Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48501 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47020 * 300.00349 * 3 2 1 6 6 H 1.48504 * 109.47094 * 59.99990 * 3 2 1 7 7 C 1.37874 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00035 * 173.55938 * 7 2 1 9 9 C 1.50698 * 119.99900 * 353.55736 * 7 2 1 10 10 C 1.52996 * 115.55015 * 85.41420 * 9 7 2 11 11 N 1.46502 * 109.47457 * 65.13782 * 10 9 7 12 12 C 1.34774 * 120.00002 * 178.35723 * 11 10 9 13 13 O 1.21277 * 120.00288 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99651 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47076 * 179.97438 * 14 12 11 16 16 O 1.42905 * 110.01677 * 64.29740 * 15 14 12 17 17 C 1.54267 * 110.03335 * 302.90474 * 15 14 12 18 18 C 1.54962 * 104.16111 * 217.13405 * 17 15 14 19 19 C 1.54893 * 102.77609 * 37.88811 * 18 17 15 20 20 C 1.53874 * 110.03299 * 185.68894 * 15 14 12 21 21 C 1.52998 * 117.49937 * 231.07930 * 9 7 2 22 22 C 1.52998 * 117.49990 * 299.74345 * 9 7 2 23 23 H 0.96995 * 119.99875 * 5.05432 * 1 2 3 24 24 H 1.09006 * 109.47001 * 305.14236 * 10 9 7 25 25 H 1.09004 * 109.47372 * 185.14275 * 10 9 7 26 26 H 0.96998 * 119.99550 * 358.63533 * 11 10 9 27 27 H 1.08997 * 109.47284 * 299.99679 * 14 12 11 28 28 H 1.08996 * 109.47608 * 59.99863 * 14 12 11 29 29 H 0.96694 * 113.99760 * 300.70228 * 16 15 14 30 30 H 1.08999 * 110.48606 * 335.78302 * 17 15 14 31 31 H 1.09003 * 110.48122 * 98.42628 * 17 15 14 32 32 H 1.08996 * 110.72264 * 279.57556 * 18 17 15 33 33 H 1.09000 * 110.76087 * 156.22288 * 18 17 15 34 34 H 1.09000 * 110.48365 * 203.40196 * 19 18 17 35 35 H 1.09001 * 110.48500 * 80.76282 * 19 18 17 36 36 H 1.09008 * 110.03335 * 238.56872 * 20 15 14 37 37 H 1.09003 * 110.03505 * 359.97438 * 20 15 14 38 38 H 1.08999 * 117.50378 * 215.00138 * 21 9 7 39 39 H 1.09004 * 117.49759 * 0.02908 * 21 9 7 40 40 H 1.09002 * 117.49612 * 359.97308 * 22 9 7 41 41 H 1.08995 * 117.49934 * 144.97399 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 -0.1055 9 6 1.2582 -2.4950 0.1453 10 6 0.7025 -3.0860 -1.1519 11 7 1.8116 -3.4582 -2.0336 12 6 1.5605 -4.0332 -3.2264 13 8 0.4164 -4.2419 -3.5701 14 6 2.7016 -4.4166 -4.1331 15 6 2.1469 -5.0456 -5.4128 16 8 1.3830 -4.0816 -6.1403 17 6 1.2667 -6.2636 -5.0644 18 6 1.5646 -7.2820 -6.1937 19 6 3.0824 -7.0904 -6.4362 20 6 3.3007 -5.5708 -6.2849 21 6 1.7470 -3.4738 1.2149 22 6 0.4416 -2.7017 1.4225 23 1 -0.4850 0.8367 -0.0740 24 1 0.0758 -2.3456 -1.6492 25 1 0.1078 -3.9703 -0.9228 26 1 2.7269 -3.2946 -1.7571 27 1 3.2795 -3.5276 -4.3857 28 1 3.3442 -5.1352 -3.6245 29 1 0.6337 -3.7204 -5.6473 30 1 1.5504 -6.6747 -4.0956 31 1 0.2126 -5.9860 -5.0683 32 1 0.9964 -7.0394 -7.0916 33 1 1.3515 -8.2987 -5.8633 34 1 3.3524 -7.4165 -7.4406 35 1 3.6598 -7.6350 -5.6891 36 1 3.2775 -5.0910 -7.2634 37 1 4.2559 -5.3772 -5.7967 38 1 1.6726 -4.5387 0.9945 39 1 2.6082 -3.1764 1.8134 40 1 0.4446 -1.8967 2.1575 41 1 -0.4917 -3.2583 1.3386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435965320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = -105.033419 kcal Electronic energy + Delta-G solvation = -20949.560330 eV Core-core repulsion = 17828.302059 eV Total energy + Delta-G solvation = -3121.258271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27872 -39.41070 -38.28953 -35.70525 -34.90824 -33.97836 -31.89104 -29.64564 -28.33085 -27.36683 -25.81250 -22.98498 -21.88669 -21.40363 -21.15430 -20.59871 -18.45250 -17.74093 -17.47945 -16.78320 -16.68233 -16.43621 -16.14620 -15.87541 -15.36846 -14.78008 -14.41416 -14.20307 -14.08456 -13.55922 -13.50864 -13.37817 -12.95145 -12.89090 -12.80488 -12.34257 -12.32974 -12.05731 -11.99320 -11.94594 -11.57762 -11.47741 -11.41421 -10.86453 -10.79765 -10.75823 -10.46770 -10.03850 -9.80959 -8.11060 -6.24091 1.40405 1.44591 1.53343 1.73748 2.37371 2.43497 3.17702 3.28845 3.47917 3.62128 3.72613 3.87952 4.11630 4.25591 4.29511 4.38576 4.54562 4.56875 4.59861 4.64785 4.72143 4.74706 4.85894 4.93799 4.98411 5.02041 5.07459 5.10841 5.18813 5.23763 5.26560 5.43678 5.50803 5.58180 5.60420 5.68900 5.77794 6.35770 6.74321 6.77364 6.84504 7.40032 7.45967 8.96611 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026327 B = 0.004556 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.288882 B = 6144.646743 C = 6604.853576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.004 3.996 10 C 0.180 3.820 11 N -0.699 5.699 12 C 0.501 3.499 13 O -0.589 6.589 14 C -0.160 4.160 15 C 0.139 3.861 16 O -0.578 6.578 17 C -0.139 4.139 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.175 4.175 22 C -0.161 4.161 23 H 0.258 0.742 24 H 0.028 0.972 25 H 0.035 0.965 26 H 0.410 0.590 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.379 0.621 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -12.528 -8.719 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.003 3.997 10 C 0.056 3.944 11 N -0.348 5.348 12 C 0.289 3.711 13 O -0.472 6.472 14 C -0.200 4.200 15 C 0.098 3.902 16 O -0.387 6.387 17 C -0.177 4.177 18 C -0.162 4.162 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.212 4.212 22 C -0.200 4.200 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.245 0.755 27 H 0.128 0.872 28 H 0.148 0.852 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.214 -12.660 -9.320 17.737 hybrid contribution -0.429 1.646 0.890 1.920 sum 7.785 -11.014 -8.431 15.906 Atomic orbital electron populations 1.70107 1.07296 1.27240 1.49961 1.25692 0.95417 1.02053 0.94407 0.85660 0.79591 0.80204 0.77091 1.18424 1.21464 1.21177 1.20690 0.93146 0.89534 1.50681 0.91749 1.19090 0.99633 0.94524 0.86434 1.20517 0.87892 0.95399 0.90614 1.45911 1.10992 1.59986 1.17867 1.21274 0.91080 0.76721 0.81976 1.90588 1.24690 1.56971 1.74937 1.22577 0.96954 1.04661 0.95758 1.21790 0.91513 0.87532 0.89355 1.86375 1.46308 1.60040 1.45981 1.22969 0.99770 0.95972 0.98941 1.22527 0.97063 0.98824 0.97793 1.22365 0.95555 0.94616 1.02888 1.22221 0.96424 0.96336 0.99956 1.23008 0.97282 0.96265 1.04657 1.22427 0.93794 1.01438 1.02303 0.93269 0.95349 0.94693 0.75452 0.87199 0.85177 0.77039 0.91545 0.92790 0.92284 0.90546 0.90170 0.89879 0.91127 0.88611 0.89235 0.89541 0.91944 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.06 12.91 21.45 0.28 -50.78 16 2 C 0.02 1.31 5.39 84.65 0.46 1.76 16 3 Si 0.95 41.80 29.55 68.60 2.03 43.82 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.50 -25.14 8.63 25.60 0.22 -24.92 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.18 1.38 -52.93 -0.07 0.10 16 10 C 0.18 8.01 5.50 86.38 0.48 8.48 16 11 N -0.70 -25.19 5.47 -463.06 -2.53 -27.72 16 12 C 0.50 16.94 7.30 87.66 0.64 17.58 16 13 O -0.59 -23.72 12.51 11.05 0.14 -23.58 16 14 C -0.16 -3.84 4.63 29.85 0.14 -3.70 16 15 C 0.14 3.50 0.98 -10.07 -0.01 3.49 16 16 O -0.58 -18.08 12.89 -134.91 -1.74 -19.82 16 17 C -0.14 -3.56 4.65 31.69 0.15 -3.42 16 18 C -0.12 -2.48 6.91 31.91 0.22 -2.26 16 19 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 20 C -0.11 -2.11 6.27 31.32 0.20 -1.92 16 21 C -0.18 -6.73 9.96 30.62 0.30 -6.43 16 22 C -0.16 -7.24 9.42 30.62 0.29 -6.95 16 23 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 24 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.03 1.54 8.09 -2.38 -0.02 1.52 16 26 H 0.41 13.12 8.37 -92.71 -0.78 12.34 16 27 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.38 12.77 6.96 -74.06 -0.52 12.26 16 30 H 0.07 1.67 7.79 -2.39 -0.02 1.65 16 31 H 0.05 1.70 7.17 -2.39 -0.02 1.68 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.45 7.96 -2.38 -0.02 1.44 16 37 H 0.10 1.38 7.67 -2.39 -0.02 1.36 16 38 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -61.59 332.20 1.12 -60.48 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.27 Total: 37.41 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.22 Total: -19.80 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.26 Total: -78.50 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.60 Total: -43.41 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -61.59 1.12 -60.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435965320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.557 kcal (2) G-P(sol) polarization free energy of solvation -61.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds