Wall clock time and date at job start Mon Mar 30 2020 00:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46987 * 2 1 4 4 N 1.46899 * 109.47044 * 119.99548 * 2 1 3 5 5 C 1.46898 * 111.00372 * 83.53764 * 4 2 1 6 6 C 1.52999 * 109.46978 * 70.00942 * 5 4 2 7 7 C 1.50700 * 109.47175 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99860 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99916 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00197 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99575 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47490 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47179 * 120.00318 * 11 9 7 14 14 H 1.48500 * 109.47047 * 240.00176 * 11 9 7 15 15 C 1.46903 * 111.00079 * 319.58413 * 4 2 1 16 16 H 1.09000 * 109.47377 * 49.02135 * 15 4 2 17 17 C 1.53005 * 109.46871 * 289.02286 * 15 4 2 18 18 C 1.50699 * 109.47150 * 169.02714 * 15 4 2 19 19 C 1.38432 * 122.53658 * 229.61005 * 18 15 4 20 20 C 1.33387 * 114.91962 * 179.75885 * 19 18 15 21 21 S 1.75891 * 109.59304 * 0.47698 * 20 19 18 22 22 C 1.33385 * 122.54198 * 49.89374 * 18 15 4 23 23 H 1.09002 * 109.46903 * 307.60883 * 1 2 3 24 24 H 1.08998 * 109.46838 * 67.60656 * 1 2 3 25 25 H 1.08999 * 109.46788 * 187.60398 * 1 2 3 26 26 H 1.08995 * 109.47534 * 239.99424 * 2 1 3 27 27 H 1.08997 * 109.46763 * 160.27594 * 3 2 1 28 28 H 1.09004 * 109.46689 * 280.27166 * 3 2 1 29 29 H 1.08996 * 109.47265 * 40.27016 * 3 2 1 30 30 H 1.08990 * 109.47709 * 190.01505 * 5 4 2 31 31 H 1.09008 * 109.46610 * 310.01386 * 5 4 2 32 32 H 1.09002 * 109.47417 * 300.00346 * 6 5 4 33 33 H 1.08998 * 109.47065 * 60.00659 * 6 5 4 34 34 H 0.96999 * 119.99584 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.46605 * 205.18018 * 17 15 4 36 36 H 1.08995 * 109.47285 * 325.18397 * 17 15 4 37 37 H 1.09003 * 109.46927 * 85.19060 * 17 15 4 38 38 H 1.08000 * 122.53618 * 359.97438 * 19 18 15 39 39 H 1.07998 * 125.20342 * 180.20650 * 20 19 18 40 40 H 1.08001 * 125.20523 * 359.97438 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0497 -2.1464 0.9927 6 6 3.1578 -2.4973 -0.0021 7 6 3.1882 -3.9890 -0.2148 8 1 2.4870 -4.6232 0.3072 9 6 4.1105 -4.5438 -1.0764 10 7 4.9641 -3.7715 -1.7124 11 14 4.1477 -6.3927 -1.3404 12 1 3.0917 -7.0320 -0.5149 13 1 3.9039 -6.6930 -2.7742 14 1 5.4765 -6.9229 -0.9426 15 6 1.2107 -0.3445 2.3753 16 1 0.1533 -0.4523 2.1337 17 6 1.4962 1.1030 2.7806 18 6 1.5616 -1.2641 3.5165 19 6 0.6015 -1.9342 4.2550 20 6 1.0813 -2.7122 5.2264 21 16 2.8371 -2.6102 5.2507 22 6 2.8206 -1.4898 3.8950 23 1 -0.3633 0.6272 0.8141 24 1 -0.3633 0.3915 -0.9502 25 1 -0.3633 -1.0186 0.1360 26 1 1.8934 -0.5139 -0.8899 27 1 3.0732 1.4626 0.3468 28 1 1.9883 1.8462 -1.0113 29 1 1.4219 2.0465 0.6642 30 1 2.2430 -2.6447 1.9426 31 1 1.0889 -2.4771 0.5980 32 1 2.9644 -1.9991 -0.9522 33 1 4.1185 -2.1667 0.3926 34 1 5.6132 -4.1620 -2.3182 35 1 1.2815 1.2324 3.8414 36 1 2.5446 1.3333 2.5913 37 1 0.8657 1.7746 2.1978 38 1 -0.4558 -1.8371 4.0572 39 1 0.4830 -3.3096 5.8983 40 1 3.6960 -1.0519 3.4385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421008423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:59 Heat of formation + Delta-G solvation = 36.608660 kcal Electronic energy + Delta-G solvation = -19044.434473 eV Core-core repulsion = 16372.071135 eV Total energy + Delta-G solvation = -2672.363338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.53315 -36.87121 -33.38928 -31.89848 -31.27052 -28.51528 -28.04719 -26.95281 -24.39349 -23.95290 -21.76492 -20.71979 -19.17360 -17.98057 -17.52116 -16.40224 -15.36167 -15.11733 -14.49124 -14.40627 -13.90773 -13.58540 -13.15909 -12.75254 -12.54921 -12.34016 -12.23971 -12.11711 -12.00518 -11.88544 -11.54203 -11.22333 -11.11054 -10.95789 -10.77473 -10.65589 -10.49067 -10.26292 -10.12372 -9.71244 -9.26802 -9.04567 -8.45829 -8.27981 -8.08701 -7.59642 -5.95403 -3.96776 1.30307 1.93860 2.26368 2.96307 3.33143 3.40611 3.44964 4.40086 4.56474 5.01841 5.25634 5.29173 5.40686 5.46772 5.54513 5.56443 5.61184 5.72203 5.87981 5.90786 5.96322 6.01527 6.13516 6.16931 6.23993 6.26005 6.38249 6.42224 6.58377 6.64359 6.68941 6.77107 6.80766 7.11364 7.61174 7.70302 7.88416 7.99706 8.15826 8.50559 9.10897 9.66524 11.15932 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.007154 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.119671 B = 3913.126912 C = 5321.772641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 C -0.144 4.144 4 N -0.523 5.523 5 C 0.057 3.943 6 C 0.033 3.967 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.132 3.868 16 H 0.052 0.948 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.126 4.126 20 C -0.221 4.221 21 S 0.078 5.922 22 C -0.169 4.169 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.259 0.741 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.326 8.604 11.031 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 C -0.201 4.201 4 N -0.247 5.247 5 C -0.070 4.070 6 C -0.005 4.005 7 C -0.556 4.556 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.021 3.979 16 H 0.070 0.930 17 C -0.197 4.197 18 C -0.112 4.112 19 C -0.158 4.158 20 C -0.357 4.357 21 S 0.341 5.659 22 C -0.305 4.305 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.553 8.079 11.904 15.809 hybrid contribution -1.873 -0.877 -1.297 2.441 sum -8.426 7.202 10.607 15.342 Atomic orbital electron populations 1.22447 0.98352 1.01597 1.01421 1.21722 0.91956 0.95401 0.94557 1.22082 1.02046 0.95371 1.00642 1.62527 1.50478 1.09908 1.01804 1.22437 0.99037 0.84351 1.01152 1.19052 0.93117 0.95358 0.92956 1.21235 1.16592 0.92652 1.25110 0.92946 1.24973 0.95632 0.97727 0.95935 1.69983 1.19835 1.34645 1.28813 0.86600 0.77868 0.86082 0.77843 1.19812 1.21089 1.21007 1.20374 0.95987 0.93159 0.88353 0.93033 1.22080 1.02803 0.94787 1.00058 1.18804 0.92322 1.01022 0.99097 1.20045 1.00436 0.98681 0.96593 1.25433 0.97306 1.07301 1.05629 1.84210 1.04070 1.45141 1.32457 1.25484 1.01412 1.03335 1.00257 0.92643 0.92660 0.92733 0.89067 0.91628 0.93362 0.92787 0.91326 0.96585 0.96752 0.95990 0.93165 0.93078 0.91204 0.92530 0.84901 0.82391 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 7.83 37.16 0.29 -2.24 16 2 C 0.07 1.18 2.72 -67.71 -0.18 0.99 16 3 C -0.14 -1.99 8.16 37.16 0.30 -1.69 16 4 N -0.52 -9.18 4.04 -220.09 -0.89 -10.07 16 5 C 0.06 1.21 4.41 -3.83 -0.02 1.19 16 6 C 0.03 0.85 5.01 -27.88 -0.14 0.71 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.13 1.95 1.91 -68.86 -0.13 1.82 16 16 H 0.05 0.75 5.51 -51.93 -0.29 0.46 16 17 C -0.14 -1.75 7.81 37.16 0.29 -1.46 16 18 C -0.10 -1.52 3.00 -106.25 -0.32 -1.84 16 19 C -0.13 -1.74 9.93 -41.21 -0.41 -2.15 16 20 C -0.22 -2.87 11.23 29.04 0.33 -2.54 16 21 S 0.08 1.08 23.34 -107.50 -2.51 -1.43 16 22 C -0.17 -2.63 9.28 29.04 0.27 -2.36 16 23 H 0.05 0.69 5.79 -51.93 -0.30 0.39 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.83 7.03 -51.93 -0.37 0.47 16 26 H 0.09 1.76 6.09 -51.93 -0.32 1.44 16 27 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.65 5.13 -51.93 -0.27 0.38 16 30 H 0.07 1.50 5.32 -51.93 -0.28 1.22 16 31 H 0.02 0.35 7.08 -51.92 -0.37 -0.02 16 32 H 0.01 0.40 6.43 -51.93 -0.33 0.06 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 36 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 37 H 0.06 0.64 5.41 -51.93 -0.28 0.36 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -29.91 319.22 -9.09 -39.00 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.09 Total: 0.17 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -0.13 Total: -23.12 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.15 Total: -36.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.91 -9.09 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421008423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.613 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds