Wall clock time and date at job start Mon Mar 30 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46582 * 2 1 4 4 H 1.08998 * 109.47195 * 53.49196 * 3 2 1 5 5 N 1.46908 * 109.46853 * 173.49187 * 3 2 1 6 6 C 1.46899 * 110.99800 * 271.00011 * 5 3 2 7 7 C 1.53001 * 109.46911 * 180.28843 * 6 5 3 8 8 C 1.52998 * 109.47486 * 300.00548 * 7 6 5 9 9 C 1.52998 * 109.46641 * 60.00591 * 7 6 5 10 10 C 1.50696 * 109.47004 * 180.02562 * 7 6 5 11 11 H 1.08003 * 120.00389 * 2.39573 * 10 7 6 12 12 C 1.37879 * 120.00119 * 182.39629 * 10 7 6 13 13 N 1.31512 * 120.00176 * 193.02133 * 12 10 7 14 14 Si 1.86804 * 119.99937 * 13.01342 * 12 10 7 15 15 H 1.48503 * 109.46834 * 84.59597 * 14 12 10 16 16 H 1.48493 * 109.47155 * 204.59478 * 14 12 10 17 17 H 1.48496 * 109.47005 * 324.59953 * 14 12 10 18 18 C 1.50693 * 109.47201 * 293.48908 * 3 2 1 19 19 C 1.38427 * 122.53860 * 99.73815 * 18 3 2 20 20 C 1.33387 * 114.92041 * 179.76196 * 19 18 3 21 21 S 1.75888 * 109.59648 * 0.47711 * 20 19 18 22 22 C 1.33386 * 122.54271 * 280.02877 * 18 3 2 23 23 H 1.09004 * 109.46926 * 177.99576 * 1 2 3 24 24 H 1.09001 * 109.47510 * 58.00306 * 1 2 3 25 25 H 1.08997 * 109.47408 * 297.99490 * 1 2 3 26 26 H 1.09004 * 109.47131 * 119.99571 * 2 1 3 27 27 H 1.08997 * 109.47547 * 240.00344 * 2 1 3 28 28 H 1.00892 * 110.99982 * 34.95674 * 5 3 2 29 29 H 1.08994 * 109.47459 * 300.29298 * 6 5 3 30 30 H 1.09006 * 109.46806 * 60.29732 * 6 5 3 31 31 H 1.08994 * 109.46946 * 69.54462 * 8 7 6 32 32 H 1.09001 * 109.47163 * 189.54291 * 8 7 6 33 33 H 1.09002 * 109.46995 * 309.54649 * 8 7 6 34 34 H 1.09001 * 109.47664 * 59.99944 * 9 7 6 35 35 H 1.09004 * 109.47033 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.47242 * 299.99486 * 9 7 6 37 37 H 0.97001 * 120.00251 * 180.02562 * 13 12 10 38 38 H 1.07997 * 122.54095 * 0.02562 * 19 18 3 39 39 H 1.08004 * 125.20579 * 180.20667 * 20 19 18 40 40 H 1.08007 * 125.20460 * 359.97438 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5845 1.9889 0.8260 5 7 3.5005 1.4456 0.1570 6 6 3.8773 1.4746 1.5765 7 6 5.4024 1.4842 1.6993 8 6 5.9747 0.2250 1.0452 9 6 5.9626 2.7230 0.9976 10 6 5.7889 1.5133 3.1555 11 1 5.0245 1.4848 3.9179 12 6 7.1186 1.5763 3.5147 13 7 7.4752 1.3454 4.7593 14 14 8.4137 1.9894 2.2334 15 1 8.5196 3.4641 2.0943 16 1 9.7247 1.4369 2.6588 17 1 8.0261 1.3957 0.9286 18 6 1.6734 2.1049 -1.3030 19 6 0.5845 2.9504 -1.4280 20 6 0.4034 3.4569 -2.6487 21 16 1.6480 2.8465 -3.7312 22 6 2.3703 1.9165 -2.4246 23 1 -0.3633 -1.0271 -0.0359 24 1 -0.3634 0.5445 -0.8715 25 1 -0.3634 0.4824 0.9074 26 1 1.8933 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 3.9162 0.6546 -0.3114 29 1 3.4696 2.3716 2.0425 30 1 3.4782 0.5920 2.0764 31 1 5.8431 0.2849 -0.0351 32 1 7.0366 0.1453 1.2780 33 1 5.4521 -0.6522 1.4268 34 1 5.5549 3.6201 1.4635 35 1 7.0491 2.7297 1.0846 36 1 5.6830 2.7016 -0.0558 37 1 8.4106 1.3901 5.0122 38 1 -0.0665 3.1857 -0.5991 39 1 -0.3891 4.1345 -2.9304 40 1 3.2447 1.2891 -2.5164 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414162882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:40 Heat of formation + Delta-G solvation = 38.642923 kcal Electronic energy + Delta-G solvation = -18752.798589 eV Core-core repulsion = 16080.523463 eV Total energy + Delta-G solvation = -2672.275126 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.07527 -36.93688 -34.76063 -32.18945 -31.02826 -29.35804 -26.26456 -26.12567 -25.07250 -24.10022 -23.10202 -20.84536 -19.00467 -18.44842 -17.50183 -16.11769 -15.73458 -15.08915 -14.82361 -14.46475 -14.10590 -13.38075 -13.12889 -12.81061 -12.77608 -12.58574 -12.42664 -12.30349 -12.19617 -11.85505 -11.76218 -11.65821 -11.13821 -11.03732 -10.84366 -10.53402 -10.27769 -10.04723 -9.94841 -9.84805 -8.94318 -8.69718 -8.53569 -8.38278 -8.28048 -7.84318 -6.06496 -4.02600 1.11686 1.74210 2.06335 2.81890 3.34169 3.43364 3.47038 4.45573 4.56175 4.97785 5.03470 5.11661 5.24148 5.26890 5.37760 5.52443 5.60517 5.75174 5.81830 5.98739 5.98963 6.02292 6.10233 6.20914 6.28597 6.32213 6.44349 6.54387 6.63156 6.65533 6.68344 6.86034 6.94372 7.04398 7.37396 7.53505 7.60091 7.81121 7.95625 8.56326 8.97858 9.59562 11.06912 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004960 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.467449 B = 5643.796985 C = 6224.464746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.143 3.857 4 H 0.083 0.917 5 N -0.682 5.682 6 C 0.086 3.914 7 C 0.041 3.959 8 C -0.143 4.143 9 C -0.134 4.134 10 C -0.511 4.511 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.890 3.110 15 H -0.288 1.288 16 H -0.309 1.309 17 H -0.249 1.249 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.219 4.219 21 S 0.066 5.934 22 C -0.186 4.186 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.337 0.663 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.026 0.974 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.136 0.864 39 H 0.159 0.841 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 0.114 -15.008 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.029 3.971 4 H 0.101 0.899 5 N -0.312 5.312 6 C -0.042 4.042 7 C 0.039 3.961 8 C -0.201 4.201 9 C -0.191 4.191 10 C -0.549 4.549 11 H 0.089 0.911 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.724 3.276 15 H -0.216 1.216 16 H -0.239 1.239 17 H -0.175 1.175 18 C -0.092 4.092 19 C -0.154 4.154 20 C -0.354 4.354 21 S 0.329 5.671 22 C -0.321 4.321 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.177 0.823 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.228 1.003 -16.489 21.163 hybrid contribution 0.306 -0.732 1.245 1.476 sum -12.923 0.271 -15.244 19.986 Atomic orbital electron populations 1.21719 0.95613 1.01308 1.01866 1.22237 0.96745 0.97412 1.02233 1.20230 0.89754 0.93731 0.93343 0.89878 1.60673 1.06126 1.48853 1.15593 1.21991 0.97551 0.99421 0.85275 1.18465 0.90410 0.91396 0.95794 1.22288 1.01548 0.99139 0.97078 1.22160 0.98262 0.99553 0.99151 1.20867 0.93046 1.51266 0.89721 0.91111 1.24985 0.98474 0.94357 0.95104 1.69956 1.17274 1.48468 1.17877 0.87213 0.79549 0.78260 0.82624 1.21580 1.23866 1.17529 1.18877 0.95338 0.99138 0.95800 1.20080 0.98919 0.98891 0.97477 1.25453 1.04604 1.08150 0.97191 1.84172 1.24092 1.44335 1.14551 1.25303 1.05024 1.06721 0.95069 0.93135 0.92451 0.92788 0.91426 0.91929 0.84451 0.91798 0.95849 0.95507 0.92822 0.94224 0.93643 0.95282 0.93771 0.92770 0.84600 0.82333 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.74 37.16 0.36 -1.15 16 2 C -0.15 -1.75 5.36 -26.73 -0.14 -1.89 16 3 C 0.14 1.90 2.36 -68.86 -0.16 1.74 16 4 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 5 N -0.68 -10.80 5.02 -107.95 -0.54 -11.34 16 6 C 0.09 1.64 4.37 -3.82 -0.02 1.62 16 7 C 0.04 0.91 0.57 -155.66 -0.09 0.82 16 8 C -0.14 -3.01 7.24 37.16 0.27 -2.74 16 9 C -0.13 -2.97 7.52 37.16 0.28 -2.69 16 10 C -0.51 -14.00 8.62 -34.44 -0.30 -14.30 16 11 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 12 C 0.07 2.07 5.33 -17.82 -0.10 1.98 16 13 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 14 Si 0.89 22.23 22.77 -169.99 -3.87 18.36 16 15 H -0.29 -7.22 7.10 56.52 0.40 -6.82 16 16 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 17 H -0.25 -5.77 4.66 56.52 0.26 -5.50 16 18 C -0.08 -1.00 4.14 -106.25 -0.44 -1.44 16 19 C -0.12 -1.40 9.12 -41.21 -0.38 -1.77 16 20 C -0.22 -2.30 11.23 29.04 0.33 -1.97 16 21 S 0.07 0.72 23.34 -107.50 -2.51 -1.79 16 22 C -0.19 -2.31 10.52 29.04 0.31 -2.00 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.58 6.73 -51.93 -0.35 0.24 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.87 7.64 -51.93 -0.40 0.47 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.34 5.13 6.66 -39.30 -0.26 4.87 16 29 H 0.06 1.27 8.05 -51.93 -0.42 0.86 16 30 H 0.02 0.45 7.65 -51.93 -0.40 0.05 16 31 H 0.03 0.49 7.06 -51.93 -0.37 0.12 16 32 H 0.05 1.22 4.36 -51.93 -0.23 0.99 16 33 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.67 2.18 -51.93 -0.11 0.56 16 36 H 0.04 0.88 7.60 -51.93 -0.39 0.49 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.16 1.94 7.99 -52.48 -0.42 1.52 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -29.32 316.77 -7.84 -37.17 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.39 Total: 3.32 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -0.08 Total: -23.81 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.23 Total: -38.01 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -3.87 Total: 18.36 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.32 -7.84 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds