Wall clock time and date at job start Mon Mar 30 2020 01:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48496 * 109.46929 * 240.00343 * 3 2 1 5 5 H 1.48501 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46923 * 120.00643 * 3 2 1 7 7 C 1.37872 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47013 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.46025 * 174.99936 * 10 9 7 12 12 C 1.53197 * 109.31396 * 181.38819 * 11 10 9 13 13 N 1.46930 * 108.77426 * 305.36171 * 12 11 10 14 14 C 1.34773 * 120.62903 * 233.58878 * 13 12 11 15 15 O 1.21513 * 120.00527 * 359.97438 * 14 13 12 16 16 O 1.34639 * 119.99616 * 180.02562 * 14 13 12 17 17 C 1.45206 * 116.99892 * 179.97438 * 16 14 13 18 18 C 1.53777 * 113.61543 * 247.49543 * 17 16 14 19 19 C 1.53777 * 87.08229 * 220.01973 * 18 17 16 20 20 C 1.53781 * 113.61213 * 149.99789 * 17 16 14 21 21 C 1.46920 * 118.73626 * 53.86194 * 13 12 11 22 22 C 1.53040 * 109.46474 * 295.06734 * 10 9 7 23 23 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47103 * 60.00033 * 9 7 2 25 25 H 1.08991 * 109.46822 * 299.99524 * 9 7 2 26 26 H 1.09000 * 109.46107 * 55.02415 * 10 9 7 27 27 H 1.08993 * 109.50184 * 61.43278 * 11 10 9 28 28 H 1.09004 * 109.52453 * 301.35439 * 11 10 9 29 29 H 1.09003 * 109.58307 * 185.57966 * 12 11 10 30 30 H 1.08999 * 109.70638 * 65.22133 * 12 11 10 31 31 H 1.08994 * 112.85030 * 18.80449 * 17 16 14 32 32 H 1.09004 * 113.61651 * 334.57385 * 18 17 16 33 33 H 1.08999 * 113.61647 * 105.46760 * 18 17 16 34 34 H 1.08995 * 113.61253 * 270.88291 * 19 18 17 35 35 H 1.09000 * 113.61331 * 139.98078 * 19 18 17 36 36 H 1.08994 * 113.61653 * 254.53029 * 20 17 16 37 37 H 1.09002 * 113.61215 * 25.35397 * 20 17 16 38 38 H 1.09003 * 109.58862 * 65.92874 * 21 13 12 39 39 H 1.09001 * 109.58768 * 186.35105 * 21 13 12 40 40 H 1.09004 * 109.49628 * 298.57100 * 22 10 9 41 41 H 1.09002 * 109.49558 * 58.62594 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4842 -4.9837 0.1239 12 6 2.4847 -6.1434 0.1572 13 7 3.3498 -6.0556 -1.0271 14 6 3.4910 -7.1105 -1.8540 15 8 2.9002 -8.1469 -1.6231 16 8 4.2875 -7.0162 -2.9354 17 6 4.3925 -8.1918 -3.7812 18 6 5.7849 -8.8443 -3.7591 19 6 5.6202 -9.0625 -5.2723 20 6 4.6558 -7.8647 -5.2606 21 6 4.0628 -4.7981 -1.2895 22 6 3.0403 -3.6517 -1.3095 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.9297 -3.5556 0.8398 27 1 0.8178 -5.1026 -0.7303 28 1 0.8994 -4.9812 1.0439 29 1 1.9461 -7.0910 0.1469 30 1 3.0927 -6.0785 1.0595 31 1 3.5758 -8.8973 -3.6288 32 1 6.5872 -8.1525 -3.5023 33 1 5.8239 -9.7706 -3.1860 34 1 5.1401 -10.0072 -5.5275 35 1 6.5325 -8.8830 -5.8412 36 1 3.7834 -8.0003 -5.8998 37 1 5.1483 -6.9045 -5.4145 38 1 4.7967 -4.6231 -0.5027 39 1 4.5659 -4.8578 -2.2546 40 1 2.3593 -3.7830 -2.1504 41 1 3.5631 -2.7006 -1.4099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399399210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:20 Heat of formation + Delta-G solvation = -95.799595 kcal Electronic energy + Delta-G solvation = -20674.244826 eV Core-core repulsion = 17553.386964 eV Total energy + Delta-G solvation = -3120.857862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.79433 -39.96752 -38.65929 -36.66502 -35.74285 -33.98737 -32.04334 -29.89222 -26.95532 -26.64894 -25.81080 -24.23371 -23.69093 -21.88699 -20.76558 -20.58180 -19.10084 -18.43162 -18.14306 -17.27220 -16.54453 -16.29883 -16.19681 -15.31988 -15.24826 -14.97959 -14.77812 -14.41785 -14.01990 -13.75526 -13.47996 -13.43091 -13.19623 -12.97972 -12.76403 -12.49376 -12.45191 -12.33141 -12.19631 -12.07185 -11.79094 -11.66738 -11.42346 -11.31497 -11.08348 -11.03165 -10.85616 -10.49958 -9.75382 -8.14739 -6.24323 1.14857 1.43097 1.45393 1.52794 1.69078 2.44389 2.86689 3.19049 3.54196 3.54859 3.85030 3.89445 3.92640 3.99833 4.04416 4.17004 4.34779 4.39485 4.56810 4.64620 4.74264 4.77041 4.81324 4.87675 4.92551 4.96257 5.00551 5.04815 5.08930 5.18576 5.30430 5.33418 5.37872 5.50862 5.58183 5.60420 5.82530 5.91106 6.28079 6.31843 6.92543 7.18807 7.44484 8.97089 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.003825 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.470060 B = 7319.014657 C = 7873.033207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.032 3.968 10 C -0.074 4.074 11 C -0.123 4.123 12 C 0.133 3.867 13 N -0.590 5.590 14 C 0.645 3.355 15 O -0.611 6.611 16 O -0.358 6.358 17 C 0.054 3.946 18 C -0.147 4.147 19 C -0.124 4.124 20 C -0.131 4.131 21 C 0.119 3.881 22 C -0.112 4.112 23 H 0.261 0.739 24 H -0.017 1.017 25 H -0.011 1.011 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.969 -15.885 -7.636 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.086 0.914 9 C -0.005 4.005 10 C -0.093 4.093 11 C -0.161 4.161 12 C 0.013 3.987 13 N -0.329 5.329 14 C 0.400 3.600 15 O -0.503 6.503 16 O -0.271 6.271 17 C -0.001 4.001 18 C -0.185 4.185 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.002 4.002 22 C -0.151 4.151 23 H 0.069 0.931 24 H 0.002 0.998 25 H 0.007 0.993 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.687 -16.119 -7.634 21.887 hybrid contribution -0.497 1.092 0.165 1.211 sum 12.190 -15.027 -7.469 20.741 Atomic orbital electron populations 1.70109 1.07921 1.27558 1.52316 1.25970 0.95629 1.03300 0.95176 0.85570 0.78250 0.78413 0.79248 1.19042 1.21541 1.19098 1.21660 0.93683 0.91831 1.49412 0.91389 1.19015 0.94039 0.93097 0.94305 1.21060 0.97125 0.93526 0.97556 1.21950 0.97690 0.94319 1.02150 1.21700 0.91919 0.99374 0.85754 1.47152 1.48353 1.11824 1.25614 1.18213 0.78334 0.83349 0.80103 1.90900 1.52791 1.30454 1.76196 1.86372 1.62398 1.43188 1.35162 1.24931 0.99829 0.85484 0.89871 1.23457 0.95627 1.00964 0.98445 1.22627 1.00494 0.98156 0.94845 1.23314 1.00971 1.00727 0.91848 1.21963 0.93912 0.81080 1.03292 1.21866 0.97699 0.98274 0.97223 0.93070 0.99848 0.99277 0.91329 0.93594 0.90083 0.89498 0.88968 0.88525 0.88708 0.90631 0.88547 0.88388 0.89896 0.88506 0.89310 0.88456 0.93953 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.53 -28.71 8.39 25.60 0.21 -28.50 16 8 H 0.07 3.46 7.06 -2.91 -0.02 3.43 16 9 C 0.03 1.66 4.45 29.85 0.13 1.79 16 10 C -0.07 -2.85 2.10 -10.77 -0.02 -2.87 16 11 C -0.12 -4.12 5.36 30.67 0.16 -3.95 16 12 C 0.13 3.85 6.43 86.36 0.56 4.40 16 13 N -0.59 -17.74 2.97 -948.39 -2.81 -20.56 16 14 C 0.64 20.75 8.43 129.79 1.09 21.85 16 15 O -0.61 -22.52 14.97 19.80 0.30 -22.22 16 16 O -0.36 -9.92 8.88 -55.49 -0.49 -10.41 16 17 C 0.05 1.19 4.26 31.12 0.13 1.32 16 18 C -0.15 -2.41 7.92 31.12 0.25 -2.16 16 19 C -0.12 -1.45 8.08 31.12 0.25 -1.20 16 20 C -0.13 -2.08 7.92 31.12 0.25 -1.83 16 21 C 0.12 3.27 6.47 86.51 0.56 3.83 16 22 C -0.11 -3.90 5.21 30.82 0.16 -3.74 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.09 2.57 7.00 -2.39 -0.02 2.56 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.10 2.42 7.07 -2.39 -0.02 2.40 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.45 6.93 -2.39 -0.02 2.43 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 2.82 6.91 -2.39 -0.02 2.80 16 Total: -1.00 -67.66 328.70 4.49 -63.17 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.99 Total: 12.11 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 4.20 Total: -10.79 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.53 Total: -77.30 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.20 Total: -32.63 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.66 4.49 -63.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399399210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.632 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds