Wall clock time and date at job start Mon Mar 30 2020 01:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 119.99730 * 2 1 4 4 H 1.48490 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46949 * 300.00373 * 3 2 1 6 6 H 1.48507 * 109.47131 * 60.00000 * 3 2 1 7 7 C 1.38950 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 199.11619 * 7 2 1 9 9 N 1.37096 * 119.99739 * 19.11693 * 7 2 1 10 10 C 1.34778 * 120.00158 * 42.87942 * 9 7 2 11 11 O 1.21292 * 119.99831 * 359.71867 * 10 9 7 12 12 C 1.50692 * 119.99693 * 180.02562 * 10 9 7 13 13 H 1.09005 * 109.47814 * 54.72050 * 12 10 9 14 14 O 1.42904 * 109.47046 * 174.72457 * 12 10 9 15 15 C 1.53007 * 109.47297 * 294.71738 * 12 10 9 16 16 C 1.52993 * 109.47058 * 300.00727 * 15 12 10 17 17 C 1.53005 * 109.47318 * 179.97438 * 16 15 12 18 18 C 1.52998 * 109.47066 * 59.99702 * 17 16 15 19 19 C 1.53005 * 109.46986 * 300.00245 * 18 17 16 20 20 C 1.52998 * 109.47420 * 180.02562 * 15 12 10 21 21 C 1.46495 * 119.99708 * 222.87332 * 9 7 2 22 22 C 1.53005 * 117.50035 * 8.59037 * 21 9 7 23 23 C 1.52992 * 117.50408 * 299.92851 * 21 9 7 24 24 H 0.96996 * 120.00892 * 354.88319 * 1 2 3 25 25 H 0.96698 * 114.00382 * 59.99052 * 14 12 10 26 26 H 1.08998 * 109.46386 * 60.00254 * 15 12 10 27 27 H 1.09006 * 109.47584 * 299.99503 * 16 15 12 28 28 H 1.09000 * 109.47519 * 59.99161 * 16 15 12 29 29 H 1.08998 * 109.46480 * 299.99744 * 17 16 15 30 30 H 1.08999 * 109.47427 * 179.97438 * 17 16 15 31 31 H 1.08996 * 109.47035 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47308 * 60.00089 * 18 17 16 33 33 H 1.08998 * 109.46969 * 300.00051 * 19 18 17 34 34 H 1.09002 * 109.46902 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47022 * 300.00178 * 20 15 12 36 36 H 1.08997 * 109.46804 * 60.00116 * 20 15 12 37 37 H 1.08999 * 115.54841 * 154.25745 * 21 9 7 38 38 H 1.08998 * 117.49480 * 359.97438 * 22 21 9 39 39 H 1.08999 * 117.50042 * 145.01627 * 22 21 9 40 40 H 1.09004 * 117.50331 * 214.98045 * 23 21 9 41 41 H 1.09006 * 117.49589 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0443 -1.2288 0.3069 9 7 1.3802 -2.3580 -0.3878 10 6 0.5761 -2.3566 -1.4694 11 8 0.4046 -1.3324 -2.0962 12 6 -0.1154 -3.6257 -1.8958 13 1 -0.6856 -4.0280 -1.0584 14 8 -0.9996 -3.3444 -2.9827 15 6 0.9294 -4.6511 -2.3408 16 6 1.7296 -4.0866 -3.5162 17 6 2.7749 -5.1116 -3.9608 18 6 2.0733 -6.4005 -4.3937 19 6 1.2731 -6.9651 -3.2181 20 6 0.2273 -5.9395 -2.7743 21 6 1.5825 -3.5936 0.3729 22 6 2.3394 -3.4911 1.6986 23 6 3.0109 -4.1309 0.4809 24 1 -0.4851 0.8366 0.0749 25 1 -0.5597 -2.9827 -3.7641 26 1 1.6038 -4.8657 -1.5118 27 1 1.0553 -3.8719 -4.3453 28 1 2.2298 -3.1685 -3.2078 29 1 3.4492 -5.3258 -3.1317 30 1 3.3448 -4.7096 -4.7985 31 1 2.8180 -7.1309 -4.7100 32 1 1.3989 -6.1863 -5.2228 33 1 1.9474 -7.1793 -2.3891 34 1 0.7728 -7.8831 -3.5267 35 1 -0.3431 -6.3419 -1.9371 36 1 -0.4468 -5.7246 -3.6034 37 1 0.7742 -4.3221 0.3099 38 1 2.6872 -2.5044 2.0046 39 1 2.0293 -4.1524 2.5077 40 1 3.1424 -5.2129 0.4893 41 1 3.8002 -3.5652 -0.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408417278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:10 Heat of formation + Delta-G solvation = -89.692386 kcal Electronic energy + Delta-G solvation = -22310.569849 eV Core-core repulsion = 19189.976816 eV Total energy + Delta-G solvation = -3120.593033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25331 -39.18248 -37.96165 -36.67233 -34.69519 -33.12466 -32.01776 -31.56986 -28.32054 -26.15210 -23.66935 -23.12191 -23.09322 -22.29539 -21.21747 -20.41713 -18.83666 -17.92989 -17.30750 -16.83199 -16.56530 -15.95013 -15.58829 -15.42689 -15.07039 -14.85189 -14.77882 -14.35100 -13.83871 -13.62711 -13.16734 -13.12106 -12.98912 -12.82158 -12.71154 -12.47431 -12.23044 -12.16860 -12.04592 -11.89809 -11.81994 -11.55767 -11.27138 -11.16259 -10.99699 -10.81155 -10.65106 -9.73472 -8.96038 -8.21656 -5.98724 1.32599 1.40320 1.48023 2.21372 2.37136 3.03102 3.11791 3.31635 3.49089 3.74358 3.83223 3.87231 4.08303 4.15376 4.24386 4.28491 4.42097 4.46928 4.52039 4.58021 4.67650 4.71731 4.80952 4.84790 4.90620 5.04043 5.08431 5.21664 5.28070 5.29738 5.35510 5.36829 5.44646 5.46983 5.49671 5.51426 5.66864 6.17240 6.61218 7.02273 7.20363 7.69221 8.34320 8.86912 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.007163 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.656523 B = 3908.252793 C = 4288.524159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.020 3.980 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.355 4.355 8 H 0.079 0.921 9 N -0.436 5.436 10 C 0.447 3.553 11 O -0.586 6.586 12 C 0.105 3.895 13 H 0.104 0.896 14 O -0.554 6.554 15 C -0.101 4.101 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.105 4.105 21 C 0.043 3.957 22 C -0.176 4.176 23 C -0.173 4.173 24 H 0.258 0.742 25 H 0.377 0.623 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.112 -15.758 -3.243 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.186 4.186 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.097 0.903 9 N -0.157 5.157 10 C 0.235 3.765 11 O -0.467 6.467 12 C 0.042 3.958 13 H 0.122 0.878 14 O -0.360 6.360 15 C -0.120 4.120 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.142 4.142 21 C -0.062 4.062 22 C -0.213 4.213 23 C -0.212 4.212 24 H 0.067 0.933 25 H 0.226 0.774 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.098 0.902 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.416 -15.344 -3.210 16.286 hybrid contribution 0.400 1.894 -0.163 1.943 sum 4.815 -13.450 -3.373 14.679 Atomic orbital electron populations 1.69961 1.08125 1.27485 1.45133 1.26049 0.95412 1.02666 0.94502 0.85294 0.79362 0.79019 0.77042 1.17990 1.22385 1.19848 1.19139 0.95160 0.85388 1.48560 0.90289 1.42994 1.43217 1.07152 1.22309 1.21418 0.82995 0.90696 0.81342 1.90485 1.64116 1.35808 1.56317 1.21841 0.91906 0.91965 0.90038 0.87828 1.86424 1.37543 1.85930 1.26081 1.21787 0.96130 0.94701 0.99387 1.21482 0.98144 0.97985 0.97525 1.21458 0.97024 0.95355 1.00911 1.21528 0.99311 0.96301 0.98093 1.21531 0.97429 0.97716 0.98366 1.21498 0.97915 0.93471 1.01362 1.22020 0.95762 0.90139 0.98231 1.23179 1.04075 1.02334 0.91751 1.23313 0.95268 1.01118 1.01476 0.93289 0.77358 0.88674 0.92497 0.95266 0.91751 0.91971 0.90513 0.92247 0.91288 0.90510 0.91372 0.92169 0.85907 0.90225 0.86465 0.85536 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.54 11.66 21.66 0.25 -54.29 16 2 C 0.02 1.15 4.35 84.93 0.37 1.52 16 3 Si 0.97 46.53 29.60 68.60 2.03 48.56 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.35 -19.60 7.80 84.04 0.66 -18.94 16 8 H 0.08 4.21 7.44 -2.91 -0.02 4.19 16 9 N -0.44 -21.58 2.86 -613.15 -1.75 -23.33 16 10 C 0.45 22.91 5.12 87.65 0.45 23.36 16 11 O -0.59 -36.06 13.96 15.92 0.22 -35.83 16 12 C 0.11 4.16 2.38 29.85 0.07 4.23 16 13 H 0.10 3.99 7.29 -2.38 -0.02 3.97 16 14 O -0.55 -22.59 12.28 -129.99 -1.60 -24.19 16 15 C -0.10 -3.01 1.80 -10.79 -0.02 -3.03 16 16 C -0.11 -3.50 4.65 30.59 0.14 -3.36 16 17 C -0.11 -2.57 5.92 30.60 0.18 -2.38 16 18 C -0.11 -2.13 5.92 30.60 0.18 -1.95 16 19 C -0.11 -2.04 5.93 30.61 0.18 -1.86 16 20 C -0.10 -2.45 5.06 30.61 0.15 -2.30 16 21 C 0.04 1.62 4.40 44.99 0.20 1.82 16 22 C -0.18 -5.86 9.81 30.62 0.30 -5.56 16 23 C -0.17 -5.18 9.54 30.62 0.29 -4.89 16 24 H 0.26 15.59 8.32 -92.71 -0.77 14.82 16 25 H 0.38 14.43 7.08 -74.06 -0.52 13.91 16 26 H 0.10 2.76 5.09 -2.39 -0.01 2.75 16 27 H 0.06 1.72 6.78 -2.38 -0.02 1.71 16 28 H 0.03 1.13 7.22 -2.39 -0.02 1.11 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 37 H 0.12 4.03 6.28 -2.39 -0.01 4.01 16 38 H 0.08 3.12 6.86 -2.39 -0.02 3.11 16 39 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -73.78 315.82 2.81 -70.97 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.50 Total: 31.46 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 3.16 Total: -13.35 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -1.50 Total: -77.62 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -1.37 Total: -60.02 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.78 2.81 -70.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408417278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.725 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds