Wall clock time and date at job start Mon Mar 30 2020 01:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 120.00232 * 2 1 4 4 H 1.48503 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47128 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47058 * 60.00219 * 3 2 1 7 7 C 1.38957 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 203.01179 * 7 2 1 9 9 N 1.37098 * 119.99803 * 23.00466 * 7 2 1 10 10 C 1.34771 * 119.99737 * 49.88394 * 9 7 2 11 11 O 1.21298 * 120.00002 * 185.41436 * 10 9 7 12 12 C 1.50699 * 120.00374 * 5.41488 * 10 9 7 13 13 C 1.53001 * 109.47230 * 173.60089 * 12 10 9 14 14 H 1.08998 * 110.45652 * 307.60250 * 13 12 10 15 15 C 1.54510 * 110.51274 * 184.99959 * 13 12 10 16 16 C 1.54478 * 104.06468 * 241.21826 * 15 13 12 17 17 O 1.44429 * 104.80059 * 336.01668 * 16 15 13 18 18 C 1.44425 * 105.27422 * 40.51601 * 17 16 15 19 19 C 1.46494 * 120.00016 * 229.88233 * 9 7 2 20 20 C 1.54272 * 110.03268 * 57.16712 * 19 9 7 21 21 C 1.54888 * 104.19389 * 217.10584 * 20 19 9 22 22 C 1.54885 * 102.75227 * 37.94328 * 21 20 19 23 23 C 1.53873 * 110.03231 * 300.00107 * 19 9 7 24 24 H 0.97002 * 119.99768 * 2.72721 * 1 2 3 25 25 H 1.08999 * 109.47302 * 53.60306 * 12 10 9 26 26 H 1.09001 * 109.47006 * 293.59959 * 12 10 9 27 27 H 1.09004 * 110.51142 * 359.86048 * 15 13 12 28 28 H 1.09005 * 110.51205 * 122.56968 * 15 13 12 29 29 H 1.09000 * 110.37402 * 94.84951 * 16 15 13 30 30 H 1.08996 * 110.37117 * 217.19052 * 16 15 13 31 31 H 1.08998 * 110.37215 * 200.65213 * 18 17 16 32 32 H 1.09000 * 110.37549 * 78.31486 * 18 17 16 33 33 H 1.08996 * 110.01904 * 178.61026 * 19 9 7 34 34 H 1.08991 * 110.48647 * 335.78185 * 20 19 9 35 35 H 1.08999 * 110.48182 * 98.42751 * 20 19 9 36 36 H 1.09004 * 110.76044 * 279.62606 * 21 20 19 37 37 H 1.09002 * 110.75623 * 156.25837 * 21 20 19 38 38 H 1.09001 * 110.48924 * 203.37539 * 22 21 20 39 39 H 1.09006 * 110.48719 * 80.73274 * 22 21 20 40 40 H 1.09000 * 110.03890 * 238.57006 * 23 19 9 41 41 H 1.09003 * 110.03467 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0244 -1.2408 0.3651 9 7 1.4051 -2.3433 -0.4651 10 6 0.7851 -2.3376 -1.6617 11 8 0.1674 -3.3147 -2.0293 12 6 0.8592 -1.1175 -2.5430 13 6 0.2150 -1.4259 -3.8961 14 1 0.6450 -2.3308 -4.3254 15 6 0.3884 -0.2330 -4.8627 16 6 -1.0583 0.2017 -5.1859 17 8 -1.8593 -0.9765 -4.9487 18 6 -1.3160 -1.5709 -3.7497 19 6 1.4340 -3.5673 0.3392 20 6 0.8129 -3.3029 1.7264 21 6 1.6761 -4.1475 2.6963 22 6 3.1019 -3.9872 2.1129 23 6 2.8894 -4.0024 0.5849 24 1 -0.4850 0.8391 -0.0400 25 1 1.9026 -0.8399 -2.6923 26 1 0.3282 -0.2929 -2.0674 27 1 0.9309 0.5774 -4.3758 28 1 0.9042 -0.5482 -5.7698 29 1 -1.3682 1.0107 -4.5244 30 1 -1.1378 0.5109 -6.2280 31 1 -1.5934 -2.6232 -3.6886 32 1 -1.6653 -1.0337 -2.8680 33 1 0.8879 -4.3613 -0.1700 34 1 0.8800 -2.2448 1.9790 35 1 -0.2245 -3.6367 1.7498 36 1 1.3668 -5.1926 2.6785 37 1 1.6254 -3.7457 3.7083 38 1 3.7350 -4.8203 2.4183 39 1 3.5387 -3.0395 2.4279 40 1 3.0494 -5.0079 0.1957 41 1 3.5742 -3.3025 0.1061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401338488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:15 Heat of formation + Delta-G solvation = -109.782080 kcal Electronic energy + Delta-G solvation = -21891.115914 eV Core-core repulsion = 18769.651726 eV Total energy + Delta-G solvation = -3121.464188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06420 -40.03647 -38.27891 -35.97301 -34.30493 -33.23117 -30.66709 -29.47569 -28.99052 -27.50676 -26.30910 -23.80601 -22.04737 -21.42538 -21.06593 -20.75850 -18.45828 -17.51748 -17.38542 -16.97037 -16.56468 -16.34334 -16.08658 -15.85907 -15.46597 -14.88300 -14.47613 -14.19154 -14.13581 -13.67476 -13.45647 -13.18237 -12.98399 -12.70163 -12.44473 -12.44307 -12.28005 -12.08359 -11.96297 -11.88752 -11.83276 -11.69734 -11.52056 -11.39210 -11.33130 -10.77727 -10.60702 -10.15904 -9.20176 -8.29594 -6.11829 1.42058 1.50009 1.60252 2.20209 2.35121 2.95658 3.01774 3.14527 3.72656 3.86540 3.87044 3.92655 4.01110 4.18522 4.25792 4.38574 4.50411 4.60917 4.67599 4.73816 4.78504 4.81950 4.82112 4.86616 4.90944 4.92512 5.01810 5.06970 5.08837 5.15452 5.18627 5.24137 5.40961 5.43049 5.51168 5.56616 5.63337 5.84661 6.11930 6.76837 7.04065 7.71625 8.16887 8.74506 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.007537 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.746709 B = 3713.900604 C = 4666.456748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.285 1.285 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.454 5.454 10 C 0.493 3.507 11 O -0.642 6.642 12 C -0.111 4.111 13 C -0.101 4.101 14 H 0.069 0.931 15 C -0.144 4.144 16 C 0.040 3.960 17 O -0.400 6.400 18 C 0.069 3.931 19 C 0.118 3.882 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.121 4.121 24 H 0.270 0.730 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 0.836 -1.718 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.211 1.211 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.173 5.173 10 C 0.284 3.716 11 O -0.531 6.531 12 C -0.151 4.151 13 C -0.120 4.120 14 H 0.088 0.912 15 C -0.182 4.182 16 C -0.036 4.036 17 O -0.319 6.319 18 C -0.008 4.008 19 C 0.014 3.986 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.146 4.146 23 C -0.160 4.160 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.504 0.394 -1.946 4.923 hybrid contribution -0.004 0.852 0.404 0.943 sum 4.501 1.246 -1.543 4.918 Atomic orbital electron populations 1.70192 1.07654 1.28737 1.45088 1.26146 0.95296 1.02416 0.94477 0.85443 0.79768 0.78673 0.78103 1.18047 1.19382 1.21148 1.19331 0.97112 0.85128 1.45121 0.89764 1.43673 1.49944 1.09718 1.13931 1.20850 0.79842 0.88508 0.82367 1.90442 1.47937 1.38767 1.75969 1.21671 1.02230 0.97794 0.93358 1.22234 0.95369 0.99108 0.95332 0.91215 1.23015 0.98030 0.97429 0.99713 1.23611 0.89264 0.87841 1.02909 1.89027 1.57180 1.41267 1.44447 1.23201 0.92964 0.97978 0.86647 1.21789 0.96476 0.88327 0.91987 1.22469 0.97535 1.00696 0.94857 1.22415 0.94895 0.99535 0.98116 1.22235 0.96839 1.01975 0.93506 1.22351 0.95306 1.00443 0.97854 0.91977 0.89670 0.88463 0.89643 0.88721 0.92429 0.86424 0.90562 0.94281 0.92848 0.92186 0.94537 0.90725 0.90667 0.89610 0.92055 0.91502 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.89 11.50 21.67 0.25 -44.64 16 2 C 0.02 1.00 3.49 84.93 0.30 1.30 16 3 Si 0.96 36.91 29.61 68.60 2.03 38.94 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.29 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.34 -16.21 6.86 84.04 0.58 -15.64 16 8 H 0.08 3.93 7.27 -2.91 -0.02 3.91 16 9 N -0.45 -22.26 2.38 -609.39 -1.45 -23.71 16 10 C 0.49 25.08 6.89 87.66 0.60 25.68 16 11 O -0.64 -35.45 14.24 -3.09 -0.04 -35.49 16 12 C -0.11 -4.88 3.27 29.85 0.10 -4.78 16 13 C -0.10 -3.94 2.71 -9.78 -0.03 -3.96 16 14 H 0.07 2.81 8.00 -2.39 -0.02 2.79 16 15 C -0.14 -4.27 6.74 31.61 0.21 -4.06 16 16 C 0.04 1.16 7.63 72.48 0.55 1.72 16 17 O -0.40 -15.04 11.65 -148.98 -1.74 -16.78 16 18 C 0.07 2.88 6.29 72.49 0.46 3.33 16 19 C 0.12 5.22 3.29 45.72 0.15 5.37 16 20 C -0.12 -4.83 6.41 31.67 0.20 -4.63 16 21 C -0.11 -3.42 6.91 31.88 0.22 -3.20 16 22 C -0.11 -3.18 6.83 31.67 0.22 -2.96 16 23 C -0.12 -4.33 6.25 31.32 0.20 -4.14 16 24 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 25 H 0.08 3.52 8.00 -2.39 -0.02 3.50 16 26 H 0.10 4.58 5.09 -2.39 -0.01 4.56 16 27 H 0.08 2.38 7.73 -2.38 -0.02 2.36 16 28 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.08 3.43 7.68 -2.39 -0.02 3.41 16 32 H 0.04 1.78 7.75 -2.39 -0.02 1.77 16 33 H 0.05 2.58 6.95 -2.39 -0.02 2.56 16 34 H 0.06 2.82 7.00 -2.39 -0.02 2.80 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 2.24 6.98 -2.39 -0.02 2.22 16 Total: -1.00 -59.72 318.33 3.80 -55.92 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 1.00 Total: 31.73 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 3.76 Total: -5.96 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.20 Total: -68.36 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -1.78 Total: -52.27 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Total: -59.72 3.80 -55.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401338488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.867 kcal (2) G-P(sol) polarization free energy of solvation -59.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds