Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99997 * 2 1 4 4 H 1.48506 * 109.46941 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47207 * 119.99775 * 3 2 1 6 6 H 1.48502 * 109.47137 * 240.00012 * 3 2 1 7 7 C 1.38953 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99526 * 191.50147 * 7 2 1 9 9 N 1.37092 * 119.99950 * 11.49269 * 7 2 1 10 10 C 1.34783 * 119.99563 * 197.00646 * 9 7 2 11 11 O 1.21289 * 120.00312 * 2.77677 * 10 9 7 12 12 C 1.50703 * 119.99596 * 182.77511 * 10 9 7 13 13 H 1.09003 * 109.46864 * 79.64728 * 12 10 9 14 14 O 1.42903 * 109.47388 * 319.64955 * 12 10 9 15 15 C 1.52997 * 109.46976 * 199.64886 * 12 10 9 16 16 C 1.53004 * 109.47073 * 294.28885 * 15 12 10 17 17 C 1.52997 * 109.47073 * 179.97438 * 16 15 12 18 18 C 1.53000 * 109.47286 * 60.00193 * 17 16 15 19 19 C 1.52994 * 109.47244 * 300.00097 * 18 17 16 20 20 C 1.53001 * 109.46916 * 174.29120 * 15 12 10 21 21 C 1.46501 * 120.00362 * 17.00875 * 9 7 2 22 22 C 1.52997 * 117.49878 * 129.18161 * 21 9 7 23 23 C 1.52995 * 117.49513 * 60.52130 * 21 9 7 24 24 H 0.96993 * 120.00305 * 354.98112 * 1 2 3 25 25 H 0.96697 * 113.99572 * 300.00178 * 14 12 10 26 26 H 1.08996 * 109.47023 * 54.29111 * 15 12 10 27 27 H 1.08996 * 109.47380 * 300.00007 * 16 15 12 28 28 H 1.09001 * 109.46719 * 60.00371 * 16 15 12 29 29 H 1.09002 * 109.47409 * 300.00039 * 17 16 15 30 30 H 1.09001 * 109.47411 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47601 * 179.97438 * 18 17 16 32 32 H 1.09002 * 109.47023 * 59.99609 * 18 17 16 33 33 H 1.09002 * 109.47450 * 299.99800 * 19 18 17 34 34 H 1.08996 * 109.47700 * 179.97438 * 19 18 17 35 35 H 1.08996 * 109.47497 * 299.99657 * 20 15 12 36 36 H 1.09002 * 109.46953 * 60.00428 * 20 15 12 37 37 H 1.09001 * 115.54795 * 274.85444 * 21 9 7 38 38 H 1.08998 * 117.49954 * 359.97438 * 22 21 9 39 39 H 1.09000 * 117.49835 * 145.02277 * 22 21 9 40 40 H 1.09002 * 117.49528 * 214.97685 * 23 21 9 41 41 H 1.08998 * 117.50333 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1019 1.6964 -1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0726 -1.2128 0.1860 9 7 1.3440 -2.3786 -0.2376 10 6 1.9154 -3.5542 0.0914 11 8 2.9955 -3.5703 0.6429 12 6 1.2120 -4.8487 -0.2261 13 1 1.3615 -5.0950 -1.2773 14 8 -0.1857 -4.7081 0.0360 15 6 1.7845 -5.9675 0.6464 16 6 3.2456 -6.2145 0.2652 17 6 3.8184 -7.3328 1.1382 18 6 3.0109 -8.6140 0.9205 19 6 1.5499 -8.3671 1.3015 20 6 0.9769 -7.2485 0.4280 21 6 0.0127 -2.3567 -0.8485 22 6 -0.2222 -3.2571 -2.0630 23 6 -0.1144 -1.7408 -2.2433 24 1 -0.4850 0.8367 0.0735 25 1 -0.3934 -4.4883 0.9545 26 1 1.7269 -5.6759 1.6951 27 1 3.3033 -6.5060 -0.7834 28 1 3.8209 -5.3018 0.4209 29 1 3.7608 -7.0409 2.1868 30 1 4.8594 -7.5085 0.8670 31 1 3.4192 -9.4110 1.5420 32 1 3.0685 -8.9060 -0.1282 33 1 1.4923 -8.0752 2.3502 34 1 0.9746 -9.2797 1.1460 35 1 -0.0639 -7.0726 0.6995 36 1 1.0347 -7.5400 -0.6207 37 1 -0.8190 -2.2156 -0.1583 38 1 0.6140 -3.8654 -2.4078 39 1 -1.2085 -3.7080 -2.1720 40 1 -1.0301 -1.1949 -2.4708 41 1 0.7923 -1.3515 -2.7062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408417277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -80.865811 kcal Electronic energy + Delta-G solvation = -21984.918084 eV Core-core repulsion = 18864.707800 eV Total energy + Delta-G solvation = -3120.210284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27184 -39.24409 -37.72861 -36.98973 -34.86360 -32.97480 -32.14852 -31.46975 -28.16552 -26.26077 -23.51119 -23.38369 -22.98016 -22.22431 -20.94943 -20.56221 -18.87969 -18.11621 -16.98661 -16.74005 -16.52827 -16.06991 -15.81382 -15.56446 -15.13964 -14.86749 -14.74248 -14.15124 -13.97002 -13.58345 -13.29943 -13.03719 -12.97278 -12.89976 -12.66557 -12.28848 -12.19854 -12.14835 -12.00410 -11.85029 -11.66186 -11.58976 -11.24438 -11.03033 -10.83976 -10.73232 -10.51173 -9.74419 -9.61004 -8.23987 -5.89053 1.35986 1.39573 1.48298 1.98097 2.26166 2.96437 3.14301 3.30030 3.54984 3.78247 3.86432 3.91516 4.09387 4.25849 4.35564 4.43778 4.49291 4.50453 4.64667 4.66331 4.70673 4.74544 4.88688 4.93477 4.97415 5.10828 5.18949 5.26428 5.31235 5.33881 5.37070 5.46605 5.47181 5.50122 5.62576 5.65168 5.71632 6.06777 6.50552 6.74871 7.22823 7.55231 8.09798 8.73385 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029199 B = 0.005917 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.703334 B = 4730.966323 C = 5356.011012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.011 3.989 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.350 4.350 8 H 0.069 0.931 9 N -0.425 5.425 10 C 0.400 3.600 11 O -0.621 6.621 12 C 0.126 3.874 13 H 0.111 0.889 14 O -0.537 6.537 15 C -0.087 4.087 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.101 4.101 21 C 0.145 3.855 22 C -0.155 4.155 23 C -0.171 4.171 24 H 0.271 0.729 25 H 0.378 0.622 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.222 -12.812 -1.330 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.193 4.193 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.478 4.478 8 H 0.087 0.913 9 N -0.142 5.142 10 C 0.190 3.810 11 O -0.509 6.509 12 C 0.063 3.937 13 H 0.128 0.872 14 O -0.342 6.342 15 C -0.107 4.107 16 C -0.163 4.163 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.138 4.138 21 C 0.040 3.960 22 C -0.193 4.193 23 C -0.209 4.209 24 H 0.082 0.918 25 H 0.225 0.775 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.109 0.891 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.945 -12.780 -1.771 13.048 hybrid contribution 0.739 1.644 0.721 1.941 sum -1.206 -11.136 -1.051 11.250 Atomic orbital electron populations 1.69971 1.06278 1.28348 1.46655 1.25841 0.96355 1.01493 0.95570 0.85227 0.78112 0.77778 0.78608 1.19352 1.20376 1.19932 1.19514 0.93284 0.84563 1.50420 0.91340 1.43491 1.15426 1.04726 1.50582 1.21876 0.88092 0.87025 0.84008 1.90407 1.24815 1.87270 1.48377 1.21776 0.81152 0.89979 1.00762 0.87177 1.86584 1.21086 1.92849 1.33688 1.21451 0.96022 0.94800 0.98414 1.21736 0.95698 0.99650 0.99196 1.21477 0.99258 0.95219 0.99134 1.21542 0.95219 0.96585 1.01894 1.21539 0.96030 0.98489 0.99284 1.21466 0.99005 0.92903 1.00441 1.20837 0.84852 1.02065 0.88245 1.23359 1.02861 0.91828 1.01275 1.22871 1.01045 0.95674 1.01341 0.91845 0.77454 0.93066 0.92563 0.91922 0.93287 0.91925 0.90963 0.91585 0.92625 0.90303 0.90975 0.91671 0.88619 0.90280 0.86638 0.89143 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.30 10.15 21.66 0.22 -45.08 16 2 C 0.01 0.59 5.02 84.93 0.43 1.02 16 3 Si 0.98 42.85 29.57 68.60 2.03 44.88 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.35 -19.92 9.26 84.04 0.78 -19.15 16 8 H 0.07 4.21 7.34 -2.91 -0.02 4.19 16 9 N -0.42 -21.76 2.94 -613.13 -1.80 -23.56 16 10 C 0.40 19.26 7.15 87.66 0.63 19.89 16 11 O -0.62 -34.03 13.26 -3.06 -0.04 -34.07 16 12 C 0.13 4.48 1.82 29.85 0.05 4.53 16 13 H 0.11 3.80 6.53 -2.39 -0.02 3.78 16 14 O -0.54 -17.18 8.68 -148.98 -1.29 -18.47 16 15 C -0.09 -2.76 1.69 -10.79 -0.02 -2.77 16 16 C -0.13 -4.09 4.96 30.59 0.15 -3.94 16 17 C -0.11 -3.00 5.92 30.59 0.18 -2.81 16 18 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 19 C -0.12 -2.37 5.92 30.61 0.18 -2.19 16 20 C -0.10 -2.41 5.00 30.62 0.15 -2.26 16 21 C 0.14 6.43 2.43 44.99 0.11 6.54 16 22 C -0.16 -5.60 7.59 30.62 0.23 -5.37 16 23 C -0.17 -7.16 9.00 30.62 0.28 -6.89 16 24 H 0.27 13.32 8.32 -92.71 -0.77 12.55 16 25 H 0.38 11.22 9.04 -74.06 -0.67 10.55 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 2.61 5.39 -2.39 -0.01 2.60 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.67 7.54 -2.39 -0.02 1.65 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 4.51 7.65 -2.39 -0.02 4.49 16 38 H 0.08 2.83 6.27 -2.39 -0.01 2.81 16 39 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -62.69 313.38 2.79 -59.90 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.35 Total: 32.01 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.33 Total: -15.59 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -1.58 Total: -68.64 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -1.33 Total: -52.55 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.69 2.79 -59.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408417277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.966 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds