Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.54269 * 110.02927 * 292.90336 * 17 16 15 19 19 C 1.54973 * 104.15990 * 217.14162 * 18 17 16 20 20 C 1.54885 * 102.77728 * 37.88612 * 19 18 17 21 21 C 1.53880 * 110.03065 * 175.69040 * 17 16 15 22 22 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 25 25 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 26 26 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 27 27 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 28 28 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 29 29 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 30 30 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 31 31 H 1.08994 * 110.02307 * 54.29319 * 17 16 15 32 32 H 1.09007 * 110.48516 * 335.78414 * 18 17 16 33 33 H 1.08996 * 110.48770 * 98.42925 * 18 17 16 34 34 H 1.09000 * 110.71680 * 279.57456 * 19 18 17 35 35 H 1.09000 * 110.92226 * 156.29689 * 19 18 17 36 36 H 1.09003 * 110.48920 * 203.40654 * 20 19 18 37 37 H 1.09001 * 110.60030 * 80.81947 * 20 19 18 38 38 H 1.09003 * 110.03024 * 238.56334 * 21 17 16 39 39 H 1.08997 * 110.02961 * 359.97438 * 21 17 16 40 40 H 1.09001 * 113.77016 * 221.05654 * 22 12 11 41 41 H 1.09005 * 113.86980 * 89.67729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 6 -0.8560 -6.9823 5.1145 19 6 -1.4071 -8.0030 6.1422 20 6 -1.3060 -9.3466 5.3784 21 6 -1.6817 -8.9857 3.9264 22 6 2.1615 -3.7405 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3764 -1.7802 -0.9678 25 1 1.3966 -2.5373 2.2104 26 1 -0.2731 -2.8605 1.5670 27 1 0.1879 -5.3004 3.3596 28 1 -1.0946 -5.3215 2.1255 29 1 -0.6840 -7.7370 1.7414 30 1 0.5985 -7.7151 2.9756 31 1 -2.3135 -6.9542 3.5038 32 1 0.2341 -6.9890 5.1175 33 1 -1.2329 -5.9823 5.3291 34 1 -2.4440 -7.7775 6.3915 35 1 -0.7906 -8.0220 7.0408 36 1 -2.0110 -10.0712 5.7860 37 1 -0.2896 -9.7378 5.4235 38 1 -2.7392 -9.1858 3.7536 39 1 -1.0737 -9.5618 3.2288 40 1 2.1758 -4.2745 -0.9513 41 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408298636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = -98.437722 kcal Electronic energy + Delta-G solvation = -20515.659994 eV Core-core repulsion = 17394.687734 eV Total energy + Delta-G solvation = -3120.972260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22162 -39.61260 -38.77953 -35.81158 -34.13399 -34.08167 -30.76566 -29.58161 -28.79141 -26.99526 -26.97058 -24.03785 -21.78911 -21.39001 -20.45688 -19.85710 -19.19715 -17.88101 -17.26170 -16.95436 -16.61984 -16.37008 -15.94048 -15.78984 -15.23402 -14.82498 -14.34825 -14.16959 -13.93340 -13.87170 -13.52839 -13.39353 -13.10963 -12.84919 -12.74179 -12.32778 -12.24611 -12.19242 -11.93946 -11.84077 -11.70724 -11.50263 -11.43654 -11.36006 -11.20845 -10.90173 -10.62410 -10.23304 -9.56183 -8.26556 -6.43480 1.46761 1.50497 1.59306 1.65895 1.98653 2.41118 2.96057 3.44804 3.69135 3.76134 3.79074 3.93676 4.13418 4.18443 4.20524 4.46257 4.53820 4.57030 4.61142 4.63186 4.71158 4.74431 4.80774 4.83037 4.88716 4.91555 5.00424 5.01433 5.12324 5.20195 5.23149 5.25700 5.31252 5.42100 5.51477 5.58312 5.73054 5.93313 6.61747 6.87874 7.16521 7.30424 7.47378 8.79381 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033041 B = 0.003709 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.236361 B = 7547.649878 C = 7930.876532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.034 3.966 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.218 3.782 10 O -0.588 6.588 11 C 0.093 3.907 12 N -0.636 5.636 13 C 0.517 3.483 14 O -0.602 6.602 15 C -0.123 4.123 16 C -0.086 4.086 17 C -0.090 4.090 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.123 4.123 22 C 0.107 3.893 23 H 0.276 0.724 24 H 0.388 0.612 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -9.377 11.852 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.177 3.823 10 O -0.400 6.400 11 C -0.030 4.030 12 N -0.370 5.370 13 C 0.309 3.691 14 O -0.485 6.485 15 C -0.162 4.162 16 C -0.124 4.124 17 C -0.108 4.108 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.015 4.015 23 H 0.086 0.914 24 H 0.243 0.757 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.903 -10.506 11.483 16.046 hybrid contribution 0.217 1.405 -0.302 1.453 sum -3.686 -9.102 11.181 14.881 Atomic orbital electron populations 1.69377 1.07073 1.28931 1.50252 1.25739 0.95780 1.02550 0.92627 0.85383 0.78428 0.78297 0.78476 1.19543 1.19707 1.20884 1.21738 0.94128 0.90876 1.52778 0.91103 1.20126 0.85554 0.91678 0.84940 1.86047 1.45676 1.50355 1.57945 1.24103 1.00209 0.77475 1.01183 1.50269 1.41768 1.05308 1.39619 1.21223 0.83641 0.80480 0.83750 1.90597 1.58133 1.41102 1.58642 1.21636 0.97651 0.99934 0.96994 1.21388 0.99327 0.92903 0.98746 1.21803 0.97777 0.96775 0.94456 1.22521 1.00354 0.99351 0.93977 1.22506 1.01425 0.94395 0.97661 1.22363 1.01466 0.97671 0.94662 1.22224 1.01559 0.94884 0.97390 1.23441 0.94660 0.91993 0.91449 0.91387 0.75658 0.88829 0.91130 0.87466 0.88393 0.92977 0.92472 0.90469 0.92129 0.91071 0.90904 0.91062 0.90771 0.92072 0.91080 0.92445 0.92687 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.40 11.09 21.45 0.24 -45.16 16 2 C 0.03 1.63 5.40 84.66 0.46 2.09 16 3 Si 0.97 38.86 29.54 68.60 2.03 40.88 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.56 -27.61 8.62 25.60 0.22 -27.39 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 10.44 1.44 -10.88 -0.02 10.43 16 10 O -0.59 -30.64 13.48 -148.98 -2.01 -32.65 16 11 C 0.09 3.87 8.01 86.48 0.69 4.56 16 12 N -0.64 -26.85 3.61 -840.23 -3.03 -29.88 16 13 C 0.52 20.88 8.06 87.66 0.71 21.59 16 14 O -0.60 -28.18 16.71 -3.04 -0.05 -28.23 16 15 C -0.12 -3.63 5.30 29.85 0.16 -3.47 16 16 C -0.09 -2.29 3.63 30.60 0.11 -2.18 16 17 C -0.09 -1.83 2.93 -10.07 -0.03 -1.86 16 18 C -0.12 -2.28 5.50 31.70 0.17 -2.10 16 19 C -0.12 -1.87 6.91 31.91 0.22 -1.65 16 20 C -0.12 -1.96 6.83 31.67 0.22 -1.74 16 21 C -0.12 -2.25 6.46 31.32 0.20 -2.05 16 22 C 0.11 4.77 8.22 86.48 0.71 5.48 16 23 H 0.28 12.96 8.31 -92.71 -0.77 12.18 16 24 H 0.39 20.35 6.46 -74.06 -0.48 19.87 16 25 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 26 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.11 2.75 7.48 -2.39 -0.02 2.74 16 28 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.05 1.55 8.10 -2.38 -0.02 1.53 16 30 H 0.06 1.65 7.98 -2.39 -0.02 1.63 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.20 7.77 -2.38 -0.02 1.18 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 40 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.10 4.06 8.09 -2.38 -0.02 4.04 16 Total: -1.00 -58.22 332.24 1.52 -56.70 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.52 Total: 36.64 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 3.82 Total: 1.70 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.79 Total: -75.04 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -2.06 Total: -60.89 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -58.22 1.52 -56.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408298636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.740 kcal (2) G-P(sol) polarization free energy of solvation -58.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds