Wall clock time and date at job start Mon Mar 30 2020 00:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46582 * 2 1 4 4 H 1.08998 * 109.47195 * 53.49196 * 3 2 1 5 5 N 1.46908 * 109.46853 * 173.49187 * 3 2 1 6 6 C 1.46899 * 110.99800 * 271.00011 * 5 3 2 7 7 C 1.53001 * 109.46911 * 180.28843 * 6 5 3 8 8 C 1.52998 * 109.47486 * 300.00548 * 7 6 5 9 9 C 1.52998 * 109.46641 * 60.00591 * 7 6 5 10 10 C 1.50696 * 109.47004 * 180.02562 * 7 6 5 11 11 H 1.08003 * 120.00389 * 2.39573 * 10 7 6 12 12 C 1.37879 * 120.00119 * 182.39629 * 10 7 6 13 13 N 1.31512 * 120.00176 * 193.02133 * 12 10 7 14 14 Si 1.86804 * 119.99937 * 13.01342 * 12 10 7 15 15 H 1.48503 * 109.46834 * 84.59597 * 14 12 10 16 16 H 1.48493 * 109.47155 * 204.59478 * 14 12 10 17 17 H 1.48496 * 109.47005 * 324.59953 * 14 12 10 18 18 C 1.50693 * 109.47201 * 293.48908 * 3 2 1 19 19 C 1.38427 * 122.53860 * 99.73815 * 18 3 2 20 20 C 1.33387 * 114.92041 * 179.76196 * 19 18 3 21 21 S 1.75888 * 109.59648 * 0.47711 * 20 19 18 22 22 C 1.33386 * 122.54271 * 280.02877 * 18 3 2 23 23 H 1.09004 * 109.46926 * 177.99576 * 1 2 3 24 24 H 1.09001 * 109.47510 * 58.00306 * 1 2 3 25 25 H 1.08997 * 109.47408 * 297.99490 * 1 2 3 26 26 H 1.09004 * 109.47131 * 119.99571 * 2 1 3 27 27 H 1.08997 * 109.47547 * 240.00344 * 2 1 3 28 28 H 1.00892 * 110.99982 * 34.95674 * 5 3 2 29 29 H 1.08994 * 109.47459 * 300.29298 * 6 5 3 30 30 H 1.09006 * 109.46806 * 60.29732 * 6 5 3 31 31 H 1.08994 * 109.46946 * 69.54462 * 8 7 6 32 32 H 1.09001 * 109.47163 * 189.54291 * 8 7 6 33 33 H 1.09002 * 109.46995 * 309.54649 * 8 7 6 34 34 H 1.09001 * 109.47664 * 59.99944 * 9 7 6 35 35 H 1.09004 * 109.47033 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.47242 * 299.99486 * 9 7 6 37 37 H 0.97001 * 120.00251 * 180.02562 * 13 12 10 38 38 H 1.07997 * 122.54095 * 0.02562 * 19 18 3 39 39 H 1.08004 * 125.20579 * 180.20667 * 20 19 18 40 40 H 1.08007 * 125.20460 * 359.97438 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5845 1.9889 0.8260 5 7 3.5005 1.4456 0.1570 6 6 3.8773 1.4746 1.5765 7 6 5.4024 1.4842 1.6993 8 6 5.9747 0.2250 1.0452 9 6 5.9626 2.7230 0.9976 10 6 5.7889 1.5133 3.1555 11 1 5.0245 1.4848 3.9179 12 6 7.1186 1.5763 3.5147 13 7 7.4752 1.3454 4.7593 14 14 8.4137 1.9894 2.2334 15 1 8.5196 3.4641 2.0943 16 1 9.7247 1.4369 2.6588 17 1 8.0261 1.3957 0.9286 18 6 1.6734 2.1049 -1.3030 19 6 0.5845 2.9504 -1.4280 20 6 0.4034 3.4569 -2.6487 21 16 1.6480 2.8465 -3.7312 22 6 2.3703 1.9165 -2.4246 23 1 -0.3633 -1.0271 -0.0359 24 1 -0.3634 0.5445 -0.8715 25 1 -0.3634 0.4824 0.9074 26 1 1.8933 -0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 3.9162 0.6546 -0.3114 29 1 3.4696 2.3716 2.0425 30 1 3.4782 0.5920 2.0764 31 1 5.8431 0.2849 -0.0351 32 1 7.0366 0.1453 1.2780 33 1 5.4521 -0.6522 1.4268 34 1 5.5549 3.6201 1.4635 35 1 7.0491 2.7297 1.0846 36 1 5.6830 2.7016 -0.0558 37 1 8.4106 1.3901 5.0122 38 1 -0.0665 3.1857 -0.5991 39 1 -0.3891 4.1345 -2.9304 40 1 3.2447 1.2891 -2.5164 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414162882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:40 Heat of formation + Delta-G solvation = 20.840366 kcal Electronic energy + Delta-G solvation = -18753.570566 eV Core-core repulsion = 16080.523463 eV Total energy + Delta-G solvation = -2673.047103 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14227 -38.44428 -36.01518 -34.00920 -32.45792 -30.31192 -27.93804 -27.37745 -27.02597 -25.41706 -24.19468 -21.81741 -20.69870 -19.44956 -18.49076 -18.04499 -17.38003 -16.52848 -15.90658 -15.60283 -15.27865 -14.95177 -14.82230 -14.32475 -14.07850 -13.87728 -13.69462 -13.55267 -13.45984 -13.25558 -12.94568 -12.74530 -12.49301 -12.29927 -12.07102 -11.91691 -11.83926 -11.81037 -11.60265 -11.37193 -10.91850 -10.57411 -10.30565 -9.55866 -9.24994 -9.07550 -8.28168 -6.27209 0.25276 0.90155 1.20422 1.36458 1.38912 1.50038 1.91437 2.36190 3.09448 3.37204 3.97837 4.06947 4.26915 4.30242 4.31340 4.40769 4.53539 4.58028 4.64983 4.71116 4.82881 4.87803 4.92734 4.96930 4.98914 5.10209 5.12945 5.16245 5.22299 5.27677 5.34166 5.38979 5.54498 5.60962 5.71068 5.78918 5.87958 6.24884 6.36435 6.61207 6.80417 7.38300 8.89045 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004960 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.467449 B = 5643.796985 C = 6224.464746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.145 3.855 4 H 0.074 0.926 5 N -0.678 5.678 6 C 0.101 3.899 7 C 0.035 3.965 8 C -0.140 4.140 9 C -0.130 4.130 10 C -0.510 4.510 11 H 0.029 0.971 12 C 0.017 3.983 13 N -0.949 5.949 14 Si 0.945 3.055 15 H -0.288 1.288 16 H -0.317 1.317 17 H -0.213 1.213 18 C -0.087 4.087 19 C -0.138 4.138 20 C -0.214 4.214 21 S 0.082 5.918 22 C -0.202 4.202 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.343 0.657 29 H 0.050 0.950 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.262 0.738 38 H 0.147 0.853 39 H 0.183 0.817 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.654 0.306 -18.074 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.032 3.968 4 H 0.093 0.907 5 N -0.309 5.309 6 C -0.028 4.028 7 C 0.034 3.966 8 C -0.197 4.197 9 C -0.187 4.187 10 C -0.548 4.548 11 H 0.048 0.952 12 C -0.180 4.180 13 N -0.589 5.589 14 Si 0.775 3.225 15 H -0.216 1.216 16 H -0.247 1.247 17 H -0.137 1.137 18 C -0.100 4.100 19 C -0.169 4.169 20 C -0.349 4.349 21 S 0.345 5.655 22 C -0.338 4.338 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.164 0.836 39 H 0.201 0.799 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.140 1.191 -19.589 24.189 hybrid contribution 0.450 -0.777 2.224 2.399 sum -13.689 0.414 -17.365 22.116 Atomic orbital electron populations 1.21673 0.94275 1.02001 1.02065 1.22160 0.97905 0.96194 1.01845 1.20212 0.87978 0.94743 0.93831 0.90738 1.60580 1.08082 1.49235 1.12992 1.21623 0.95265 0.98466 0.87412 1.18470 0.92738 0.92703 0.92670 1.22186 1.00225 0.98154 0.99129 1.22092 0.97431 0.98640 1.00522 1.21222 0.92041 1.49650 0.91918 0.95220 1.25782 1.00848 0.94494 0.96894 1.70100 1.17687 1.50869 1.20284 0.86323 0.76347 0.77957 0.81827 1.21610 1.24699 1.13728 1.18844 0.96125 0.99743 0.95240 1.20210 0.99085 0.99204 0.98378 1.25798 1.04711 1.07696 0.96666 1.84135 1.23866 1.43655 1.13851 1.25437 1.05367 1.07291 0.95697 0.92212 0.92091 0.92729 0.92691 0.91343 0.83781 0.93165 0.96650 0.92057 0.94402 0.93988 0.94512 0.96141 0.91151 0.92894 0.83566 0.79938 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.74 71.98 0.70 -1.96 16 2 C -0.14 -3.14 5.36 30.60 0.16 -2.98 16 3 C 0.14 3.65 2.36 44.17 0.10 3.75 16 4 H 0.07 2.00 7.68 -2.39 -0.02 1.99 16 5 N -0.68 -20.16 5.02 -495.44 -2.48 -22.64 16 6 C 0.10 3.82 4.37 86.30 0.38 4.19 16 7 C 0.04 1.54 0.57 -52.93 -0.03 1.51 16 8 C -0.14 -5.54 7.24 71.98 0.52 -5.02 16 9 C -0.13 -5.45 7.52 71.98 0.54 -4.91 16 10 C -0.51 -28.53 8.62 25.60 0.22 -28.31 16 11 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 12 C 0.02 0.96 5.33 84.66 0.45 1.42 16 13 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 14 Si 0.94 45.54 22.77 68.60 1.56 47.11 16 15 H -0.29 -13.82 7.10 99.48 0.71 -13.11 16 16 H -0.32 -15.60 7.11 99.48 0.71 -14.89 16 17 H -0.21 -9.03 4.66 99.48 0.46 -8.57 16 18 C -0.09 -2.01 4.14 -20.92 -0.09 -2.10 16 19 C -0.14 -2.82 9.12 21.22 0.19 -2.63 16 20 C -0.21 -3.85 11.23 66.72 0.75 -3.10 16 21 S 0.08 1.57 23.34 -56.49 -1.32 0.25 16 22 C -0.20 -4.53 10.52 66.72 0.70 -3.83 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.11 6.73 -2.39 -0.02 1.09 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 1.35 7.64 -2.38 -0.02 1.34 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.34 9.50 6.66 -89.70 -0.60 8.90 16 29 H 0.05 2.01 8.05 -2.39 -0.02 1.99 16 30 H 0.02 0.60 7.65 -2.38 -0.02 0.58 16 31 H 0.06 2.01 7.06 -2.39 -0.02 1.99 16 32 H 0.04 1.61 4.36 -2.39 -0.01 1.60 16 33 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.89 2.18 -2.38 -0.01 0.89 16 36 H 0.07 2.57 7.60 -2.38 -0.02 2.55 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.16 3.49 7.99 -2.91 -0.02 3.46 16 Total: -1.00 -63.76 316.77 2.84 -60.91 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.18 Total: 17.93 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 4.61 Total: -43.95 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.19 Total: -82.25 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.56 Total: 47.11 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -63.76 2.84 -60.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.753 kcal (2) G-P(sol) polarization free energy of solvation -63.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds