Wall clock time and date at job start Mon Mar 30 2020 01:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99807 * 2 1 4 4 H 1.48505 * 109.47313 * 270.38759 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.38939 * 3 2 1 6 6 H 1.48498 * 109.47184 * 150.38846 * 3 2 1 7 7 C 1.37879 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00030 * 356.64674 * 7 2 1 9 9 C 1.50710 * 119.99605 * 176.64356 * 7 2 1 10 10 C 1.53002 * 115.54706 * 89.19324 * 9 7 2 11 11 N 1.46497 * 109.47437 * 80.87273 * 10 9 7 12 12 C 1.34772 * 120.00074 * 184.87212 * 11 10 9 13 13 O 1.21279 * 120.00039 * 354.99981 * 12 11 10 14 14 C 1.50697 * 119.99974 * 174.99169 * 12 11 10 15 15 O 1.42899 * 109.47401 * 36.59037 * 14 12 11 16 16 C 1.53000 * 109.47488 * 276.58663 * 14 12 11 17 17 C 1.53004 * 109.47102 * 179.97438 * 16 14 12 18 18 C 1.52997 * 109.47189 * 60.00449 * 17 16 14 19 19 C 1.53000 * 109.46732 * 299.99778 * 18 17 16 20 20 C 1.53001 * 109.47453 * 60.00259 * 19 18 17 21 21 C 1.53002 * 117.49374 * 234.85525 * 9 7 2 22 22 C 1.53002 * 60.02820 * 107.50564 * 21 9 7 23 23 H 0.96992 * 120.00217 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46751 * 200.87051 * 10 9 7 25 25 H 1.08996 * 109.47114 * 320.87032 * 10 9 7 26 26 H 0.97000 * 119.99731 * 4.87128 * 11 10 9 27 27 H 0.96705 * 113.99407 * 303.37813 * 15 14 12 28 28 H 1.09005 * 109.47163 * 300.00232 * 16 14 12 29 29 H 1.09002 * 109.46781 * 60.00172 * 16 14 12 30 30 H 1.08993 * 109.47131 * 299.99863 * 17 16 14 31 31 H 1.09008 * 109.46635 * 179.97438 * 17 16 14 32 32 H 1.08995 * 109.47520 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47671 * 59.99461 * 18 17 16 34 34 H 1.08996 * 109.47395 * 299.99900 * 19 18 17 35 35 H 1.09009 * 109.47092 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47207 * 179.97438 * 20 19 18 37 37 H 1.09005 * 109.47236 * 59.99677 * 20 19 18 38 38 H 1.08999 * 117.49209 * 215.00302 * 21 9 7 39 39 H 1.08990 * 117.50285 * 0.02562 * 21 9 7 40 40 H 1.09002 * 117.50099 * 107.49751 * 22 21 9 41 41 H 1.08997 * 117.49480 * 252.51908 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4884 2.0512 -1.4001 5 1 1.4506 2.6503 0.7083 6 1 3.5507 1.4379 0.6918 7 6 2.0046 -1.1941 -0.0005 8 1 1.4660 -2.1286 0.0538 9 6 3.5097 -1.1950 -0.0770 10 6 4.2387 -1.1362 1.2670 11 7 4.2808 -2.4757 1.8587 12 6 4.7900 -2.6508 3.0942 13 8 5.2956 -1.7168 3.6798 14 6 4.7309 -4.0072 3.7482 15 8 4.9287 -5.0212 2.7609 16 6 3.3630 -4.1968 4.4069 17 6 3.3029 -5.5742 5.0704 18 6 4.3991 -5.6769 6.1327 19 6 5.7670 -5.4874 5.4740 20 6 5.8272 -4.1100 4.8106 21 6 4.1595 -2.0084 -1.1982 22 6 4.1579 -0.4798 -1.2650 23 1 -0.4850 0.8400 0.0004 24 1 5.2555 -0.7748 1.1132 25 1 3.7099 -0.4591 1.9378 26 1 3.9423 -3.2365 1.3613 27 1 4.2995 -4.9839 2.0274 28 1 3.2122 -3.4234 5.1601 29 1 2.5821 -4.1241 3.6500 30 1 3.4535 -6.3472 4.3169 31 1 2.3285 -5.7090 5.5401 32 1 4.3560 -6.6579 6.6057 33 1 4.2485 -4.9038 6.8862 34 1 5.9177 -6.2604 4.7205 35 1 6.5481 -5.5610 6.2308 36 1 6.8018 -3.9748 4.3417 37 1 5.6765 -3.3368 5.5641 38 1 5.1064 -2.5015 -0.9783 39 1 3.4985 -2.5424 -1.8807 40 1 5.1037 0.0327 -1.0891 41 1 3.4955 -0.0086 -1.9910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435955048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:14 Heat of formation + Delta-G solvation = -104.662542 kcal Electronic energy + Delta-G solvation = -21371.943117 eV Core-core repulsion = 18250.700929 eV Total energy + Delta-G solvation = -3121.242188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65374 -39.40342 -38.50221 -36.36698 -34.91082 -34.20160 -31.78090 -31.10548 -28.63123 -27.22725 -24.33303 -23.65589 -23.36437 -21.40904 -21.08059 -20.73858 -19.28553 -18.18309 -17.22265 -17.19205 -16.86608 -16.03787 -15.88821 -15.57356 -15.34836 -14.99130 -14.74108 -14.49054 -14.29532 -13.94023 -13.72310 -13.31025 -13.21091 -13.11854 -13.03240 -12.72585 -12.37272 -12.20913 -11.99917 -11.90959 -11.68089 -11.61660 -11.39454 -11.00425 -10.97884 -10.71979 -10.61958 -10.22583 -10.04280 -8.32458 -6.38551 1.31461 1.37784 1.46386 1.48220 2.09437 2.33920 3.02736 3.15732 3.19297 3.52147 3.66027 3.75348 3.98496 4.20310 4.23805 4.26199 4.33063 4.39923 4.43461 4.47118 4.54560 4.63801 4.77340 4.84456 4.85561 5.00908 5.06856 5.08458 5.22533 5.25650 5.30345 5.31255 5.33756 5.40625 5.49452 5.58163 5.67176 6.25614 6.36620 6.66952 6.71176 7.14743 7.31864 8.82295 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027188 B = 0.005218 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.602569 B = 5364.609820 C = 5573.726549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.929 3.071 4 H -0.264 1.264 5 H -0.302 1.302 6 H -0.247 1.247 7 C -0.480 4.480 8 H 0.046 0.954 9 C -0.040 4.040 10 C 0.165 3.835 11 N -0.698 5.698 12 C 0.481 3.519 13 O -0.584 6.584 14 C 0.138 3.862 15 O -0.543 6.543 16 C -0.142 4.142 17 C -0.107 4.107 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.093 4.093 21 C -0.149 4.149 22 C -0.194 4.194 23 H 0.265 0.735 24 H 0.052 0.948 25 H 0.037 0.963 26 H 0.409 0.591 27 H 0.387 0.613 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.325 -11.778 7.407 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.172 4.172 3 Si 0.755 3.245 4 H -0.189 1.189 5 H -0.229 1.229 6 H -0.170 1.170 7 C -0.517 4.517 8 H 0.064 0.936 9 C -0.041 4.041 10 C 0.041 3.959 11 N -0.349 5.349 12 C 0.267 3.733 13 O -0.464 6.464 14 C 0.094 3.906 15 O -0.350 6.350 16 C -0.180 4.180 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.186 4.186 22 C -0.232 4.232 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.245 0.755 27 H 0.237 0.763 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.988 -11.171 8.196 17.683 hybrid contribution -0.962 1.302 -0.825 1.817 sum 10.026 -9.869 7.370 15.882 Atomic orbital electron populations 1.70007 1.08038 1.27938 1.52302 1.25699 0.95100 1.02406 0.93965 0.86023 0.79828 0.79554 0.79099 1.18907 1.22932 1.17008 1.20378 0.88623 0.92976 1.49751 0.93586 1.19459 0.93035 1.04654 0.86980 1.20942 0.97634 0.83449 0.93917 1.45879 1.61314 1.10911 1.16772 1.22121 0.77090 0.92430 0.81640 1.90640 1.46373 1.44861 1.64543 1.21327 0.98225 0.81881 0.89207 1.86581 1.60023 1.52209 1.36218 1.22169 0.94515 1.00349 1.00957 1.21431 0.99584 0.94897 0.98549 1.21584 0.94010 1.02599 0.97581 1.21452 0.98027 0.95237 0.99843 1.21369 0.96239 0.99665 0.95789 1.22872 1.01615 0.92489 1.01597 1.23046 1.01702 0.96353 1.02059 0.92614 0.92984 0.94482 0.75464 0.76252 0.91538 0.91173 0.90582 0.90683 0.90017 0.92136 0.91082 0.90459 0.92101 0.90752 0.87668 0.89231 0.88459 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 13.96 21.45 0.30 -56.59 16 2 C 0.03 1.48 5.47 84.65 0.46 1.94 16 3 Si 0.93 43.89 24.84 68.60 1.70 45.59 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.25 -11.04 6.21 99.48 0.62 -10.42 16 7 C -0.48 -25.10 9.42 25.60 0.24 -24.86 16 8 H 0.05 2.64 8.06 -2.91 -0.02 2.62 16 9 C -0.04 -1.67 0.83 -52.90 -0.04 -1.71 16 10 C 0.16 6.67 4.91 86.38 0.42 7.10 16 11 N -0.70 -23.79 5.45 -463.08 -2.52 -26.31 16 12 C 0.48 16.63 6.72 87.66 0.59 17.22 16 13 O -0.58 -24.65 16.08 -3.03 -0.05 -24.70 16 14 C 0.14 3.62 0.93 -11.54 -0.01 3.61 16 15 O -0.54 -12.23 11.56 -148.98 -1.72 -13.96 16 16 C -0.14 -3.42 4.92 30.60 0.15 -3.27 16 17 C -0.11 -1.98 5.78 30.59 0.18 -1.81 16 18 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 19 C -0.11 -2.02 5.78 30.59 0.18 -1.84 16 20 C -0.09 -2.30 4.46 30.60 0.14 -2.17 16 21 C -0.15 -5.04 9.81 30.60 0.30 -4.74 16 22 C -0.19 -7.31 7.56 30.62 0.23 -7.08 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 25 H 0.04 1.73 7.48 -2.39 -0.02 1.72 16 26 H 0.41 11.78 6.79 -92.71 -0.63 11.15 16 27 H 0.39 6.75 7.46 -74.05 -0.55 6.20 16 28 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.35 7.68 -2.39 -0.02 1.33 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.36 7.68 -2.39 -0.02 1.34 16 35 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.99 7.88 -2.38 -0.02 1.97 16 38 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.10 3.25 8.08 -2.39 -0.02 3.23 16 41 H 0.08 3.18 7.16 -2.39 -0.02 3.17 16 Total: -1.00 -66.63 322.61 0.48 -66.15 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -0.25 Total: 29.26 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 3.02 Total: -19.46 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.22 Total: -82.90 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.77 Total: -38.65 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.70 Total: 45.59 kcal Total: -66.63 0.48 -66.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.509 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds