Wall clock time and date at job start Mon Mar 30 2020 00:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46987 * 2 1 4 4 N 1.46899 * 109.47044 * 119.99548 * 2 1 3 5 5 C 1.46898 * 111.00372 * 83.53764 * 4 2 1 6 6 C 1.52999 * 109.46978 * 70.00942 * 5 4 2 7 7 C 1.50700 * 109.47175 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99860 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99916 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00197 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99575 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47490 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47179 * 120.00318 * 11 9 7 14 14 H 1.48500 * 109.47047 * 240.00176 * 11 9 7 15 15 C 1.46903 * 111.00079 * 319.58413 * 4 2 1 16 16 H 1.09000 * 109.47377 * 49.02135 * 15 4 2 17 17 C 1.53005 * 109.46871 * 289.02286 * 15 4 2 18 18 C 1.50699 * 109.47150 * 169.02714 * 15 4 2 19 19 C 1.38432 * 122.53658 * 229.61005 * 18 15 4 20 20 C 1.33387 * 114.91962 * 179.75885 * 19 18 15 21 21 S 1.75891 * 109.59304 * 0.47698 * 20 19 18 22 22 C 1.33385 * 122.54198 * 49.89374 * 18 15 4 23 23 H 1.09002 * 109.46903 * 307.60883 * 1 2 3 24 24 H 1.08998 * 109.46838 * 67.60656 * 1 2 3 25 25 H 1.08999 * 109.46788 * 187.60398 * 1 2 3 26 26 H 1.08995 * 109.47534 * 239.99424 * 2 1 3 27 27 H 1.08997 * 109.46763 * 160.27594 * 3 2 1 28 28 H 1.09004 * 109.46689 * 280.27166 * 3 2 1 29 29 H 1.08996 * 109.47265 * 40.27016 * 3 2 1 30 30 H 1.08990 * 109.47709 * 190.01505 * 5 4 2 31 31 H 1.09008 * 109.46610 * 310.01386 * 5 4 2 32 32 H 1.09002 * 109.47417 * 300.00346 * 6 5 4 33 33 H 1.08998 * 109.47065 * 60.00659 * 6 5 4 34 34 H 0.96999 * 119.99584 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.46605 * 205.18018 * 17 15 4 36 36 H 1.08995 * 109.47285 * 325.18397 * 17 15 4 37 37 H 1.09003 * 109.46927 * 85.19060 * 17 15 4 38 38 H 1.08000 * 122.53618 * 359.97438 * 19 18 15 39 39 H 1.07998 * 125.20342 * 180.20650 * 20 19 18 40 40 H 1.08001 * 125.20523 * 359.97438 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0497 -2.1464 0.9927 6 6 3.1578 -2.4973 -0.0021 7 6 3.1882 -3.9890 -0.2148 8 1 2.4870 -4.6232 0.3072 9 6 4.1105 -4.5438 -1.0764 10 7 4.9641 -3.7715 -1.7124 11 14 4.1477 -6.3927 -1.3404 12 1 3.0917 -7.0320 -0.5149 13 1 3.9039 -6.6930 -2.7742 14 1 5.4765 -6.9229 -0.9426 15 6 1.2107 -0.3445 2.3753 16 1 0.1533 -0.4523 2.1337 17 6 1.4962 1.1030 2.7806 18 6 1.5616 -1.2641 3.5165 19 6 0.6015 -1.9342 4.2550 20 6 1.0813 -2.7122 5.2264 21 16 2.8371 -2.6102 5.2507 22 6 2.8206 -1.4898 3.8950 23 1 -0.3633 0.6272 0.8141 24 1 -0.3633 0.3915 -0.9502 25 1 -0.3633 -1.0186 0.1360 26 1 1.8934 -0.5139 -0.8899 27 1 3.0732 1.4626 0.3468 28 1 1.9883 1.8462 -1.0113 29 1 1.4219 2.0465 0.6642 30 1 2.2430 -2.6447 1.9426 31 1 1.0889 -2.4771 0.5980 32 1 2.9644 -1.9991 -0.9522 33 1 4.1185 -2.1667 0.3926 34 1 5.6132 -4.1620 -2.3182 35 1 1.2815 1.2324 3.8414 36 1 2.5446 1.3333 2.5913 37 1 0.8657 1.7746 2.1978 38 1 -0.4558 -1.8371 4.0572 39 1 0.4830 -3.3096 5.8983 40 1 3.6960 -1.0519 3.4385 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421008423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:58 Heat of formation + Delta-G solvation = 19.661013 kcal Electronic energy + Delta-G solvation = -19045.169378 eV Core-core repulsion = 16372.071135 eV Total energy + Delta-G solvation = -2673.098243 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80683 -38.07667 -35.47181 -33.22825 -32.89869 -29.83215 -29.57468 -28.13629 -26.05041 -25.39984 -23.08860 -22.38901 -20.47208 -19.20964 -18.74183 -18.44153 -16.74164 -16.56321 -16.40711 -15.59604 -15.25569 -15.04883 -14.46259 -14.25923 -13.90171 -13.81590 -13.46777 -13.40006 -13.28725 -13.15601 -12.89868 -12.84542 -12.77017 -12.37315 -12.34182 -12.08330 -11.91562 -11.67872 -11.54235 -11.37247 -11.16176 -11.03724 -10.52107 -9.56750 -9.21929 -9.01675 -8.19861 -6.30314 0.19689 0.84751 1.16523 1.37328 1.37791 1.50945 1.84807 2.39219 3.13153 3.13288 3.87901 4.03817 4.20713 4.28448 4.38382 4.41840 4.50666 4.55301 4.65282 4.66968 4.79535 4.83063 4.90908 4.93990 5.03092 5.05969 5.11436 5.16207 5.21623 5.33990 5.46096 5.47207 5.55014 5.56297 5.66265 5.74326 5.83318 6.18303 6.42962 6.50172 6.86960 7.38250 8.92228 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.007154 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.119671 B = 3913.126912 C = 5321.772641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 C -0.135 4.135 4 N -0.531 5.531 5 C 0.081 3.919 6 C 0.044 3.956 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.003 3.997 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.277 1.277 15 C 0.131 3.869 16 H 0.062 0.938 17 C -0.132 4.132 18 C -0.104 4.104 19 C -0.140 4.140 20 C -0.210 4.210 21 S 0.078 5.922 22 C -0.197 4.197 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.009 0.991 32 H -0.010 1.010 33 H -0.012 1.012 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.189 0.811 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 8.478 12.103 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.041 4.041 3 C -0.193 4.193 4 N -0.255 5.255 5 C -0.047 4.047 6 C 0.007 3.993 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.570 5.570 11 Si 0.785 3.215 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.203 1.203 15 C 0.021 3.979 16 H 0.080 0.920 17 C -0.190 4.190 18 C -0.117 4.117 19 C -0.171 4.171 20 C -0.345 4.345 21 S 0.342 5.658 22 C -0.333 4.333 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.172 0.828 39 H 0.206 0.794 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.472 7.969 12.986 17.433 hybrid contribution -1.259 -0.805 -1.621 2.205 sum -9.731 7.164 11.365 16.588 Atomic orbital electron populations 1.22360 0.96108 1.01285 1.03190 1.21747 0.93812 0.96183 0.92399 1.22009 1.01459 0.93872 1.01925 1.62446 1.52253 1.07341 1.03454 1.21952 0.96478 0.87158 0.99082 1.18846 0.93229 0.94255 0.92966 1.21614 1.16874 0.93894 1.25428 0.92867 1.25905 0.95044 1.03055 0.95445 1.70114 1.20493 1.37002 1.29375 0.85468 0.78256 0.79641 0.78120 1.18792 1.20195 1.20261 1.20510 0.95893 0.94594 0.86896 0.92002 1.22014 1.02509 0.93273 1.01161 1.19017 0.92491 1.01036 0.99152 1.20260 1.01257 0.98848 0.96732 1.25832 0.96601 1.06629 1.05429 1.84168 1.05491 1.44589 1.31571 1.25447 1.01323 1.04866 1.01701 0.90256 0.91263 0.94242 0.93099 0.93173 0.92325 0.90191 0.91793 0.97295 0.99155 0.99362 0.92832 0.91795 0.92304 0.90676 0.82778 0.79427 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 7.83 71.98 0.56 -3.97 16 2 C 0.07 2.20 2.72 44.92 0.12 2.32 16 3 C -0.14 -3.62 8.16 71.98 0.59 -3.03 16 4 N -0.53 -18.92 4.04 -850.25 -3.44 -22.35 16 5 C 0.08 3.56 4.41 86.30 0.38 3.94 16 6 C 0.04 2.45 5.01 29.85 0.15 2.60 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.00 0.20 5.46 84.66 0.46 0.66 16 10 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 11 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 C 0.13 3.71 1.91 44.17 0.08 3.80 16 16 H 0.06 1.65 5.51 -2.39 -0.01 1.63 16 17 C -0.13 -3.04 7.81 71.98 0.56 -2.47 16 18 C -0.10 -3.06 3.00 -20.92 -0.06 -3.12 16 19 C -0.14 -3.55 9.93 21.22 0.21 -3.34 16 20 C -0.21 -4.94 11.23 66.72 0.75 -4.19 16 21 S 0.08 2.12 23.34 -56.49 -1.32 0.80 16 22 C -0.20 -6.22 9.28 66.72 0.62 -5.60 16 23 H 0.08 1.72 5.79 -2.39 -0.01 1.71 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.04 1.16 7.03 -2.39 -0.02 1.14 16 26 H 0.05 2.07 6.09 -2.39 -0.01 2.06 16 27 H 0.05 1.49 7.97 -2.39 -0.02 1.47 16 28 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.08 1.70 5.13 -2.39 -0.01 1.69 16 30 H 0.06 2.87 5.32 -2.39 -0.01 2.85 16 31 H 0.01 0.40 7.08 -2.38 -0.02 0.38 16 32 H -0.01 -0.58 6.43 -2.39 -0.02 -0.60 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 35 H 0.06 1.33 7.90 -2.38 -0.02 1.31 16 36 H 0.06 1.50 7.54 -2.39 -0.02 1.48 16 37 H 0.07 1.43 5.41 -2.39 -0.01 1.42 16 38 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 39 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.15 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -66.25 319.22 3.23 -63.01 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.01 Total: 12.67 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 4.66 Total: -44.02 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.15 Total: -79.94 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.80 kcal Total: -66.25 3.23 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421008423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.676 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds