Wall clock time and date at job start Mon Mar 30 2020 01:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48503 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47128 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47058 * 60.00219 * 3 2 1 7 7 C 1.38957 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 203.01179 * 7 2 1 9 9 N 1.37098 * 119.99803 * 23.00466 * 7 2 1 10 10 C 1.34771 * 119.99737 * 49.88394 * 9 7 2 11 11 O 1.21298 * 120.00002 * 185.41436 * 10 9 7 12 12 C 1.50699 * 120.00374 * 5.41488 * 10 9 7 13 13 C 1.53001 * 109.47230 * 173.60089 * 12 10 9 14 14 H 1.08998 * 110.45652 * 307.60250 * 13 12 10 15 15 C 1.54510 * 110.51274 * 184.99959 * 13 12 10 16 16 C 1.54478 * 104.06468 * 241.21826 * 15 13 12 17 17 O 1.44429 * 104.80059 * 336.01668 * 16 15 13 18 18 C 1.44425 * 105.27422 * 40.51601 * 17 16 15 19 19 C 1.46494 * 120.00016 * 229.88233 * 9 7 2 20 20 C 1.54272 * 110.03268 * 57.16712 * 19 9 7 21 21 C 1.54888 * 104.19389 * 217.10584 * 20 19 9 22 22 C 1.54885 * 102.75227 * 37.94328 * 21 20 19 23 23 C 1.53873 * 110.03231 * 300.00107 * 19 9 7 24 24 H 0.97002 * 119.99768 * 2.72721 * 1 2 3 25 25 H 1.08999 * 109.47302 * 53.60306 * 12 10 9 26 26 H 1.09001 * 109.47006 * 293.59959 * 12 10 9 27 27 H 1.09004 * 110.51142 * 359.86048 * 15 13 12 28 28 H 1.09005 * 110.51205 * 122.56968 * 15 13 12 29 29 H 1.09000 * 110.37402 * 94.84951 * 16 15 13 30 30 H 1.08996 * 110.37117 * 217.19052 * 16 15 13 31 31 H 1.08998 * 110.37215 * 200.65213 * 18 17 16 32 32 H 1.09000 * 110.37549 * 78.31486 * 18 17 16 33 33 H 1.08996 * 110.01904 * 178.61026 * 19 9 7 34 34 H 1.08991 * 110.48647 * 335.78185 * 20 19 9 35 35 H 1.08999 * 110.48182 * 98.42751 * 20 19 9 36 36 H 1.09004 * 110.76044 * 279.62606 * 21 20 19 37 37 H 1.09002 * 110.75623 * 156.25837 * 21 20 19 38 38 H 1.09001 * 110.48924 * 203.37539 * 22 21 20 39 39 H 1.09006 * 110.48719 * 80.73274 * 22 21 20 40 40 H 1.09000 * 110.03890 * 238.57006 * 23 19 9 41 41 H 1.09003 * 110.03467 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0244 -1.2408 0.3651 9 7 1.4051 -2.3433 -0.4651 10 6 0.7851 -2.3376 -1.6617 11 8 0.1674 -3.3147 -2.0293 12 6 0.8592 -1.1175 -2.5430 13 6 0.2150 -1.4259 -3.8961 14 1 0.6450 -2.3308 -4.3254 15 6 0.3884 -0.2330 -4.8627 16 6 -1.0583 0.2017 -5.1859 17 8 -1.8593 -0.9765 -4.9487 18 6 -1.3160 -1.5709 -3.7497 19 6 1.4340 -3.5673 0.3392 20 6 0.8129 -3.3029 1.7264 21 6 1.6761 -4.1475 2.6963 22 6 3.1019 -3.9872 2.1129 23 6 2.8894 -4.0024 0.5849 24 1 -0.4850 0.8391 -0.0400 25 1 1.9026 -0.8399 -2.6923 26 1 0.3282 -0.2929 -2.0674 27 1 0.9309 0.5774 -4.3758 28 1 0.9042 -0.5482 -5.7698 29 1 -1.3682 1.0107 -4.5244 30 1 -1.1378 0.5109 -6.2280 31 1 -1.5934 -2.6232 -3.6886 32 1 -1.6653 -1.0337 -2.8680 33 1 0.8879 -4.3613 -0.1700 34 1 0.8800 -2.2448 1.9790 35 1 -0.2245 -3.6367 1.7498 36 1 1.3668 -5.1926 2.6785 37 1 1.6254 -3.7457 3.7083 38 1 3.7350 -4.8203 2.4183 39 1 3.5387 -3.0395 2.4279 40 1 3.0494 -5.0079 0.1957 41 1 3.5742 -3.3025 0.1061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401338488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:15 Heat of formation + Delta-G solvation = -95.221770 kcal Electronic energy + Delta-G solvation = -21890.484532 eV Core-core repulsion = 18769.651726 eV Total energy + Delta-G solvation = -3120.832805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36487 -38.46544 -36.61652 -34.14137 -32.73196 -31.41483 -29.23555 -27.96763 -27.39304 -25.77590 -24.52927 -22.38783 -20.44557 -20.00088 -19.32952 -19.11459 -16.69805 -15.83491 -15.77982 -15.21349 -15.01384 -14.81006 -14.53975 -14.26689 -13.80654 -13.29586 -12.90702 -12.65402 -12.45313 -12.11881 -11.74420 -11.49942 -11.22948 -11.17261 -10.98343 -10.77758 -10.72261 -10.54032 -10.50327 -10.38084 -10.36367 -10.05406 -10.03935 -9.97406 -9.66157 -9.28104 -8.77803 -8.25348 -7.33604 -6.45940 -4.21998 3.04844 3.17415 3.20036 4.01308 4.15307 4.47036 4.78006 4.83520 5.16931 5.26912 5.35087 5.36725 5.43319 5.56845 5.72704 5.81137 6.01029 6.07108 6.17104 6.21054 6.21681 6.28405 6.30834 6.32982 6.38082 6.47916 6.52881 6.56042 6.59152 6.71462 6.76385 6.77957 6.91608 7.09211 7.16082 7.28263 7.31206 7.42531 7.95475 8.64579 8.89285 9.60805 10.03974 10.57204 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.007537 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.746709 B = 3713.900604 C = 4666.456748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.051 3.949 3 Si 0.896 3.104 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.330 4.330 8 H 0.082 0.918 9 N -0.449 5.449 10 C 0.513 3.487 11 O -0.613 6.613 12 C -0.121 4.121 13 C -0.102 4.102 14 H 0.078 0.922 15 C -0.153 4.153 16 C 0.046 3.954 17 O -0.388 6.388 18 C 0.060 3.940 19 C 0.132 3.868 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.128 4.128 24 H 0.269 0.731 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 0.015 -1.622 3.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.156 4.156 3 Si 0.722 3.278 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.458 4.458 8 H 0.099 0.901 9 N -0.169 5.169 10 C 0.304 3.696 11 O -0.499 6.499 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.096 0.904 15 C -0.191 4.191 16 C -0.031 4.031 17 O -0.308 6.308 18 C -0.016 4.016 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.734 -0.428 -1.862 3.335 hybrid contribution 0.597 1.139 0.347 1.332 sum 3.331 0.711 -1.515 3.728 Atomic orbital electron populations 1.70100 1.06098 1.27922 1.44292 1.25493 0.94916 0.99855 0.95363 0.86362 0.80600 0.82593 0.78240 1.18990 1.20201 1.20680 1.19155 0.96958 0.84844 1.44869 0.90058 1.43441 1.50600 1.08930 1.13900 1.20242 0.79804 0.87850 0.81713 1.90477 1.46615 1.37544 1.75270 1.21768 1.01829 0.99639 0.92844 1.22276 0.96578 0.97618 0.95642 0.90397 1.23023 0.97428 0.98935 0.99718 1.23322 0.90056 0.89113 1.00624 1.89044 1.56351 1.39877 1.45496 1.23488 0.92065 0.99334 0.86711 1.21559 0.94177 0.89579 0.91946 1.22574 0.97375 1.01751 0.94157 1.22447 0.95836 0.99339 0.98494 1.22260 0.96630 1.00695 0.95825 1.22421 0.98324 1.00161 0.95718 0.92057 0.90505 0.87197 0.90613 0.91235 0.92719 0.89980 0.88611 0.92051 0.90445 0.89253 0.93117 0.92540 0.92447 0.92981 0.91726 0.92980 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.23 11.50 55.50 0.64 -20.59 16 2 C 0.05 1.19 3.49 -17.46 -0.06 1.13 16 3 Si 0.90 18.34 29.61 -169.99 -5.03 13.30 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.33 -7.84 6.86 -14.93 -0.10 -7.94 16 8 H 0.08 1.91 7.27 -52.49 -0.38 1.53 16 9 N -0.45 -10.73 2.38 -106.55 -0.25 -10.98 16 10 C 0.51 12.62 6.89 -10.99 -0.08 12.55 16 11 O -0.61 -16.14 14.24 5.54 0.08 -16.06 16 12 C -0.12 -2.63 3.27 -27.88 -0.09 -2.72 16 13 C -0.10 -1.98 2.71 -89.05 -0.24 -2.22 16 14 H 0.08 1.56 8.00 -51.93 -0.42 1.14 16 15 C -0.15 -2.44 6.74 -25.16 -0.17 -2.61 16 16 C 0.05 0.72 7.63 37.93 0.29 1.01 16 17 O -0.39 -7.41 11.65 -35.23 -0.41 -7.82 16 18 C 0.06 1.22 6.29 37.93 0.24 1.46 16 19 C 0.13 2.84 3.29 -66.81 -0.22 2.62 16 20 C -0.12 -2.44 6.41 -25.07 -0.16 -2.60 16 21 C -0.12 -2.00 6.91 -24.74 -0.17 -2.17 16 22 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 23 C -0.13 -2.34 6.25 -25.61 -0.16 -2.50 16 24 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 25 H 0.08 1.60 8.00 -51.93 -0.42 1.19 16 26 H 0.11 2.55 5.09 -51.93 -0.26 2.28 16 27 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.10 2.04 7.68 -51.93 -0.40 1.64 16 32 H 0.06 1.34 7.75 -51.93 -0.40 0.93 16 33 H 0.08 1.79 6.95 -51.93 -0.36 1.43 16 34 H 0.09 2.05 7.00 -51.93 -0.36 1.69 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.36 6.98 -51.93 -0.36 1.00 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -26.90 318.33 -7.99 -34.89 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.71 Total: 8.50 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.10 Total: -6.03 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.38 Total: -31.58 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.33 Total: -23.88 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.90 -7.99 -34.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401338488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.333 kcal (2) G-P(sol) polarization free energy of solvation -26.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds