 -11.89997 -11.66318 -11.27985 -11.17792 -10.99764 -10.83608 -10.74541 -10.67552 -10.51964 -10.30449 -10.21186 -10.09906 -9.64416 -9.28619 -8.98556 -8.43199 -8.34899 -5.99990 -4.02162 2.28830 2.95019 3.32148 3.37293 3.38893 3.96254 4.27277 4.28971 4.45055 4.55522 4.64410 5.11036 5.26037 5.34849 5.35883 5.38958 5.45662 5.46006 5.53702 5.57004 5.64672 5.67188 5.75115 5.82680 5.91789 6.00295 6.07298 6.34560 6.37077 6.47229 6.58810 6.68075 6.96095 6.99985 7.10831 7.54008 7.66415 7.81269 7.99625 8.41857 8.42794 9.04164 9.61643 11.11254 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.003825 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.470060 B = 7319.014657 C = 7873.033207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.127 3.873 13 N -0.587 5.587 14 C 0.647 3.353 15 O -0.585 6.585 16 O -0.356 6.356 17 C 0.077 3.923 18 C -0.150 4.150 19 C -0.139 4.139 20 C -0.135 4.135 21 C 0.108 3.892 22 C -0.119 4.119 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.413 -15.514 -7.150 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.101 4.101 11 C -0.169 4.169 12 C 0.006 3.994 13 N -0.327 5.327 14 C 0.402 3.598 15 O -0.476 6.476 16 O -0.270 6.270 17 C 0.021 3.979 18 C -0.188 4.188 19 C -0.176 4.176 20 C -0.172 4.172 21 C -0.014 4.014 22 C -0.157 4.157 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.103 -15.739 -7.135 20.018 hybrid contribution 0.350 1.008 0.041 1.068 sum 10.454 -14.731 -7.094 19.406 Atomic orbital electron populations 1.69956 1.06059 1.26656 1.50842 1.25022 0.94803 0.99180 0.95449 0.86700 0.79604 0.83367 0.78570 1.20268 1.21382 1.20295 1.21205 0.92912 0.90969 1.50470 0.92617 1.19119 0.93595 0.90984 0.97221 1.21210 0.98040 0.94602 0.96200 1.22063 0.97562 0.94761 1.02473 1.21735 0.92058 1.00637 0.84943 1.47058 1.48336 1.11661 1.25600 1.18076 0.78382 0.83585 0.79772 1.90923 1.51713 1.29421 1.75498 1.86366 1.63120 1.41764 1.35738 1.24476 0.98752 0.86003 0.88649 1.23436 0.97356 1.01193 0.96823 1.22631 1.00208 0.98493 0.96314 1.23267 1.00208 0.99772 0.93984 1.22011 0.94828 0.82927 1.01603 1.21990 0.97538 0.97162 0.98980 0.92988 0.96627 0.96549 0.92225 0.91943 0.90750 0.89398 0.91358 0.87025 0.88991 0.90746 0.89656 0.90258 0.90452 0.88710 0.91493 0.89819 0.92247 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.99 8.39 -34.44 -0.29 -14.28 16 8 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.58 2.10 -90.58 -0.19 -1.77 16 11 C -0.13 -2.19 5.36 -26.61 -0.14 -2.34 16 12 C 0.13 1.93 6.43 -3.71 -0.02 1.90 16 13 N -0.59 -9.27 2.97 -178.29 -0.53 -9.80 16 14 C 0.65 10.72 8.43 54.05 0.46 11.17 16 15 O -0.59 -10.88 14.97 -19.28 -0.29 -11.17 16 16 O -0.36 -5.14 8.88 -40.32 -0.36 -5.50 16 17 C 0.08 0.89 4.26 -25.92 -0.11 0.78 16 18 C -0.15 -1.37 7.92 -25.92 -0.21 -1.58 16 19 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16 20 C -0.13 -1.19 7.92 -25.92 -0.21 -1.40 16 21 C 0.11 1.60 6.47 -3.49 -0.02 1.58 16 22 C -0.12 -2.10 5.21 -26.39 -0.14 -2.23 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.40 7.07 -51.93 -0.37 1.03 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.15 6.93 -51.93 -0.36 0.79 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -31.03 328.70 -8.68 -39.71 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.87 Total: -1.24 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.30 Total: -7.32 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.21 Total: -35.65 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.65 Total: -16.67 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.03 -8.68 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399399210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.055 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds