Wall clock time and date at job start Mon Mar 30 2020 01:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.54269 * 110.02927 * 292.90336 * 17 16 15 19 19 C 1.54973 * 104.15990 * 217.14162 * 18 17 16 20 20 C 1.54885 * 102.77728 * 37.88612 * 19 18 17 21 21 C 1.53880 * 110.03065 * 175.69040 * 17 16 15 22 22 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 25 25 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 26 26 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 27 27 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 28 28 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 29 29 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 30 30 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 31 31 H 1.08994 * 110.02307 * 54.29319 * 17 16 15 32 32 H 1.09007 * 110.48516 * 335.78414 * 18 17 16 33 33 H 1.08996 * 110.48770 * 98.42925 * 18 17 16 34 34 H 1.09000 * 110.71680 * 279.57456 * 19 18 17 35 35 H 1.09000 * 110.92226 * 156.29689 * 19 18 17 36 36 H 1.09003 * 110.48920 * 203.40654 * 20 19 18 37 37 H 1.09001 * 110.60030 * 80.81947 * 20 19 18 38 38 H 1.09003 * 110.03024 * 238.56334 * 21 17 16 39 39 H 1.08997 * 110.02961 * 359.97438 * 21 17 16 40 40 H 1.09001 * 113.77016 * 221.05654 * 22 12 11 41 41 H 1.09005 * 113.86980 * 89.67729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 6 -0.8560 -6.9823 5.1145 19 6 -1.4071 -8.0030 6.1422 20 6 -1.3060 -9.3466 5.3784 21 6 -1.6817 -8.9857 3.9264 22 6 2.1615 -3.7405 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3764 -1.7802 -0.9678 25 1 1.3966 -2.5373 2.2104 26 1 -0.2731 -2.8605 1.5670 27 1 0.1879 -5.3004 3.3596 28 1 -1.0946 -5.3215 2.1255 29 1 -0.6840 -7.7370 1.7414 30 1 0.5985 -7.7151 2.9756 31 1 -2.3135 -6.9542 3.5038 32 1 0.2341 -6.9890 5.1175 33 1 -1.2329 -5.9823 5.3291 34 1 -2.4440 -7.7775 6.3915 35 1 -0.7906 -8.0220 7.0408 36 1 -2.0110 -10.0712 5.7860 37 1 -0.2896 -9.7378 5.4235 38 1 -2.7392 -9.1858 3.7536 39 1 -1.0737 -9.5618 3.2288 40 1 2.1758 -4.2745 -0.9513 41 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408298636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:34 Heat of formation + Delta-G solvation = -81.945692 kcal Electronic energy + Delta-G solvation = -20514.944846 eV Core-core repulsion = 17394.687734 eV Total energy + Delta-G solvation = -3120.257112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.56142 -38.51843 -37.23983 -33.92305 -32.94884 -32.20123 -29.25365 -28.75445 -27.51051 -25.30884 -25.22485 -22.83238 -20.80532 -19.90042 -19.55589 -18.14578 -17.37160 -16.25416 -15.96370 -15.38376 -15.26310 -14.98503 -14.72414 -14.14047 -13.85486 -13.42746 -13.25660 -12.62776 -12.58136 -12.30402 -12.09377 -11.78005 -11.55034 -11.26730 -11.21396 -11.11438 -11.05460 -11.01935 -10.79536 -10.68148 -10.54634 -10.49207 -10.31669 -10.28248 -9.58833 -9.14440 -8.76601 -8.39486 -7.80015 -6.39817 -4.49938 3.13812 3.22181 3.25209 3.28455 3.61544 4.18182 4.49896 4.55212 4.64557 4.84002 5.03610 5.19281 5.24810 5.35677 5.46537 5.54492 5.56197 5.58206 5.68234 5.70073 5.79142 5.85708 5.90017 5.98890 6.00607 6.11588 6.19787 6.21629 6.24805 6.36872 6.41261 6.50339 6.53854 6.66025 6.71334 7.10999 7.62866 7.82557 8.52967 8.55036 8.82603 9.21312 9.46267 10.66763 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.003709 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.236361 B = 7547.649878 C = 7930.876532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.238 3.762 10 O -0.573 6.573 11 C 0.077 3.923 12 N -0.634 5.634 13 C 0.526 3.474 14 O -0.569 6.569 15 C -0.133 4.133 16 C -0.093 4.093 17 C -0.094 4.094 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.121 4.121 22 C 0.110 3.890 23 H 0.273 0.727 24 H 0.392 0.608 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 -9.717 10.167 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.385 6.385 11 C -0.046 4.046 12 N -0.367 5.367 13 C 0.316 3.684 14 O -0.450 6.450 15 C -0.173 4.173 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.012 4.012 23 H 0.083 0.917 24 H 0.248 0.752 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.480 -10.837 9.784 15.010 hybrid contribution 0.077 1.538 0.283 1.566 sum -3.403 -9.299 10.067 14.121 Atomic orbital electron populations 1.69321 1.06183 1.28142 1.50280 1.25071 0.95022 0.99870 0.93087 0.86329 0.79843 0.81977 0.78353 1.20322 1.19552 1.20904 1.21529 0.93941 0.90040 1.51961 0.91082 1.19846 0.85449 0.91188 0.83857 1.86060 1.45202 1.50489 1.56797 1.24294 0.99916 0.77897 1.02472 1.50203 1.41902 1.04803 1.39796 1.20306 0.83354 0.81448 0.83338 1.90618 1.56790 1.40288 1.57265 1.21595 0.99027 0.98549 0.98124 1.21445 0.98910 0.94337 0.98403 1.21829 0.98626 0.95736 0.95034 1.22507 1.00750 0.98584 0.94152 1.22507 1.00852 0.95137 0.97820 1.22353 1.01250 0.97208 0.95428 1.22211 1.01088 0.95858 0.96739 1.23431 0.93793 0.92607 0.91396 0.91666 0.75227 0.90115 0.91424 0.89515 0.89406 0.91394 0.91380 0.91027 0.91393 0.91641 0.91727 0.91877 0.92092 0.91763 0.92043 0.91548 0.91282 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.57 11.09 55.43 0.61 -21.95 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.42 8.62 -34.44 -0.30 -13.72 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.72 1.44 -90.84 -0.13 5.59 16 10 O -0.57 -14.79 13.48 -35.23 -0.48 -15.26 16 11 C 0.08 1.64 8.01 -2.97 -0.02 1.62 16 12 N -0.63 -13.52 3.61 -178.30 -0.64 -14.16 16 13 C 0.53 10.72 8.06 -10.99 -0.09 10.63 16 14 O -0.57 -13.20 16.71 5.55 0.09 -13.11 16 15 C -0.13 -2.05 5.30 -27.88 -0.15 -2.20 16 16 C -0.09 -1.28 3.63 -26.73 -0.10 -1.38 16 17 C -0.09 -1.03 2.93 -89.50 -0.26 -1.30 16 18 C -0.12 -1.25 5.50 -25.03 -0.14 -1.39 16 19 C -0.13 -1.12 6.91 -24.70 -0.17 -1.29 16 20 C -0.12 -1.11 6.83 -25.07 -0.17 -1.29 16 21 C -0.12 -1.21 6.46 -25.61 -0.17 -1.37 16 22 C 0.11 2.44 8.22 -2.97 -0.02 2.41 16 23 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 24 H 0.39 10.16 6.46 45.56 0.29 10.45 16 25 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.09 1.21 7.48 -51.93 -0.39 0.82 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.01 8.10 -51.92 -0.42 0.59 16 30 H 0.07 0.99 7.98 -51.93 -0.41 0.57 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.73 7.77 -51.92 -0.40 0.33 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -27.81 332.24 -8.58 -36.39 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.34 Total: 10.77 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.81 Total: -2.00 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.03 Total: -36.11 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.38 Total: -28.38 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.81 -8.58 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408298636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.551 kcal (2) G-P(sol) polarization free energy of solvation -27.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds