Wall clock time and date at job start Mon Mar 30 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46947 * 2 1 4 4 C 1.46906 * 111.00125 * 295.57745 * 3 2 1 5 5 C 1.52995 * 109.47301 * 296.73959 * 4 3 2 6 6 C 1.50699 * 109.47540 * 185.23753 * 5 4 3 7 7 C 1.33384 * 125.20151 * 89.99368 * 6 5 4 8 8 C 1.38424 * 114.92079 * 179.97438 * 7 6 5 9 9 C 1.33387 * 114.92042 * 0.02562 * 8 7 6 10 10 S 1.75874 * 125.20309 * 269.69555 * 6 5 4 11 11 C 1.46898 * 111.00199 * 59.53218 * 3 2 1 12 12 H 1.09002 * 109.47135 * 295.58356 * 11 3 2 13 13 C 1.53001 * 109.47319 * 175.58110 * 11 3 2 14 14 C 1.52995 * 109.47052 * 55.58156 * 11 3 2 15 15 C 1.50704 * 109.47407 * 184.87299 * 14 11 3 16 16 H 1.08003 * 119.99382 * 355.65367 * 15 14 11 17 17 C 1.37879 * 120.00374 * 175.65338 * 15 14 11 18 18 N 1.31510 * 119.99795 * 359.72432 * 17 15 14 19 19 Si 1.86796 * 120.00033 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47336 * 179.72476 * 19 17 15 21 21 H 1.48501 * 109.47235 * 299.72479 * 19 17 15 22 22 H 1.48506 * 109.47224 * 59.72255 * 19 17 15 23 23 H 1.09002 * 109.47090 * 61.66026 * 1 2 3 24 24 H 1.09004 * 109.47084 * 181.65454 * 1 2 3 25 25 H 1.09000 * 109.47405 * 301.65834 * 1 2 3 26 26 H 1.09002 * 109.46669 * 239.99985 * 2 1 3 27 27 H 1.09000 * 109.47057 * 120.00037 * 2 1 3 28 28 H 1.09003 * 109.46931 * 56.73757 * 4 3 2 29 29 H 1.08994 * 109.47233 * 176.73217 * 4 3 2 30 30 H 1.09009 * 109.46746 * 305.23889 * 5 4 3 31 31 H 1.08997 * 109.47211 * 65.23455 * 5 4 3 32 32 H 1.08008 * 122.54402 * 359.96280 * 7 6 5 33 33 H 1.08001 * 122.54217 * 180.02562 * 8 7 6 34 34 H 1.08004 * 125.20620 * 180.02562 * 9 8 7 35 35 H 1.08993 * 109.47353 * 299.99968 * 13 11 3 36 36 H 1.09000 * 109.46991 * 60.00270 * 13 11 3 37 37 H 1.08999 * 109.47072 * 179.97438 * 13 11 3 38 38 H 1.08998 * 109.47322 * 64.87394 * 14 11 3 39 39 H 1.09007 * 109.47322 * 304.86894 * 14 11 3 40 40 H 0.97001 * 120.00199 * 0.27019 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6369 2.0787 -1.2371 5 6 2.3029 1.3945 -2.4325 6 6 2.0154 2.1806 -3.6857 7 6 2.7698 3.1726 -4.1611 8 6 2.3060 3.7488 -5.3311 9 6 1.1747 3.2251 -5.8055 10 16 0.6379 1.9255 -4.7489 11 6 1.5395 2.1131 1.1820 12 1 0.4534 2.1958 1.1415 13 6 2.1571 3.5128 1.2045 14 6 1.9464 1.3558 2.4476 15 6 1.3527 2.0371 3.6536 16 1 0.8048 2.9605 3.5368 17 6 1.5088 1.4817 4.9058 18 7 2.1713 0.3545 5.0472 19 14 0.7735 2.3267 6.4007 20 1 1.0742 1.5303 7.6174 21 1 1.3594 3.6841 6.5402 22 1 -0.6979 2.4376 6.2328 23 1 -0.3633 0.4878 -0.9045 24 1 -0.3633 -1.0273 0.0297 25 1 -0.3634 0.5394 0.8747 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.5538 2.0415 -1.3542 29 1 1.9613 3.1180 -1.1861 30 1 3.3800 1.3489 -2.2713 31 1 1.9084 0.3840 -2.5390 32 1 3.6739 3.5015 -3.6703 33 1 2.8210 4.5609 -5.8227 34 1 0.6685 3.5464 -6.7039 35 1 3.2431 3.4301 1.2451 36 1 1.8671 4.0523 0.3029 37 1 1.8004 4.0532 2.0814 38 1 3.0330 1.3481 2.5329 39 1 1.5791 0.3310 2.3918 40 1 2.5534 -0.0842 4.2710 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411212863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:01 Heat of formation + Delta-G solvation = 21.035439 kcal Electronic energy + Delta-G solvation = -18317.128365 eV Core-core repulsion = 15644.089721 eV Total energy + Delta-G solvation = -2673.038644 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.76907 -37.75042 -34.01987 -32.53753 -31.42703 -29.18618 -26.96648 -26.51757 -24.28432 -23.07312 -22.90273 -21.02490 -19.30734 -18.56423 -17.23658 -16.78260 -15.68618 -15.58618 -14.96322 -14.23799 -14.13102 -13.68346 -13.27429 -13.04058 -12.80176 -12.53674 -12.47769 -12.11665 -12.07407 -11.72879 -11.53710 -11.42832 -11.19627 -10.98055 -10.84022 -10.76101 -10.66920 -10.29418 -10.08477 -9.86127 -9.35349 -8.72621 -8.59695 -8.51481 -8.27816 -7.71576 -6.32026 -4.00282 0.89423 1.52800 1.90129 2.64364 3.45208 3.46945 3.65560 4.31267 4.58898 4.87332 4.95320 5.06649 5.28907 5.39211 5.44767 5.46192 5.51778 5.62802 5.68185 5.81350 5.83310 5.97415 6.02486 6.08481 6.11951 6.23458 6.23993 6.28012 6.39819 6.45862 6.60048 6.70773 6.84912 7.03681 7.33218 7.48721 7.71173 7.77914 8.28955 8.50195 8.92888 9.70928 11.08581 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037915 B = 0.003780 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.322194 B = 7405.140494 C = 7675.038766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.054 3.946 5 C -0.049 4.049 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.130 4.130 9 C -0.223 4.223 10 S 0.087 5.913 11 C 0.091 3.909 12 H 0.033 0.967 13 C -0.131 4.131 14 C 0.018 3.982 15 C -0.597 4.597 16 H 0.048 0.952 17 C 0.015 3.985 18 N -0.914 5.914 19 Si 1.066 2.934 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.289 1.289 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.066 0.934 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 3.629 -20.051 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.074 4.074 5 C -0.088 4.088 6 C -0.274 4.274 7 C -0.177 4.177 8 C -0.161 4.161 9 C -0.359 4.359 10 S 0.350 5.650 11 C -0.016 4.016 12 H 0.051 0.949 13 C -0.189 4.189 14 C -0.019 4.019 15 C -0.636 4.636 16 H 0.066 0.934 17 C -0.188 4.188 18 N -0.550 5.550 19 Si 0.895 3.105 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.216 1.216 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.030 0.970 39 H 0.032 0.968 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.333 2.518 -18.398 18.715 hybrid contribution 0.364 1.211 -1.863 2.252 sum -1.969 3.729 -20.260 20.695 Atomic orbital electron populations 1.22396 0.98740 1.01852 1.01983 1.22194 0.92756 0.90897 1.02337 1.62354 1.59585 1.02061 1.01742 1.22137 0.97354 0.98766 0.89165 1.20232 1.02710 0.97320 0.88549 1.24591 0.98677 1.02604 1.01551 1.20169 1.02288 0.97797 0.97397 1.20176 0.96754 1.02050 0.97114 1.25557 1.02111 1.02975 1.05242 1.84327 1.27225 1.34975 1.18475 1.21683 0.96180 0.93867 0.89884 0.94906 1.21780 1.01070 0.95936 1.00100 1.19314 0.96522 0.95174 0.90873 1.22018 1.37830 1.10564 0.93194 0.93365 1.25774 0.95956 0.96177 1.00934 1.70771 1.33484 1.16598 1.34160 0.83580 0.75828 0.75322 0.75777 1.20833 1.21481 1.21587 0.93401 0.92719 0.91409 0.91781 0.89756 0.94972 0.90382 0.89053 0.90905 0.84182 0.84485 0.82193 0.92801 0.94816 0.91552 0.96990 0.96826 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 9.23 37.16 0.34 -2.73 16 2 C 0.05 0.77 5.35 -3.82 -0.02 0.75 16 3 N -0.53 -9.43 4.60 -226.65 -1.04 -10.48 16 4 C 0.05 0.81 4.51 -3.82 -0.02 0.79 16 5 C -0.05 -0.61 5.42 -27.89 -0.15 -0.76 16 6 C -0.16 -1.86 5.76 -36.00 -0.21 -2.06 16 7 C -0.15 -1.62 10.05 -41.21 -0.41 -2.04 16 8 C -0.13 -1.28 10.18 -41.21 -0.42 -1.70 16 9 C -0.22 -2.15 11.23 29.04 0.33 -1.83 16 10 S 0.09 0.95 23.33 -107.50 -2.51 -1.56 16 11 C 0.09 1.89 1.56 -67.72 -0.11 1.78 16 12 H 0.03 0.72 6.51 -51.93 -0.34 0.38 16 13 C -0.13 -2.55 8.80 37.16 0.33 -2.23 16 14 C 0.02 0.47 3.58 -27.88 -0.10 0.37 16 15 C -0.60 -16.74 8.48 -34.44 -0.29 -17.03 16 16 H 0.05 1.33 6.89 -52.48 -0.36 0.97 16 17 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 18 N -0.91 -27.96 13.65 55.43 0.76 -27.21 16 19 Si 1.07 25.35 29.90 -169.99 -5.08 20.26 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H 0.05 0.70 6.52 -51.93 -0.34 0.37 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.27 6.41 -51.93 -0.33 0.93 16 26 H 0.06 0.92 6.29 -51.93 -0.33 0.60 16 27 H 0.08 1.60 6.15 -51.93 -0.32 1.28 16 28 H 0.03 0.49 6.30 -51.93 -0.33 0.17 16 29 H 0.08 1.18 5.96 -51.93 -0.31 0.87 16 30 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 31 H 0.07 0.89 6.65 -51.93 -0.35 0.55 16 32 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.56 6.26 -51.93 -0.33 0.24 16 37 H 0.07 1.37 6.85 -51.93 -0.36 1.01 16 38 H 0.01 0.32 8.13 -51.93 -0.42 -0.10 16 39 H 0.01 0.36 5.77 -51.93 -0.30 0.06 16 40 H 0.27 8.21 7.20 -40.82 -0.29 7.92 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -29.94 322.90 -9.87 -39.80 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.03 Total: 0.65 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -0.83 Total: -26.34 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.29 Total: -37.68 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.94 -9.87 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411212863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.839 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds