Wall clock time and date at job start Mon Mar 30 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48506 * 109.46941 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47207 * 119.99775 * 3 2 1 6 6 H 1.48502 * 109.47137 * 240.00012 * 3 2 1 7 7 C 1.38953 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99526 * 191.50147 * 7 2 1 9 9 N 1.37092 * 119.99950 * 11.49269 * 7 2 1 10 10 C 1.34783 * 119.99563 * 197.00646 * 9 7 2 11 11 O 1.21289 * 120.00312 * 2.77677 * 10 9 7 12 12 C 1.50703 * 119.99596 * 182.77511 * 10 9 7 13 13 H 1.09003 * 109.46864 * 79.64728 * 12 10 9 14 14 O 1.42903 * 109.47388 * 319.64955 * 12 10 9 15 15 C 1.52997 * 109.46976 * 199.64886 * 12 10 9 16 16 C 1.53004 * 109.47073 * 294.28885 * 15 12 10 17 17 C 1.52997 * 109.47073 * 179.97438 * 16 15 12 18 18 C 1.53000 * 109.47286 * 60.00193 * 17 16 15 19 19 C 1.52994 * 109.47244 * 300.00097 * 18 17 16 20 20 C 1.53001 * 109.46916 * 174.29120 * 15 12 10 21 21 C 1.46501 * 120.00362 * 17.00875 * 9 7 2 22 22 C 1.52997 * 117.49878 * 129.18161 * 21 9 7 23 23 C 1.52995 * 117.49513 * 60.52130 * 21 9 7 24 24 H 0.96993 * 120.00305 * 354.98112 * 1 2 3 25 25 H 0.96697 * 113.99572 * 300.00178 * 14 12 10 26 26 H 1.08996 * 109.47023 * 54.29111 * 15 12 10 27 27 H 1.08996 * 109.47380 * 300.00007 * 16 15 12 28 28 H 1.09001 * 109.46719 * 60.00371 * 16 15 12 29 29 H 1.09002 * 109.47409 * 300.00039 * 17 16 15 30 30 H 1.09001 * 109.47411 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47601 * 179.97438 * 18 17 16 32 32 H 1.09002 * 109.47023 * 59.99609 * 18 17 16 33 33 H 1.09002 * 109.47450 * 299.99800 * 19 18 17 34 34 H 1.08996 * 109.47700 * 179.97438 * 19 18 17 35 35 H 1.08996 * 109.47497 * 299.99657 * 20 15 12 36 36 H 1.09002 * 109.46953 * 60.00428 * 20 15 12 37 37 H 1.09001 * 115.54795 * 274.85444 * 21 9 7 38 38 H 1.08998 * 117.49954 * 359.97438 * 22 21 9 39 39 H 1.09000 * 117.49835 * 145.02277 * 22 21 9 40 40 H 1.09002 * 117.49528 * 214.97685 * 23 21 9 41 41 H 1.08998 * 117.50333 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0726 -1.2128 0.1860 9 7 1.3440 -2.3786 -0.2376 10 6 1.9154 -3.5542 0.0914 11 8 2.9955 -3.5703 0.6429 12 6 1.2120 -4.8487 -0.2261 13 1 1.3615 -5.0950 -1.2773 14 8 -0.1857 -4.7081 0.0360 15 6 1.7845 -5.9675 0.6464 16 6 3.2456 -6.2145 0.2652 17 6 3.8184 -7.3328 1.1382 18 6 3.0109 -8.6140 0.9205 19 6 1.5499 -8.3671 1.3015 20 6 0.9769 -7.2485 0.4280 21 6 0.0127 -2.3567 -0.8485 22 6 -0.2222 -3.2571 -2.0630 23 6 -0.1144 -1.7408 -2.2433 24 1 -0.4850 0.8367 0.0735 25 1 -0.3934 -4.4883 0.9545 26 1 1.7269 -5.6759 1.6951 27 1 3.3033 -6.5060 -0.7834 28 1 3.8209 -5.3018 0.4209 29 1 3.7608 -7.0409 2.1868 30 1 4.8594 -7.5085 0.8670 31 1 3.4192 -9.4110 1.5420 32 1 3.0685 -8.9060 -0.1282 33 1 1.4923 -8.0752 2.3502 34 1 0.9746 -9.2797 1.1460 35 1 -0.0639 -7.0726 0.6995 36 1 1.0347 -7.5400 -0.6207 37 1 -0.8190 -2.2156 -0.1583 38 1 0.6140 -3.8654 -2.4078 39 1 -1.2085 -3.7080 -2.1720 40 1 -1.0301 -1.1949 -2.4708 41 1 0.7923 -1.3515 -2.7062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408417277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:08 Heat of formation + Delta-G solvation = -64.064298 kcal Electronic energy + Delta-G solvation = -21984.189516 eV Core-core repulsion = 18864.707800 eV Total energy + Delta-G solvation = -3119.481716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.65847 -37.84976 -35.92443 -35.58174 -32.98022 -31.15376 -30.79878 -30.36579 -26.51876 -24.50923 -22.26074 -21.99881 -21.23795 -20.82207 -19.53482 -19.09945 -17.02322 -16.46862 -15.33842 -15.14586 -14.93509 -14.48399 -14.25560 -14.02226 -13.82548 -13.56660 -13.36998 -12.50853 -12.43589 -12.20302 -11.83186 -11.64447 -11.49568 -11.22159 -11.07294 -10.85893 -10.73931 -10.51029 -10.46237 -10.34919 -10.28255 -10.05347 -9.81005 -9.72129 -9.53607 -9.05050 -8.72836 -7.94301 -7.70605 -6.26523 -3.82574 3.17475 3.24301 3.27880 3.80849 4.10591 4.63035 4.91271 4.96659 5.00969 5.08198 5.10312 5.17950 5.44760 5.51178 5.62013 5.66115 5.81049 5.82890 5.89344 5.92651 5.97473 6.08965 6.19345 6.22706 6.25277 6.38313 6.41136 6.45205 6.50953 6.53168 6.63827 6.84399 6.86530 7.05990 7.09480 7.40583 7.58859 7.97115 8.16795 8.52748 9.20388 9.46249 10.00115 10.74342 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029199 B = 0.005917 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.703334 B = 4730.966323 C = 5356.011012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.039 3.961 3 Si 0.923 3.077 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.313 4.313 8 H 0.099 0.901 9 N -0.410 5.410 10 C 0.411 3.589 11 O -0.585 6.585 12 C 0.108 3.892 13 H 0.102 0.898 14 O -0.544 6.544 15 C -0.094 4.094 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.109 4.109 21 C 0.161 3.839 22 C -0.195 4.195 23 C -0.166 4.166 24 H 0.267 0.733 25 H 0.370 0.630 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -11.137 -0.675 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.166 4.166 3 Si 0.750 3.250 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.440 4.440 8 H 0.117 0.883 9 N -0.127 5.127 10 C 0.199 3.801 11 O -0.471 6.471 12 C 0.046 3.954 13 H 0.120 0.880 14 O -0.348 6.348 15 C -0.113 4.113 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.146 4.146 21 C 0.056 3.944 22 C -0.233 4.233 23 C -0.203 4.203 24 H 0.078 0.922 25 H 0.217 0.783 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.676 -11.097 -1.114 11.173 hybrid contribution 0.331 1.105 0.486 1.252 sum -0.345 -9.992 -0.628 10.018 Atomic orbital electron populations 1.69895 1.05768 1.27572 1.47433 1.25241 0.95475 0.99400 0.96449 0.86050 0.79013 0.80917 0.79031 1.20939 1.19935 1.20005 1.19618 0.94024 0.82526 1.47863 0.88321 1.43286 1.14566 1.04915 1.49980 1.20775 0.88401 0.85614 0.85321 1.90415 1.23123 1.86379 1.47218 1.21948 0.81002 0.92474 0.99980 0.88031 1.86623 1.22314 1.93039 1.32845 1.21505 0.95688 0.93999 1.00144 1.21839 0.95924 1.00477 0.98084 1.21502 0.98440 0.94955 1.00401 1.21561 0.95618 0.97589 1.00934 1.21530 0.95839 0.98256 0.99884 1.21518 0.99318 0.94249 0.99556 1.20932 0.86488 0.99062 0.87953 1.23367 1.01425 0.93261 1.05289 1.22916 1.01596 0.93638 1.02196 0.92210 0.78338 0.91174 0.93343 0.87690 0.92310 0.92628 0.92839 0.92402 0.92296 0.92624 0.91559 0.92423 0.87212 0.90607 0.89451 0.90051 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.42 10.15 55.50 0.56 -21.85 16 2 C 0.04 1.01 5.02 -17.46 -0.09 0.92 16 3 Si 0.92 20.65 29.57 -169.99 -5.03 15.62 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.31 -8.56 9.26 -14.93 -0.14 -8.70 16 8 H 0.10 2.85 7.34 -52.49 -0.39 2.46 16 9 N -0.41 -10.23 2.94 -107.73 -0.32 -10.54 16 10 C 0.41 9.60 7.15 -10.98 -0.08 9.52 16 11 O -0.59 -15.24 13.26 5.55 0.07 -15.17 16 12 C 0.11 1.96 1.82 -27.88 -0.05 1.91 16 13 H 0.10 1.83 6.53 -51.93 -0.34 1.50 16 14 O -0.54 -9.16 8.68 -35.23 -0.31 -9.46 16 15 C -0.09 -1.51 1.69 -90.62 -0.15 -1.67 16 16 C -0.13 -2.06 4.96 -26.73 -0.13 -2.19 16 17 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 18 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 19 C -0.12 -1.39 5.92 -26.70 -0.16 -1.55 16 20 C -0.11 -1.45 5.00 -26.70 -0.13 -1.59 16 21 C 0.16 3.59 2.43 -67.93 -0.16 3.42 16 22 C -0.20 -3.72 7.59 -26.69 -0.20 -3.92 16 23 C -0.17 -3.51 9.00 -26.70 -0.24 -3.75 16 24 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 25 H 0.37 5.69 9.04 45.56 0.41 6.10 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.11 2.09 5.39 -51.93 -0.28 1.81 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.87 7.54 -51.93 -0.39 0.48 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.11 2.59 7.65 -51.93 -0.40 2.20 16 38 H 0.08 1.44 6.27 -51.93 -0.33 1.11 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -28.19 313.38 -8.06 -36.25 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.91 Total: 11.34 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -1.86 Total: -10.90 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.25 Total: -32.40 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.23 Total: -24.63 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.19 -8.06 -36.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408417277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.817 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds