Wall clock time and date at job start Mon Mar 30 2020 00:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.46947 * 2 1 4 4 C 1.46906 * 111.00125 * 295.57745 * 3 2 1 5 5 C 1.52995 * 109.47301 * 296.73959 * 4 3 2 6 6 C 1.50699 * 109.47540 * 185.23753 * 5 4 3 7 7 C 1.33384 * 125.20151 * 89.99368 * 6 5 4 8 8 C 1.38424 * 114.92079 * 179.97438 * 7 6 5 9 9 C 1.33387 * 114.92042 * 0.02562 * 8 7 6 10 10 S 1.75874 * 125.20309 * 269.69555 * 6 5 4 11 11 C 1.46898 * 111.00199 * 59.53218 * 3 2 1 12 12 H 1.09002 * 109.47135 * 295.58356 * 11 3 2 13 13 C 1.53001 * 109.47319 * 175.58110 * 11 3 2 14 14 C 1.52995 * 109.47052 * 55.58156 * 11 3 2 15 15 C 1.50704 * 109.47407 * 184.87299 * 14 11 3 16 16 H 1.08003 * 119.99382 * 355.65367 * 15 14 11 17 17 C 1.37879 * 120.00374 * 175.65338 * 15 14 11 18 18 N 1.31510 * 119.99795 * 359.72432 * 17 15 14 19 19 Si 1.86796 * 120.00033 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47336 * 179.72476 * 19 17 15 21 21 H 1.48501 * 109.47235 * 299.72479 * 19 17 15 22 22 H 1.48506 * 109.47224 * 59.72255 * 19 17 15 23 23 H 1.09002 * 109.47090 * 61.66026 * 1 2 3 24 24 H 1.09004 * 109.47084 * 181.65454 * 1 2 3 25 25 H 1.09000 * 109.47405 * 301.65834 * 1 2 3 26 26 H 1.09002 * 109.46669 * 239.99985 * 2 1 3 27 27 H 1.09000 * 109.47057 * 120.00037 * 2 1 3 28 28 H 1.09003 * 109.46931 * 56.73757 * 4 3 2 29 29 H 1.08994 * 109.47233 * 176.73217 * 4 3 2 30 30 H 1.09009 * 109.46746 * 305.23889 * 5 4 3 31 31 H 1.08997 * 109.47211 * 65.23455 * 5 4 3 32 32 H 1.08008 * 122.54402 * 359.96280 * 7 6 5 33 33 H 1.08001 * 122.54217 * 180.02562 * 8 7 6 34 34 H 1.08004 * 125.20620 * 180.02562 * 9 8 7 35 35 H 1.08993 * 109.47353 * 299.99968 * 13 11 3 36 36 H 1.09000 * 109.46991 * 60.00270 * 13 11 3 37 37 H 1.08999 * 109.47072 * 179.97438 * 13 11 3 38 38 H 1.08998 * 109.47322 * 64.87394 * 14 11 3 39 39 H 1.09007 * 109.47322 * 304.86894 * 14 11 3 40 40 H 0.97001 * 120.00199 * 0.27019 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6369 2.0787 -1.2371 5 6 2.3029 1.3945 -2.4325 6 6 2.0154 2.1806 -3.6857 7 6 2.7698 3.1726 -4.1611 8 6 2.3060 3.7488 -5.3311 9 6 1.1747 3.2251 -5.8055 10 16 0.6379 1.9255 -4.7489 11 6 1.5395 2.1131 1.1820 12 1 0.4534 2.1958 1.1415 13 6 2.1571 3.5128 1.2045 14 6 1.9464 1.3558 2.4476 15 6 1.3527 2.0371 3.6536 16 1 0.8048 2.9605 3.5368 17 6 1.5088 1.4817 4.9058 18 7 2.1713 0.3545 5.0472 19 14 0.7735 2.3267 6.4007 20 1 1.0742 1.5303 7.6174 21 1 1.3594 3.6841 6.5402 22 1 -0.6979 2.4376 6.2328 23 1 -0.3633 0.4878 -0.9045 24 1 -0.3633 -1.0273 0.0297 25 1 -0.3634 0.5394 0.8747 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.5538 2.0415 -1.3542 29 1 1.9613 3.1180 -1.1861 30 1 3.3800 1.3489 -2.2713 31 1 1.9084 0.3840 -2.5390 32 1 3.6739 3.5015 -3.6703 33 1 2.8210 4.5609 -5.8227 34 1 0.6685 3.5464 -6.7039 35 1 3.2431 3.4301 1.2451 36 1 1.8671 4.0523 0.3029 37 1 1.8004 4.0532 2.0814 38 1 3.0330 1.3481 2.5329 39 1 1.5791 0.3310 2.3918 40 1 2.5534 -0.0842 4.2710 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411212863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:00 Heat of formation + Delta-G solvation = 4.341190 kcal Electronic energy + Delta-G solvation = -18317.852282 eV Core-core repulsion = 15644.089721 eV Total energy + Delta-G solvation = -2673.762561 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13580 -38.67454 -35.85324 -33.95405 -33.00086 -30.51866 -28.34939 -28.08580 -25.71472 -24.75704 -24.05520 -22.42914 -20.15057 -20.09216 -18.90633 -18.12397 -17.05397 -16.63779 -16.21254 -15.79505 -15.57935 -15.49083 -14.36919 -14.35006 -13.99099 -13.87348 -13.63161 -13.56199 -13.29873 -13.18785 -13.10215 -12.80598 -12.63698 -12.57704 -12.39357 -12.12391 -11.97398 -11.88237 -11.64825 -11.32559 -11.12521 -10.65943 -10.48711 -9.55749 -9.39756 -9.16719 -8.63965 -6.32896 0.09129 0.72774 1.11764 1.52572 1.60935 1.79775 1.86017 2.57429 2.99194 3.20397 3.88986 3.92414 4.12577 4.14061 4.22292 4.27902 4.30884 4.44451 4.44504 4.52448 4.62543 4.66947 4.71481 4.82822 4.90256 4.96753 5.05445 5.11295 5.14362 5.18924 5.26426 5.32649 5.37319 5.42768 5.55964 5.61708 5.94618 6.22793 6.25555 6.28884 6.64337 7.47750 8.76749 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037915 B = 0.003780 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.322194 B = 7405.140494 C = 7675.038766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.046 3.954 3 N -0.539 5.539 4 C 0.060 3.940 5 C -0.038 4.038 6 C -0.179 4.179 7 C -0.147 4.147 8 C -0.140 4.140 9 C -0.216 4.216 10 S 0.074 5.926 11 C 0.101 3.899 12 H 0.023 0.977 13 C -0.124 4.124 14 C 0.026 3.974 15 C -0.607 4.607 16 H 0.051 0.949 17 C -0.039 4.039 18 N -0.940 5.940 19 Si 1.114 2.886 20 H -0.285 1.285 21 H -0.269 1.269 22 H -0.271 1.271 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.050 0.950 38 H -0.016 1.016 39 H -0.003 1.003 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 5.002 -21.829 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.082 4.082 3 N -0.262 5.262 4 C -0.068 4.068 5 C -0.077 4.077 6 C -0.296 4.296 7 C -0.177 4.177 8 C -0.170 4.170 9 C -0.351 4.351 10 S 0.337 5.663 11 C -0.007 4.007 12 H 0.041 0.959 13 C -0.182 4.182 14 C -0.011 4.011 15 C -0.646 4.646 16 H 0.069 0.931 17 C -0.236 4.236 18 N -0.578 5.578 19 Si 0.936 3.064 20 H -0.211 1.211 21 H -0.194 1.194 22 H -0.196 1.196 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.202 0.798 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.002 0.998 39 H 0.015 0.985 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.964 3.895 -20.212 20.796 hybrid contribution 0.578 0.783 -1.425 1.726 sum -2.386 4.678 -21.637 22.265 Atomic orbital electron populations 1.22298 0.98030 1.02534 1.01227 1.22190 0.93323 0.90419 1.02224 1.62286 1.59701 1.02390 1.01855 1.22147 0.97496 0.98671 0.88472 1.20051 1.02336 0.97343 0.87980 1.24504 0.99773 1.03536 1.01833 1.20430 1.02285 0.97255 0.97713 1.20442 0.97026 1.02722 0.96851 1.25917 1.01894 1.01801 1.05500 1.84355 1.27082 1.35939 1.18908 1.21381 0.95585 0.94304 0.89390 0.95881 1.21691 1.00497 0.95093 1.00908 1.19157 0.94307 0.94796 0.92818 1.22415 1.37282 1.10599 0.94275 0.93099 1.27324 0.95672 0.96044 1.04564 1.70906 1.35338 1.17996 1.33511 0.82970 0.76217 0.75075 0.72150 1.21075 1.19398 1.19597 0.91692 0.91234 0.94564 0.88894 0.92788 0.95103 0.90411 0.89148 0.90597 0.83495 0.82194 0.79752 0.93312 0.91745 0.93087 0.99788 0.98532 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 9.23 71.98 0.66 -5.12 16 2 C 0.05 1.55 5.35 86.31 0.46 2.01 16 3 N -0.54 -18.92 4.60 -870.99 -4.01 -22.93 16 4 C 0.06 1.71 4.51 86.30 0.39 2.10 16 5 C -0.04 -0.89 5.42 29.85 0.16 -0.72 16 6 C -0.18 -3.90 5.76 24.59 0.14 -3.75 16 7 C -0.15 -2.90 10.05 21.22 0.21 -2.69 16 8 C -0.14 -2.35 10.18 21.22 0.22 -2.14 16 9 C -0.22 -3.53 11.23 66.72 0.75 -2.78 16 10 S 0.07 1.46 23.33 -56.49 -1.32 0.15 16 11 C 0.10 4.26 1.56 44.91 0.07 4.33 16 12 H 0.02 1.02 6.51 -2.39 -0.02 1.01 16 13 C -0.12 -4.78 8.80 71.98 0.63 -4.14 16 14 C 0.03 1.39 3.58 29.85 0.11 1.50 16 15 C -0.61 -34.71 8.48 25.60 0.22 -34.49 16 16 H 0.05 2.83 6.89 -2.91 -0.02 2.81 16 17 C -0.04 -2.27 5.46 84.66 0.46 -1.81 16 18 N -0.94 -59.11 13.65 21.45 0.29 -58.81 16 19 Si 1.11 50.85 29.90 68.60 2.05 52.91 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.06 1.82 6.52 -2.39 -0.02 1.81 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.37 6.41 -2.39 -0.02 1.35 16 26 H 0.09 2.57 6.29 -2.39 -0.02 2.55 16 27 H 0.05 2.13 6.15 -2.39 -0.01 2.12 16 28 H 0.03 0.90 6.30 -2.39 -0.02 0.88 16 29 H 0.08 2.21 5.96 -2.39 -0.01 2.20 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.08 1.72 6.65 -2.39 -0.02 1.70 16 32 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.06 6.26 -2.39 -0.01 2.04 16 37 H 0.05 2.09 6.85 -2.39 -0.02 2.07 16 38 H -0.02 -0.93 8.13 -2.39 -0.02 -0.95 16 39 H 0.00 -0.19 5.77 -2.38 -0.01 -0.21 16 40 H 0.25 16.27 7.20 -92.71 -0.67 15.60 16 Total: -1.00 -65.43 322.90 2.62 -62.80 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.12 Total: 13.61 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 4.49 Total: -47.72 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.71 Total: -81.74 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.91 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.15 kcal Total: -65.43 2.62 -62.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411212863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.145 kcal (2) G-P(sol) polarization free energy of solvation -65.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds