Wall clock time and date at job start Mon Mar 30 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47172 * 270.00558 * 3 2 1 5 5 H 1.48501 * 109.46875 * 30.00313 * 3 2 1 6 6 H 1.48494 * 109.46991 * 149.99939 * 3 2 1 7 7 C 1.37872 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47013 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.47049 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21287 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.50691 * 120.00235 * 179.97438 * 12 11 10 15 15 H 1.08997 * 109.47981 * 300.01904 * 14 12 11 16 16 C 1.52655 * 109.48042 * 179.97438 * 14 12 11 17 17 C 1.54041 * 110.39638 * 166.48018 * 16 14 12 18 18 C 1.52468 * 111.03744 * 315.22014 * 17 16 14 19 19 C 1.54103 * 109.30162 * 114.21646 * 18 17 16 20 20 C 1.52045 * 109.16397 * 281.97787 * 19 18 17 21 21 C 1.51109 * 109.11353 * 72.61140 * 20 19 18 22 22 O 1.20763 * 120.41996 * 68.82011 * 21 20 19 23 23 C 1.49499 * 119.15695 * 249.10152 * 21 20 19 24 24 H 0.96999 * 120.00270 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47367 * 60.00608 * 9 7 2 26 26 H 1.09003 * 109.47438 * 300.00295 * 9 7 2 27 27 H 1.09002 * 109.47350 * 60.00690 * 10 9 7 28 28 H 1.08998 * 109.47362 * 299.99621 * 10 9 7 29 29 H 0.96995 * 119.99927 * 359.97438 * 11 10 9 30 30 H 1.09004 * 109.31426 * 46.20263 * 16 14 12 31 31 H 1.08993 * 109.17096 * 286.66766 * 16 14 12 32 32 H 1.08993 * 109.16966 * 194.82094 * 17 16 14 33 33 H 1.08997 * 109.16707 * 75.61706 * 17 16 14 34 34 H 1.08994 * 109.50271 * 354.26629 * 18 17 16 35 35 H 1.09004 * 109.52531 * 234.17943 * 18 17 16 36 36 H 1.08998 * 109.52155 * 162.06531 * 19 18 17 37 37 H 1.08999 * 109.51822 * 41.88558 * 19 18 17 38 38 H 1.08994 * 109.53376 * 312.72098 * 20 19 18 39 39 H 1.08999 * 109.58862 * 192.53352 * 20 19 18 40 40 H 1.09007 * 109.79638 * 162.33164 * 23 21 20 41 41 H 1.09001 * 109.80099 * 283.19029 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4030 -0.0008 15 1 0.8062 -7.4606 0.8887 16 6 2.4253 -8.5634 -0.0009 17 6 1.7070 -9.8837 0.3366 18 6 0.7546 -9.7033 1.5135 19 6 -0.6953 -9.9009 1.0303 20 6 -1.1581 -8.6431 0.3124 21 6 -0.4673 -8.5564 -1.0288 22 8 -0.7337 -9.3427 -1.9058 23 6 0.5547 -7.4888 -1.2540 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8895 28 1 2.8720 -3.6042 -0.8905 29 1 0.5430 -4.9308 -0.0011 30 1 3.2008 -8.3749 0.7416 31 1 2.8822 -8.6436 -0.9872 32 1 2.4494 -10.6404 0.5899 33 1 1.1412 -10.2159 -0.5338 34 1 0.8680 -8.6995 1.9228 35 1 0.9847 -10.4387 2.2844 36 1 -1.3421 -10.0903 1.8870 37 1 -0.7388 -10.7480 0.3458 38 1 -0.9041 -7.7679 0.9103 39 1 -2.2372 -8.6828 0.1644 40 1 1.1688 -7.7420 -2.1183 41 1 0.0591 -6.5322 -1.4199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487020380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:45 Heat of formation + Delta-G solvation = -105.432086 kcal Electronic energy + Delta-G solvation = -20700.947026 eV Core-core repulsion = 17579.671468 eV Total energy + Delta-G solvation = -3121.275558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83783 -39.15602 -36.86177 -34.94686 -33.70043 -32.86747 -31.78181 -29.63770 -26.76806 -26.33904 -24.58898 -22.60172 -21.27811 -20.71402 -19.91301 -19.04223 -17.41405 -16.48595 -16.38077 -15.74180 -15.40757 -14.98652 -14.77463 -14.55440 -14.48021 -14.02790 -13.99768 -13.53585 -13.06524 -12.60202 -12.49878 -12.32320 -12.27379 -11.87452 -11.63763 -11.29882 -11.22920 -11.06299 -10.99239 -10.68222 -10.55726 -10.48915 -10.37207 -9.98106 -9.69438 -9.43201 -9.16124 -8.59334 -8.40052 -6.12797 -4.15749 1.74513 2.90341 3.27356 3.33628 3.37147 3.54638 3.88702 4.38240 4.40554 4.47793 4.55283 4.62789 4.75529 4.83656 4.92121 5.10827 5.18199 5.24533 5.26164 5.37748 5.43809 5.57033 5.60325 5.67235 5.72708 5.84925 5.89350 6.00153 6.14395 6.21099 6.30012 6.30101 6.68959 6.85020 7.29367 7.46894 7.56785 7.85080 7.93829 8.23783 8.57698 8.90191 9.49492 10.98757 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031405 B = 0.003680 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.360104 B = 7606.336500 C = 7990.636190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.722 5.722 12 C 0.509 3.491 13 O -0.546 6.546 14 C -0.114 4.114 15 H 0.113 0.887 16 C -0.104 4.104 17 C -0.131 4.131 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.178 4.178 21 C 0.373 3.627 22 O -0.461 6.461 23 C -0.168 4.168 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.396 0.604 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -18.932 2.543 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.294 3.706 13 O -0.424 6.424 14 C -0.135 4.135 15 H 0.131 0.869 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.171 4.171 19 C -0.149 4.149 20 C -0.215 4.215 21 C 0.249 3.751 22 O -0.335 6.335 23 C -0.206 4.206 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.230 0.770 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.143 -19.201 2.079 19.432 hybrid contribution -0.102 1.168 0.024 1.173 sum -2.245 -18.033 2.103 18.293 Atomic orbital electron populations 1.69945 1.06093 1.26915 1.50340 1.24985 0.94884 0.99405 0.94929 0.86519 0.79857 0.83002 0.78230 1.20544 1.21149 1.19715 1.21047 0.93253 0.90395 1.51429 0.92261 1.19324 0.94192 0.91155 0.97823 1.21743 0.96068 0.81495 1.00844 1.46358 1.10449 1.06639 1.73743 1.20407 0.88166 0.85307 0.76713 1.90680 1.13956 1.87677 1.50047 1.21603 0.98147 0.94262 0.99512 0.86910 1.21610 0.97283 0.91755 1.03541 1.21878 0.98902 0.97727 0.98353 1.21979 0.94058 1.02884 0.98156 1.21628 0.96658 0.96440 1.00210 1.22186 1.02085 1.01025 0.96234 1.24314 0.80083 0.82371 0.88331 1.90411 1.59378 1.38410 1.45305 1.22191 0.98046 1.00884 0.99484 0.92821 0.95954 0.95936 0.92510 0.92532 0.77010 0.90212 0.91122 0.91367 0.91837 0.90607 0.91382 0.90722 0.91018 0.88906 0.88636 0.88213 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.22 9.11 -34.45 -0.31 -14.53 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 11 N -0.72 -11.57 5.32 -60.29 -0.32 -11.89 16 12 C 0.51 7.86 7.14 -10.99 -0.08 7.78 16 13 O -0.55 -10.61 15.72 5.55 0.09 -10.53 16 14 C -0.11 -1.24 2.07 -91.80 -0.19 -1.43 16 15 H 0.11 1.00 3.44 -51.93 -0.18 0.82 16 16 C -0.10 -1.13 4.53 -26.36 -0.12 -1.25 16 17 C -0.13 -1.16 5.37 -26.46 -0.14 -1.30 16 18 C -0.13 -1.00 5.51 -26.43 -0.15 -1.14 16 19 C -0.11 -0.80 5.63 -26.64 -0.15 -0.95 16 20 C -0.18 -1.36 5.45 -28.17 -0.15 -1.51 16 21 C 0.37 3.84 4.17 -29.41 -0.12 3.71 16 22 O -0.46 -6.23 17.42 6.00 0.10 -6.13 16 23 C -0.17 -1.73 5.22 -28.31 -0.15 -1.88 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.40 5.32 7.84 -40.82 -0.32 5.00 16 30 H 0.08 0.96 7.59 -51.93 -0.39 0.56 16 31 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 5.66 -51.93 -0.29 0.33 16 34 H 0.08 0.57 5.52 -51.93 -0.29 0.28 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.59 7.56 -51.93 -0.39 0.19 16 38 H 0.09 0.59 6.16 -51.93 -0.32 0.27 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.10 7.82 -51.93 -0.41 0.70 16 41 H 0.11 1.04 7.23 -51.93 -0.38 0.66 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -32.04 320.82 -7.70 -39.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.30 Total: 1.19 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.83 Total: -8.35 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.42 Total: -36.82 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.19 Total: -16.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.04 -7.70 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487020380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.693 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds