Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48507 * 109.47130 * 266.33150 * 3 2 1 5 5 H 1.48502 * 109.47044 * 26.32860 * 3 2 1 6 6 H 1.48492 * 109.47281 * 146.33471 * 3 2 1 7 7 C 1.37875 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99848 * 0.80504 * 7 2 1 9 9 C 1.50696 * 120.00320 * 180.80587 * 7 2 1 10 10 C 1.52999 * 115.55200 * 84.78611 * 9 7 2 11 11 N 1.46500 * 109.47082 * 64.75674 * 10 9 7 12 12 C 1.34775 * 120.00200 * 184.68127 * 11 10 9 13 13 O 1.21284 * 119.99602 * 5.42378 * 12 11 10 14 14 C 1.50703 * 120.00241 * 185.42352 * 12 11 10 15 15 C 1.52994 * 109.47160 * 144.90804 * 14 12 11 16 16 C 1.53002 * 109.46938 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47417 * 300.00018 * 16 15 14 18 18 O 1.42904 * 109.47108 * 300.00152 * 17 16 15 19 19 C 1.53002 * 109.47366 * 59.99722 * 17 16 15 20 20 C 1.53002 * 109.47080 * 300.00484 * 19 17 16 21 21 C 1.52997 * 117.49999 * 230.45625 * 9 7 2 22 22 C 1.53002 * 117.49954 * 299.11661 * 9 7 2 23 23 H 0.97001 * 120.00093 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47131 * 304.76518 * 10 9 7 25 25 H 1.08991 * 109.47564 * 184.76462 * 10 9 7 26 26 H 0.97001 * 119.99788 * 4.69107 * 11 10 9 27 27 H 1.08994 * 109.46857 * 24.90376 * 14 12 11 28 28 H 1.09003 * 109.47456 * 59.99911 * 15 14 12 29 29 H 1.09000 * 109.47211 * 299.99955 * 15 14 12 30 30 H 1.09003 * 109.46858 * 59.99865 * 16 15 14 31 31 H 1.09000 * 109.47133 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.47508 * 179.97438 * 17 16 15 33 33 H 0.96702 * 113.99919 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.47030 * 60.00079 * 19 17 16 35 35 H 1.09000 * 109.47495 * 179.97438 * 19 17 16 36 36 H 1.09000 * 109.47133 * 179.97438 * 20 19 17 37 37 H 1.09003 * 109.46858 * 299.99700 * 20 19 17 38 38 H 1.09003 * 117.50320 * 214.99769 * 21 9 7 39 39 H 1.09003 * 117.50044 * 0.02632 * 21 9 7 40 40 H 1.09003 * 117.49557 * 359.97438 * 22 9 7 41 41 H 1.08997 * 117.50104 * 144.97091 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5743 2.0017 -1.3973 5 1 1.4099 2.6738 0.6210 6 1 3.5058 1.4638 0.7761 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0141 9 6 3.5115 -1.1941 0.0178 10 6 4.1546 -1.0790 1.4013 11 7 3.8240 -2.2660 2.1938 12 6 4.2053 -2.3424 3.4842 13 8 4.7346 -1.3903 4.0174 14 6 3.9739 -3.6107 4.2645 15 6 5.1292 -3.8247 5.2443 16 6 4.8939 -5.1120 6.0370 17 6 3.5806 -4.9999 6.8138 18 8 3.6529 -3.8926 7.7142 19 6 2.4252 -4.7858 5.8340 20 6 2.6605 -3.4985 5.0413 21 6 4.2306 -2.0503 -1.0264 22 6 4.2323 -0.5249 -1.1542 23 1 -0.4850 0.8400 0.0004 24 1 3.7765 -0.1892 1.9049 25 1 5.2366 -1.0035 1.2939 26 1 3.3309 -2.9970 1.7896 27 1 3.9190 -4.4550 3.5774 28 1 5.1841 -2.9803 5.9314 29 1 6.0650 -3.9042 4.6910 30 1 4.8388 -5.9567 5.3501 31 1 5.7173 -5.2648 6.7347 32 1 3.4128 -5.9172 7.3781 33 1 2.8525 -3.7609 8.2407 34 1 2.3700 -5.6304 5.1471 35 1 1.4894 -4.7064 6.3873 36 1 1.8376 -3.3462 4.3430 37 1 2.7156 -2.6539 5.7282 38 1 5.1620 -2.5316 -0.7279 39 1 3.6139 -2.6133 -1.7271 40 1 3.6165 -0.0850 -1.9387 41 1 5.1644 -0.0023 -0.9395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435953593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = -110.440734 kcal Electronic energy + Delta-G solvation = -21019.388521 eV Core-core repulsion = 17897.895771 eV Total energy + Delta-G solvation = -3121.492749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.21534 -39.52599 -38.61423 -35.84853 -34.98570 -34.22879 -31.77711 -31.13273 -28.45859 -27.15731 -24.11399 -23.64490 -23.31923 -21.36018 -21.05488 -20.46404 -18.60544 -18.02915 -17.54387 -17.06582 -16.87523 -16.40521 -15.95179 -15.50507 -15.46472 -14.86749 -14.74431 -14.36972 -14.21456 -14.01151 -13.74937 -13.19858 -13.10736 -13.07201 -13.02834 -12.62657 -12.27091 -12.19806 -12.01969 -11.93846 -11.61977 -11.50652 -11.16191 -11.01413 -10.81449 -10.67671 -10.54702 -10.27908 -9.88128 -8.32048 -6.37498 1.30810 1.36845 1.45994 1.69626 2.31337 2.34347 3.03421 3.23133 3.48022 3.68415 3.79005 3.91502 4.02544 4.15865 4.26670 4.29605 4.35317 4.41087 4.45106 4.48767 4.51405 4.60101 4.79319 4.84402 4.86328 4.95985 5.08066 5.08686 5.11263 5.24889 5.26368 5.30323 5.32331 5.47701 5.50236 5.61632 5.68439 6.26701 6.68766 6.75090 6.99497 7.32637 7.35913 8.82463 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.004888 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.818356 B = 5726.497778 C = 6049.398270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.028 3.972 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.303 1.303 6 H -0.249 1.249 7 C -0.475 4.475 8 H 0.047 0.953 9 C -0.043 4.043 10 C 0.162 3.838 11 N -0.701 5.701 12 C 0.505 3.495 13 O -0.598 6.598 14 C -0.093 4.093 15 C -0.094 4.094 16 C -0.109 4.109 17 C 0.101 3.899 18 O -0.586 6.586 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.147 4.147 22 C -0.194 4.194 23 H 0.264 0.736 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.411 0.589 27 H 0.115 0.885 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.388 0.612 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -13.271 9.925 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.186 1.186 5 H -0.231 1.231 6 H -0.173 1.173 7 C -0.513 4.513 8 H 0.066 0.934 9 C -0.044 4.044 10 C 0.037 3.963 11 N -0.350 5.350 12 C 0.293 3.707 13 O -0.480 6.480 14 C -0.114 4.114 15 C -0.132 4.132 16 C -0.146 4.146 17 C 0.043 3.957 18 O -0.394 6.394 19 C -0.179 4.179 20 C -0.142 4.142 21 C -0.184 4.184 22 C -0.232 4.232 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.247 0.753 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.982 -12.439 9.998 18.313 hybrid contribution -1.052 1.160 -0.185 1.576 sum 7.931 -11.280 9.813 16.924 Atomic orbital electron populations 1.70004 1.07924 1.27807 1.52508 1.25653 0.95075 1.02267 0.94023 0.86109 0.79652 0.79704 0.79381 1.18623 1.23093 1.17260 1.20348 0.88473 0.92897 1.49593 0.93440 1.19464 0.92954 1.04552 0.87411 1.20896 0.96901 0.87426 0.91052 1.45926 1.56734 1.21248 1.11087 1.21448 0.77104 0.90453 0.81739 1.90621 1.46437 1.40833 1.70108 1.21329 0.98220 0.94328 0.97552 1.21232 0.96011 0.99081 0.96884 1.21611 0.97056 0.97218 0.98712 1.21934 0.94910 0.89121 0.89773 1.86538 1.43975 1.52219 1.56686 1.22232 0.99238 0.97196 0.99228 1.21348 0.94692 0.99683 0.98498 1.22871 1.01468 0.92063 1.02040 1.23030 1.01772 0.96757 1.01662 0.92712 0.95086 0.92674 0.75334 0.86696 0.93296 0.92091 0.88040 0.90816 0.90184 0.76284 0.88836 0.90095 0.92334 0.93246 0.87712 0.89355 0.90284 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 13.96 21.45 0.30 -57.23 16 2 C 0.03 1.58 5.47 84.65 0.46 2.05 16 3 Si 0.93 44.98 24.89 68.60 1.71 46.69 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.25 -11.64 5.77 99.48 0.57 -11.06 16 7 C -0.48 -25.24 9.28 25.60 0.24 -25.00 16 8 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 9 C -0.04 -1.83 0.83 -52.93 -0.04 -1.87 16 10 C 0.16 6.82 5.18 86.38 0.45 7.27 16 11 N -0.70 -26.09 5.45 -463.06 -2.52 -28.61 16 12 C 0.50 18.64 6.82 87.66 0.60 19.24 16 13 O -0.60 -27.34 16.26 -3.04 -0.05 -27.39 16 14 C -0.09 -2.47 2.51 -11.54 -0.03 -2.50 16 15 C -0.09 -2.37 4.72 30.59 0.14 -2.22 16 16 C -0.11 -1.88 5.66 30.59 0.17 -1.71 16 17 C 0.10 1.63 3.77 30.59 0.12 1.75 16 18 O -0.59 -12.03 11.97 -148.98 -1.78 -13.81 16 19 C -0.14 -2.34 5.64 30.60 0.17 -2.16 16 20 C -0.10 -2.66 5.04 30.60 0.15 -2.50 16 21 C -0.15 -5.15 9.96 30.62 0.30 -4.84 16 22 C -0.19 -7.48 7.67 30.62 0.23 -7.25 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.03 1.52 6.45 -2.38 -0.02 1.50 16 25 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 26 H 0.41 13.78 8.44 -92.71 -0.78 13.00 16 27 H 0.12 2.34 8.13 -2.39 -0.02 2.32 16 28 H 0.05 1.57 7.40 -2.39 -0.02 1.56 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.39 4.97 9.08 -74.06 -0.67 4.30 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.51 7.68 -2.39 -0.02 1.49 16 38 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.08 3.24 7.36 -2.39 -0.02 3.22 16 41 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -71.93 325.48 0.06 -71.88 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.56 Total: 28.23 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 2.97 Total: -19.76 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.22 Total: -85.84 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.83 Total: -41.20 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.71 Total: 46.69 kcal Total: -71.93 0.06 -71.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435953593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.565 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds