Wall clock time and date at job start Mon Mar 30 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48501 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47020 * 300.00349 * 3 2 1 6 6 H 1.48504 * 109.47094 * 59.99990 * 3 2 1 7 7 C 1.37874 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00035 * 173.55938 * 7 2 1 9 9 C 1.50698 * 119.99900 * 353.55736 * 7 2 1 10 10 C 1.52996 * 115.55015 * 85.41420 * 9 7 2 11 11 N 1.46502 * 109.47457 * 65.13782 * 10 9 7 12 12 C 1.34774 * 120.00002 * 178.35723 * 11 10 9 13 13 O 1.21277 * 120.00288 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99651 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47076 * 179.97438 * 14 12 11 16 16 O 1.42905 * 110.01677 * 64.29740 * 15 14 12 17 17 C 1.54267 * 110.03335 * 302.90474 * 15 14 12 18 18 C 1.54962 * 104.16111 * 217.13405 * 17 15 14 19 19 C 1.54893 * 102.77609 * 37.88811 * 18 17 15 20 20 C 1.53874 * 110.03299 * 185.68894 * 15 14 12 21 21 C 1.52998 * 117.49937 * 231.07930 * 9 7 2 22 22 C 1.52998 * 117.49990 * 299.74345 * 9 7 2 23 23 H 0.96995 * 119.99875 * 5.05432 * 1 2 3 24 24 H 1.09006 * 109.47001 * 305.14236 * 10 9 7 25 25 H 1.09004 * 109.47372 * 185.14275 * 10 9 7 26 26 H 0.96998 * 119.99550 * 358.63533 * 11 10 9 27 27 H 1.08997 * 109.47284 * 299.99679 * 14 12 11 28 28 H 1.08996 * 109.47608 * 59.99863 * 14 12 11 29 29 H 0.96694 * 113.99760 * 300.70228 * 16 15 14 30 30 H 1.08999 * 110.48606 * 335.78302 * 17 15 14 31 31 H 1.09003 * 110.48122 * 98.42628 * 17 15 14 32 32 H 1.08996 * 110.72264 * 279.57556 * 18 17 15 33 33 H 1.09000 * 110.76087 * 156.22288 * 18 17 15 34 34 H 1.09000 * 110.48365 * 203.40196 * 19 18 17 35 35 H 1.09001 * 110.48500 * 80.76282 * 19 18 17 36 36 H 1.09008 * 110.03335 * 238.56872 * 20 15 14 37 37 H 1.09003 * 110.03505 * 359.97438 * 20 15 14 38 38 H 1.08999 * 117.50378 * 215.00138 * 21 9 7 39 39 H 1.09004 * 117.49759 * 0.02908 * 21 9 7 40 40 H 1.09002 * 117.49612 * 359.97308 * 22 9 7 41 41 H 1.08995 * 117.49934 * 144.97399 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1055 9 6 1.2582 -2.4950 0.1453 10 6 0.7025 -3.0860 -1.1519 11 7 1.8116 -3.4582 -2.0336 12 6 1.5605 -4.0332 -3.2264 13 8 0.4164 -4.2419 -3.5701 14 6 2.7016 -4.4166 -4.1331 15 6 2.1469 -5.0456 -5.4128 16 8 1.3830 -4.0816 -6.1403 17 6 1.2667 -6.2636 -5.0644 18 6 1.5646 -7.2820 -6.1937 19 6 3.0824 -7.0904 -6.4362 20 6 3.3007 -5.5708 -6.2849 21 6 1.7470 -3.4738 1.2149 22 6 0.4416 -2.7017 1.4225 23 1 -0.4850 0.8367 -0.0740 24 1 0.0758 -2.3456 -1.6492 25 1 0.1078 -3.9703 -0.9228 26 1 2.7269 -3.2946 -1.7571 27 1 3.2795 -3.5276 -4.3857 28 1 3.3442 -5.1352 -3.6245 29 1 0.6337 -3.7204 -5.6473 30 1 1.5504 -6.6747 -4.0956 31 1 0.2126 -5.9860 -5.0683 32 1 0.9964 -7.0394 -7.0916 33 1 1.3515 -8.2987 -5.8633 34 1 3.3524 -7.4165 -7.4406 35 1 3.6598 -7.6350 -5.6891 36 1 3.2775 -5.0910 -7.2634 37 1 4.2559 -5.3772 -5.7967 38 1 1.6726 -4.5387 0.9945 39 1 2.6082 -3.1764 1.8134 40 1 0.4446 -1.8967 2.1575 41 1 -0.4917 -3.2583 1.3386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435965320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:13 Heat of formation + Delta-G solvation = -87.453753 kcal Electronic energy + Delta-G solvation = -20948.798018 eV Core-core repulsion = 17828.302059 eV Total energy + Delta-G solvation = -3120.495959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02669 -38.10419 -36.63894 -34.63420 -33.34583 -32.01969 -30.75175 -28.73783 -26.81726 -25.59024 -24.47424 -21.26409 -20.95301 -19.99194 -19.69862 -19.25224 -16.93843 -16.29476 -16.13184 -15.53766 -15.29259 -14.92622 -14.68890 -14.48668 -13.78172 -13.49591 -13.23141 -12.75360 -12.67673 -12.43174 -11.99802 -11.70170 -11.61286 -11.33784 -11.17744 -11.05578 -10.99386 -10.93878 -10.66282 -10.56050 -10.51393 -10.32109 -9.72341 -9.67526 -9.28404 -9.01576 -8.54873 -8.33483 -8.13926 -6.12384 -4.21365 3.11613 3.22206 3.31576 3.33283 3.79028 4.31376 4.32564 4.57788 4.69651 4.87767 5.13324 5.15078 5.18746 5.34775 5.36756 5.49214 5.56911 5.63124 5.75420 5.83137 5.84879 5.97565 6.03972 6.05487 6.14962 6.28120 6.32653 6.41296 6.46220 6.51412 6.63973 6.83063 7.04350 7.21121 7.37726 7.43276 7.77128 7.96753 8.21863 8.28893 8.78091 8.81482 9.46032 10.95454 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026327 B = 0.004556 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.288882 B = 6144.646743 C = 6604.853576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.026 3.974 10 C 0.163 3.837 11 N -0.700 5.700 12 C 0.505 3.495 13 O -0.561 6.561 14 C -0.170 4.170 15 C 0.150 3.850 16 O -0.564 6.564 17 C -0.137 4.137 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.211 4.211 22 C -0.148 4.148 23 H 0.262 0.738 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.401 0.599 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.387 0.613 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -11.167 -8.350 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.040 3.960 11 N -0.348 5.348 12 C 0.291 3.709 13 O -0.442 6.442 14 C -0.211 4.211 15 C 0.108 3.892 16 O -0.374 6.374 17 C -0.175 4.175 18 C -0.163 4.163 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.248 4.248 22 C -0.186 4.186 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.234 0.766 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.238 0.762 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.483 -11.283 -8.944 15.406 hybrid contribution 0.446 1.264 0.782 1.552 sum 5.929 -10.018 -8.162 14.217 Atomic orbital electron populations 1.69981 1.05910 1.26890 1.48207 1.24987 0.94802 0.98988 0.94230 0.86578 0.80175 0.83807 0.77692 1.19705 1.20992 1.20910 1.20370 0.92851 0.88581 1.52070 0.92152 1.19051 0.98632 0.93974 0.85777 1.21004 0.87343 0.96903 0.90797 1.46019 1.11520 1.59557 1.17672 1.20496 0.90268 0.77877 0.82276 1.90586 1.22933 1.56159 1.74531 1.22546 0.98430 1.03353 0.96744 1.21452 0.90881 0.88049 0.88787 1.86377 1.46347 1.59360 1.45295 1.23018 1.01546 0.95062 0.97893 1.22528 0.95760 0.98918 0.99138 1.22353 0.96831 0.95524 1.01372 1.22172 0.96695 0.95574 1.00726 1.23025 0.98716 0.95612 1.07454 1.22490 0.92244 1.01074 1.02771 0.92848 0.90896 0.94499 0.76561 0.88384 0.88505 0.76187 0.91588 0.89767 0.91441 0.91863 0.91651 0.91618 0.90407 0.90892 0.91693 0.90339 0.89807 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 12.91 55.43 0.72 -23.26 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.34 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -12.65 8.63 -34.44 -0.30 -12.95 16 8 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 9 C 0.03 0.61 1.38 -155.66 -0.21 0.39 16 10 C 0.16 3.57 5.50 -4.04 -0.02 3.55 16 11 N -0.70 -12.92 5.47 -60.29 -0.33 -13.25 16 12 C 0.50 8.71 7.30 -10.99 -0.08 8.63 16 13 O -0.56 -11.08 12.51 -9.15 -0.11 -11.19 16 14 C -0.17 -2.25 4.63 -27.88 -0.13 -2.38 16 15 C 0.15 2.00 0.98 -89.50 -0.09 1.91 16 16 O -0.56 -8.83 12.89 -49.94 -0.64 -9.48 16 17 C -0.14 -1.83 4.65 -25.03 -0.12 -1.94 16 18 C -0.13 -1.37 6.91 -24.70 -0.17 -1.54 16 19 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 20 C -0.11 -1.25 6.27 -25.62 -0.16 -1.41 16 21 C -0.21 -4.28 9.96 -26.69 -0.27 -4.54 16 22 C -0.15 -3.32 9.42 -26.69 -0.25 -3.57 16 23 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 24 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 25 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 26 H 0.40 6.79 8.37 -40.82 -0.34 6.45 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.39 6.27 6.96 45.56 0.32 6.58 16 30 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 31 H 0.08 1.29 7.17 -51.93 -0.37 0.92 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.89 7.96 -51.92 -0.41 0.48 16 37 H 0.07 0.68 7.67 -51.93 -0.40 0.29 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -28.11 332.20 -8.68 -36.79 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.23 Total: 13.42 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.06 Total: -13.36 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.39 Total: -36.51 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.76 Total: -20.67 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.11 -8.68 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435965320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.664 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds