Wall clock time and date at job start Mon Mar 30 2020 01:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 119.99730 * 2 1 4 4 H 1.48490 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46949 * 300.00373 * 3 2 1 6 6 H 1.48507 * 109.47131 * 60.00000 * 3 2 1 7 7 C 1.38950 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 199.11619 * 7 2 1 9 9 N 1.37096 * 119.99739 * 19.11693 * 7 2 1 10 10 C 1.34778 * 120.00158 * 42.87942 * 9 7 2 11 11 O 1.21292 * 119.99831 * 359.71867 * 10 9 7 12 12 C 1.50692 * 119.99693 * 180.02562 * 10 9 7 13 13 H 1.09005 * 109.47814 * 54.72050 * 12 10 9 14 14 O 1.42904 * 109.47046 * 174.72457 * 12 10 9 15 15 C 1.53007 * 109.47297 * 294.71738 * 12 10 9 16 16 C 1.52993 * 109.47058 * 300.00727 * 15 12 10 17 17 C 1.53005 * 109.47318 * 179.97438 * 16 15 12 18 18 C 1.52998 * 109.47066 * 59.99702 * 17 16 15 19 19 C 1.53005 * 109.46986 * 300.00245 * 18 17 16 20 20 C 1.52998 * 109.47420 * 180.02562 * 15 12 10 21 21 C 1.46495 * 119.99708 * 222.87332 * 9 7 2 22 22 C 1.53005 * 117.50035 * 8.59037 * 21 9 7 23 23 C 1.52992 * 117.50408 * 299.92851 * 21 9 7 24 24 H 0.96996 * 120.00892 * 354.88319 * 1 2 3 25 25 H 0.96698 * 114.00382 * 59.99052 * 14 12 10 26 26 H 1.08998 * 109.46386 * 60.00254 * 15 12 10 27 27 H 1.09006 * 109.47584 * 299.99503 * 16 15 12 28 28 H 1.09000 * 109.47519 * 59.99161 * 16 15 12 29 29 H 1.08998 * 109.46480 * 299.99744 * 17 16 15 30 30 H 1.08999 * 109.47427 * 179.97438 * 17 16 15 31 31 H 1.08996 * 109.47035 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47308 * 60.00089 * 18 17 16 33 33 H 1.08998 * 109.46969 * 300.00051 * 19 18 17 34 34 H 1.09002 * 109.46902 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47022 * 300.00178 * 20 15 12 36 36 H 1.08997 * 109.46804 * 60.00116 * 20 15 12 37 37 H 1.08999 * 115.54841 * 154.25745 * 21 9 7 38 38 H 1.08998 * 117.49480 * 359.97438 * 22 21 9 39 39 H 1.08999 * 117.50042 * 145.01627 * 22 21 9 40 40 H 1.09004 * 117.50331 * 214.98045 * 23 21 9 41 41 H 1.09006 * 117.49589 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0443 -1.2288 0.3069 9 7 1.3802 -2.3580 -0.3878 10 6 0.5761 -2.3566 -1.4694 11 8 0.4046 -1.3324 -2.0962 12 6 -0.1154 -3.6257 -1.8958 13 1 -0.6856 -4.0280 -1.0584 14 8 -0.9996 -3.3444 -2.9827 15 6 0.9294 -4.6511 -2.3408 16 6 1.7296 -4.0866 -3.5162 17 6 2.7749 -5.1116 -3.9608 18 6 2.0733 -6.4005 -4.3937 19 6 1.2731 -6.9651 -3.2181 20 6 0.2273 -5.9395 -2.7743 21 6 1.5825 -3.5936 0.3729 22 6 2.3394 -3.4911 1.6986 23 6 3.0109 -4.1309 0.4809 24 1 -0.4851 0.8366 0.0749 25 1 -0.5597 -2.9827 -3.7641 26 1 1.6038 -4.8657 -1.5118 27 1 1.0553 -3.8719 -4.3453 28 1 2.2298 -3.1685 -3.2078 29 1 3.4492 -5.3258 -3.1317 30 1 3.3448 -4.7096 -4.7985 31 1 2.8180 -7.1309 -4.7100 32 1 1.3989 -6.1863 -5.2228 33 1 1.9474 -7.1793 -2.3891 34 1 0.7728 -7.8831 -3.5267 35 1 -0.3431 -6.3419 -1.9371 36 1 -0.4468 -5.7246 -3.6034 37 1 0.7742 -4.3221 0.3099 38 1 2.6872 -2.5044 2.0046 39 1 2.0293 -4.1524 2.5077 40 1 3.1424 -5.2129 0.4893 41 1 3.8002 -3.5652 -0.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408417278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:11 Heat of formation + Delta-G solvation = -69.088748 kcal Electronic energy + Delta-G solvation = -22309.676408 eV Core-core repulsion = 19189.976816 eV Total energy + Delta-G solvation = -3119.699593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68483 -37.74940 -36.37289 -35.07773 -32.70297 -31.46156 -30.58221 -30.42392 -26.67263 -24.32429 -22.50877 -21.75596 -21.71338 -20.91838 -19.41015 -19.29702 -17.04668 -16.13502 -15.85838 -15.09803 -14.83643 -14.55548 -14.06624 -14.04349 -13.78919 -13.57861 -13.26627 -12.71607 -12.30145 -12.13605 -11.96527 -11.66977 -11.44191 -11.02759 -10.98008 -10.92047 -10.87240 -10.76739 -10.58912 -10.47784 -10.26626 -10.14103 -9.90598 -9.81078 -9.73564 -9.48774 -8.67735 -7.84722 -7.01256 -6.10177 -3.85437 3.29193 3.38615 3.41095 4.06509 4.25388 4.69342 4.79743 4.88394 4.93181 4.96117 5.08773 5.26643 5.37745 5.46230 5.56930 5.57422 5.62403 5.69028 5.72703 5.77955 5.80085 5.85810 5.99929 6.15131 6.17505 6.20249 6.21306 6.33883 6.35625 6.37915 6.44377 6.53068 6.66604 6.72870 6.75661 6.93126 7.61916 8.14557 8.29573 9.05762 9.16153 9.66394 10.28035 10.98461 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.007163 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.656523 B = 3908.252793 C = 4288.524159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.352 4.352 8 H 0.078 0.922 9 N -0.423 5.423 10 C 0.459 3.541 11 O -0.527 6.527 12 C 0.097 3.903 13 H 0.100 0.900 14 O -0.546 6.546 15 C -0.115 4.115 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.109 4.109 21 C 0.075 3.925 22 C -0.177 4.177 23 C -0.206 4.206 24 H 0.264 0.736 25 H 0.373 0.627 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 -12.699 -3.492 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.478 4.478 8 H 0.096 0.904 9 N -0.145 5.145 10 C 0.246 3.754 11 O -0.404 6.404 12 C 0.034 3.966 13 H 0.118 0.882 14 O -0.351 6.351 15 C -0.134 4.134 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.032 4.032 22 C -0.215 4.215 23 C -0.245 4.245 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.080 -12.244 -3.496 13.100 hybrid contribution 0.765 0.987 -0.088 1.252 sum 3.845 -11.257 -3.583 12.423 Atomic orbital electron populations 1.69843 1.06557 1.27349 1.42402 1.25227 0.94765 0.99356 0.94417 0.86186 0.79778 0.82789 0.77505 1.19617 1.20682 1.21198 1.18886 0.94917 0.84032 1.50009 0.90443 1.42815 1.43668 1.06107 1.21865 1.20478 0.83381 0.89670 0.81884 1.90538 1.62033 1.33321 1.54540 1.21840 0.91299 0.93496 0.89965 0.88211 1.86462 1.36909 1.85897 1.25786 1.21893 0.97322 0.94814 0.99407 1.21533 0.97564 0.98758 0.97512 1.21482 0.97823 0.95256 1.00654 1.21534 0.98916 0.97065 0.98042 1.21538 0.97937 0.97873 0.98157 1.21519 0.97461 0.94493 1.01217 1.21721 0.93094 0.91409 0.96958 1.23119 1.04606 1.02673 0.91061 1.23310 0.98358 0.99026 1.03768 0.92611 0.77910 0.89091 0.92357 0.91014 0.92019 0.92414 0.92639 0.92235 0.92178 0.92519 0.92334 0.91473 0.88007 0.87463 0.89855 0.89849 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.88 11.66 55.50 0.65 -24.23 16 2 C 0.07 2.07 4.35 -17.47 -0.08 1.99 16 3 Si 0.91 22.00 29.60 -169.99 -5.03 16.97 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.35 -9.49 7.80 -14.93 -0.12 -9.61 16 8 H 0.08 2.03 7.44 -52.49 -0.39 1.64 16 9 N -0.42 -10.31 2.86 -107.74 -0.31 -10.62 16 10 C 0.46 11.42 5.12 -10.99 -0.06 11.37 16 11 O -0.53 -15.45 13.96 -14.31 -0.20 -15.65 16 12 C 0.10 1.92 2.38 -27.88 -0.07 1.85 16 13 H 0.10 1.95 7.29 -51.93 -0.38 1.57 16 14 O -0.55 -10.96 12.28 -55.09 -0.68 -11.63 16 15 C -0.12 -1.80 1.80 -90.62 -0.16 -1.97 16 16 C -0.12 -1.81 4.65 -26.73 -0.12 -1.93 16 17 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 18 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 19 C -0.12 -1.31 5.93 -26.71 -0.16 -1.47 16 20 C -0.11 -1.44 5.06 -26.71 -0.14 -1.57 16 21 C 0.07 1.45 4.40 -67.93 -0.30 1.15 16 22 C -0.18 -3.13 9.81 -26.69 -0.26 -3.40 16 23 C -0.21 -3.38 9.54 -26.70 -0.25 -3.64 16 24 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 25 H 0.37 6.87 7.08 45.56 0.32 7.19 16 26 H 0.09 1.43 5.09 -51.93 -0.26 1.17 16 27 H 0.06 0.88 6.78 -51.93 -0.35 0.52 16 28 H 0.07 1.35 7.22 -51.93 -0.37 0.98 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 37 H 0.10 1.79 6.28 -51.93 -0.33 1.46 16 38 H 0.11 2.13 6.86 -51.93 -0.36 1.77 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -32.30 315.82 -8.72 -41.02 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.88 Total: 9.69 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.03 Total: -10.31 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.34 Total: -34.85 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.88 Total: -27.28 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.30 -8.72 -41.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408417278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.066 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds