Wall clock time and date at job start Mon Mar 30 2020 01:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48505 * 109.47313 * 270.38759 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.38939 * 3 2 1 6 6 H 1.48498 * 109.47184 * 150.38846 * 3 2 1 7 7 C 1.37879 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 356.64674 * 7 2 1 9 9 C 1.50710 * 119.99605 * 176.64356 * 7 2 1 10 10 C 1.53002 * 115.54706 * 89.19324 * 9 7 2 11 11 N 1.46497 * 109.47437 * 80.87273 * 10 9 7 12 12 C 1.34772 * 120.00074 * 184.87212 * 11 10 9 13 13 O 1.21279 * 120.00039 * 354.99981 * 12 11 10 14 14 C 1.50697 * 119.99974 * 174.99169 * 12 11 10 15 15 O 1.42899 * 109.47401 * 36.59037 * 14 12 11 16 16 C 1.53000 * 109.47488 * 276.58663 * 14 12 11 17 17 C 1.53004 * 109.47102 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47189 * 60.00449 * 17 16 14 19 19 C 1.53000 * 109.46732 * 299.99778 * 18 17 16 20 20 C 1.53001 * 109.47453 * 60.00259 * 19 18 17 21 21 C 1.53002 * 117.49374 * 234.85525 * 9 7 2 22 22 C 1.53002 * 60.02820 * 107.50564 * 21 9 7 23 23 H 0.96992 * 120.00217 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46751 * 200.87051 * 10 9 7 25 25 H 1.08996 * 109.47114 * 320.87032 * 10 9 7 26 26 H 0.97000 * 119.99731 * 4.87128 * 11 10 9 27 27 H 0.96705 * 113.99407 * 303.37813 * 15 14 12 28 28 H 1.09005 * 109.47163 * 300.00232 * 16 14 12 29 29 H 1.09002 * 109.46781 * 60.00172 * 16 14 12 30 30 H 1.08993 * 109.47131 * 299.99863 * 17 16 14 31 31 H 1.09008 * 109.46635 * 179.97438 * 17 16 14 32 32 H 1.08995 * 109.47520 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47671 * 59.99461 * 18 17 16 34 34 H 1.08996 * 109.47395 * 299.99900 * 19 18 17 35 35 H 1.09009 * 109.47092 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47207 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.47236 * 59.99677 * 20 19 18 38 38 H 1.08999 * 117.49209 * 215.00302 * 21 9 7 39 39 H 1.08990 * 117.50285 * 0.02562 * 21 9 7 40 40 H 1.09002 * 117.50099 * 107.49751 * 22 21 9 41 41 H 1.08997 * 117.49480 * 252.51908 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4884 2.0512 -1.4001 5 1 1.4506 2.6503 0.7083 6 1 3.5507 1.4379 0.6918 7 6 2.0046 -1.1941 -0.0005 8 1 1.4660 -2.1286 0.0538 9 6 3.5097 -1.1950 -0.0770 10 6 4.2387 -1.1362 1.2670 11 7 4.2808 -2.4757 1.8587 12 6 4.7900 -2.6508 3.0942 13 8 5.2956 -1.7168 3.6798 14 6 4.7309 -4.0072 3.7482 15 8 4.9287 -5.0212 2.7609 16 6 3.3630 -4.1968 4.4069 17 6 3.3029 -5.5742 5.0704 18 6 4.3991 -5.6769 6.1327 19 6 5.7670 -5.4874 5.4740 20 6 5.8272 -4.1100 4.8106 21 6 4.1595 -2.0084 -1.1982 22 6 4.1579 -0.4798 -1.2650 23 1 -0.4850 0.8400 0.0004 24 1 5.2555 -0.7748 1.1132 25 1 3.7099 -0.4591 1.9378 26 1 3.9423 -3.2365 1.3613 27 1 4.2995 -4.9839 2.0274 28 1 3.2122 -3.4234 5.1601 29 1 2.5821 -4.1241 3.6500 30 1 3.4535 -6.3472 4.3169 31 1 2.3285 -5.7090 5.5401 32 1 4.3560 -6.6579 6.6057 33 1 4.2485 -4.9038 6.8862 34 1 5.9177 -6.2604 4.7205 35 1 6.5481 -5.5610 6.2308 36 1 6.8018 -3.9748 4.3417 37 1 5.6765 -3.3368 5.5641 38 1 5.1064 -2.5015 -0.9783 39 1 3.4985 -2.5424 -1.8807 40 1 5.1037 0.0327 -1.0891 41 1 3.4955 -0.0086 -1.9910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435955048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:15 Heat of formation + Delta-G solvation = -82.708522 kcal Electronic energy + Delta-G solvation = -21370.991120 eV Core-core repulsion = 18250.700929 eV Total energy + Delta-G solvation = -3120.290190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40294 -38.04882 -36.96566 -35.35505 -33.41016 -32.16190 -30.84498 -30.06884 -26.97217 -25.35391 -23.17953 -22.70456 -21.81700 -20.16991 -19.68327 -19.37839 -17.84531 -16.45719 -16.08444 -15.78644 -15.09567 -14.76726 -14.45037 -14.40303 -14.17143 -13.49529 -13.44845 -12.96293 -12.80049 -12.54772 -12.39057 -12.26604 -12.08519 -11.82635 -11.38713 -11.19590 -10.92770 -10.90024 -10.69224 -10.55606 -10.54820 -10.24005 -10.02068 -9.76088 -9.27637 -9.17047 -8.67868 -8.61809 -8.47482 -6.20494 -4.25126 2.85585 3.24844 3.35288 3.39043 3.49061 4.21105 4.35559 4.58929 4.65302 4.71783 4.87281 5.07309 5.13230 5.14827 5.24544 5.38114 5.48160 5.56227 5.61996 5.73022 5.91904 5.96833 5.99140 5.99615 6.03509 6.14020 6.15443 6.17623 6.21069 6.35060 6.42360 6.43631 6.63576 6.91245 6.98153 7.04521 7.40912 7.62493 7.97284 8.36065 8.54664 8.79664 9.42388 10.90846 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027188 B = 0.005218 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.602569 B = 5364.609820 C = 5573.726549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.155 3.845 11 N -0.703 5.703 12 C 0.486 3.514 13 O -0.546 6.546 14 C 0.126 3.874 15 O -0.546 6.546 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.179 4.179 22 C -0.192 4.192 23 H 0.266 0.734 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.397 0.603 27 H 0.376 0.624 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -10.389 7.359 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.032 3.968 11 N -0.353 5.353 12 C 0.271 3.729 13 O -0.424 6.424 14 C 0.082 3.918 15 O -0.353 6.353 16 C -0.180 4.180 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.217 4.217 22 C -0.230 4.230 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.231 0.769 27 H 0.224 0.776 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.134 -9.743 8.175 15.658 hybrid contribution -0.370 0.945 -0.794 1.289 sum 8.763 -8.797 7.381 14.445 Atomic orbital electron populations 1.69881 1.06378 1.27328 1.49505 1.24971 0.94595 0.99142 0.93630 0.86842 0.80645 0.83302 0.78524 1.20297 1.21980 1.18321 1.20188 0.86100 0.94564 1.51965 0.90392 1.19666 0.95472 1.00943 0.85662 1.21291 0.97991 0.82437 0.95095 1.45953 1.61360 1.11552 1.16437 1.21306 0.78336 0.91182 0.82119 1.90665 1.44772 1.43191 1.63771 1.21449 0.97226 0.83991 0.89128 1.86585 1.59470 1.53246 1.35956 1.22157 0.95552 0.99011 1.01309 1.21430 0.98569 0.96633 0.98286 1.21563 0.94966 1.01434 0.97873 1.21477 0.96892 0.97242 0.99620 1.21336 0.97142 0.98188 0.96162 1.22836 1.00996 0.93273 1.04579 1.22976 1.01295 0.94882 1.03825 0.92420 0.93818 0.91208 0.76862 0.77578 0.90374 0.90603 0.91099 0.91786 0.92050 0.92092 0.91037 0.92025 0.91155 0.89732 0.90822 0.89255 0.90713 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.23 24.84 -169.99 -4.22 17.01 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.05 6.21 56.52 0.35 -5.70 16 7 C -0.49 -12.72 9.42 -34.43 -0.32 -13.05 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 9 C -0.02 -0.35 0.83 -155.62 -0.13 -0.48 16 10 C 0.15 3.22 4.91 -4.04 -0.02 3.20 16 11 N -0.70 -12.32 5.45 -60.30 -0.33 -12.65 16 12 C 0.49 8.53 6.72 -10.99 -0.07 8.46 16 13 O -0.55 -11.49 16.08 5.56 0.09 -11.40 16 14 C 0.13 1.73 0.93 -91.77 -0.09 1.64 16 15 O -0.55 -6.75 11.56 -35.23 -0.41 -7.16 16 16 C -0.14 -1.78 4.92 -26.73 -0.13 -1.92 16 17 C -0.11 -1.16 5.78 -26.73 -0.15 -1.31 16 18 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 19 C -0.11 -1.21 5.78 -26.73 -0.15 -1.36 16 20 C -0.09 -1.18 4.46 -26.73 -0.12 -1.30 16 21 C -0.18 -3.32 9.81 -26.73 -0.26 -3.58 16 22 C -0.19 -3.88 7.56 -26.70 -0.20 -4.08 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.04 0.89 7.94 -51.93 -0.41 0.48 16 25 H 0.07 1.63 7.48 -51.93 -0.39 1.24 16 26 H 0.40 6.02 6.79 -40.82 -0.28 5.74 16 27 H 0.38 3.71 7.46 45.56 0.34 4.05 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 41 H 0.09 1.94 7.16 -51.93 -0.37 1.57 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -30.49 322.61 -7.29 -37.79 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.15 Total: 9.98 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.91 Total: -13.01 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.44 Total: -38.07 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.32 Total: -18.56 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.22 Total: 17.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.49 -7.29 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.923 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds