Wall clock time and date at job start Mon Mar 30 2020 01:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47172 * 270.00558 * 3 2 1 5 5 H 1.48501 * 109.46875 * 30.00313 * 3 2 1 6 6 H 1.48494 * 109.46991 * 149.99939 * 3 2 1 7 7 C 1.37872 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47013 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.47049 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21287 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.50691 * 120.00235 * 179.97438 * 12 11 10 15 15 H 1.08997 * 109.47981 * 300.01904 * 14 12 11 16 16 C 1.52655 * 109.48042 * 179.97438 * 14 12 11 17 17 C 1.54041 * 110.39638 * 166.48018 * 16 14 12 18 18 C 1.52468 * 111.03744 * 315.22014 * 17 16 14 19 19 C 1.54103 * 109.30162 * 114.21646 * 18 17 16 20 20 C 1.52045 * 109.16397 * 281.97787 * 19 18 17 21 21 C 1.51109 * 109.11353 * 72.61140 * 20 19 18 22 22 O 1.20763 * 120.41996 * 68.82011 * 21 20 19 23 23 C 1.49499 * 119.15695 * 249.10152 * 21 20 19 24 24 H 0.96999 * 120.00270 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47367 * 60.00608 * 9 7 2 26 26 H 1.09003 * 109.47438 * 300.00295 * 9 7 2 27 27 H 1.09002 * 109.47350 * 60.00690 * 10 9 7 28 28 H 1.08998 * 109.47362 * 299.99621 * 10 9 7 29 29 H 0.96995 * 119.99927 * 359.97438 * 11 10 9 30 30 H 1.09004 * 109.31426 * 46.20263 * 16 14 12 31 31 H 1.08993 * 109.17096 * 286.66766 * 16 14 12 32 32 H 1.08993 * 109.16966 * 194.82094 * 17 16 14 33 33 H 1.08997 * 109.16707 * 75.61706 * 17 16 14 34 34 H 1.08994 * 109.50271 * 354.26629 * 18 17 16 35 35 H 1.09004 * 109.52531 * 234.17943 * 18 17 16 36 36 H 1.08998 * 109.52155 * 162.06531 * 19 18 17 37 37 H 1.08999 * 109.51822 * 41.88558 * 19 18 17 38 38 H 1.08994 * 109.53376 * 312.72098 * 20 19 18 39 39 H 1.08999 * 109.58862 * 192.53352 * 20 19 18 40 40 H 1.09007 * 109.79638 * 162.33164 * 23 21 20 41 41 H 1.09001 * 109.80099 * 283.19029 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4030 -0.0008 15 1 0.8062 -7.4606 0.8887 16 6 2.4253 -8.5634 -0.0009 17 6 1.7070 -9.8837 0.3366 18 6 0.7546 -9.7033 1.5135 19 6 -0.6953 -9.9009 1.0303 20 6 -1.1581 -8.6431 0.3124 21 6 -0.4673 -8.5564 -1.0288 22 8 -0.7337 -9.3427 -1.9058 23 6 0.5547 -7.4888 -1.2540 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8895 28 1 2.8720 -3.6042 -0.8905 29 1 0.5430 -4.9308 -0.0011 30 1 3.2008 -8.3749 0.7416 31 1 2.8822 -8.6436 -0.9872 32 1 2.4494 -10.6404 0.5899 33 1 1.1412 -10.2159 -0.5338 34 1 0.8680 -8.6995 1.9228 35 1 0.9847 -10.4387 2.2844 36 1 -1.3421 -10.0903 1.8870 37 1 -0.7388 -10.7480 0.3458 38 1 -0.9041 -7.7679 0.9103 39 1 -2.2372 -8.6828 0.1644 40 1 1.1688 -7.7420 -2.1183 41 1 0.0591 -6.5322 -1.4199 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487020380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:44 Heat of formation + Delta-G solvation = -125.706170 kcal Electronic energy + Delta-G solvation = -20701.826176 eV Core-core repulsion = 17579.671468 eV Total energy + Delta-G solvation = -3122.154708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79084 -40.35593 -37.75864 -36.57635 -34.89662 -34.41653 -32.62865 -31.38903 -27.67626 -27.41765 -26.17824 -23.53544 -22.81671 -21.88853 -20.88096 -19.92280 -18.66154 -18.33045 -17.30919 -16.95954 -16.51493 -16.32042 -16.06753 -16.02920 -15.44675 -14.92678 -14.84201 -14.70290 -14.54498 -14.29208 -13.47049 -13.30507 -13.17424 -13.11961 -12.93067 -12.68577 -12.54650 -12.39079 -12.21045 -11.99471 -11.72743 -11.62876 -11.45180 -11.31101 -11.22846 -10.92229 -10.59286 -10.37772 -9.99636 -8.23342 -6.33200 0.91505 1.42481 1.42893 1.53985 1.64111 2.23528 2.45393 3.08739 3.11864 3.59821 3.63203 3.72704 3.86705 4.00197 4.08316 4.18688 4.23903 4.46201 4.50171 4.54041 4.54919 4.58157 4.75423 4.86640 4.88088 4.90258 4.94131 5.12511 5.16583 5.22432 5.28426 5.33555 5.34819 5.50347 5.51399 5.60941 5.80420 6.18010 6.49111 6.63555 6.80154 7.28700 7.36228 8.88242 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031405 B = 0.003680 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.360104 B = 7606.336500 C = 7990.636190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.586 6.586 14 C -0.098 4.098 15 H 0.142 0.858 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.177 4.177 21 C 0.380 3.620 22 O -0.497 6.497 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.411 0.589 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 -19.323 3.603 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.366 5.366 12 C 0.298 3.702 13 O -0.467 6.467 14 C -0.118 4.118 15 H 0.159 0.841 16 C -0.141 4.141 17 C -0.162 4.162 18 C -0.170 4.170 19 C -0.147 4.147 20 C -0.215 4.215 21 C 0.258 3.742 22 O -0.373 6.373 23 C -0.207 4.207 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.248 0.752 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.773 -19.607 3.145 20.050 hybrid contribution 0.105 1.263 -0.323 1.308 sum -2.668 -18.344 2.822 18.750 Atomic orbital electron populations 1.70039 1.07432 1.27952 1.51030 1.25809 0.95750 1.02892 0.94456 0.85504 0.78706 0.78755 0.78447 1.19938 1.20514 1.19123 1.21477 0.93548 0.92081 1.51487 0.92489 1.19136 0.94226 0.91612 0.96528 1.21223 0.95068 0.82399 0.99761 1.46149 1.11123 1.05511 1.73834 1.21137 0.87827 0.86206 0.75064 1.90667 1.16020 1.88283 1.51681 1.21554 0.97975 0.91260 1.01057 0.84050 1.21595 0.97205 0.92849 1.02478 1.21834 0.99199 0.96460 0.98736 1.22005 0.93783 1.03570 0.97669 1.21632 0.96782 0.95610 1.00630 1.22275 1.02530 1.02149 0.94504 1.24600 0.79426 0.81125 0.89041 1.90410 1.60601 1.39566 1.46741 1.22204 0.98080 1.01730 0.98665 0.92560 0.97223 0.96964 0.93486 0.93803 0.75240 0.91321 0.92534 0.90563 0.92857 0.90238 0.89947 0.88530 0.92156 0.87069 0.87428 0.89369 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 13.29 21.44 0.28 -52.74 16 2 C 0.01 0.54 5.46 84.65 0.46 1.01 16 3 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -29.92 9.11 25.60 0.23 -29.69 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.08 5.09 29.85 0.15 1.24 16 10 C 0.14 5.71 5.61 86.38 0.48 6.19 16 11 N -0.72 -22.38 5.32 -463.04 -2.46 -24.84 16 12 C 0.51 15.41 7.14 87.65 0.63 16.04 16 13 O -0.59 -22.89 15.72 -3.05 -0.05 -22.94 16 14 C -0.10 -1.99 2.07 -11.56 -0.02 -2.01 16 15 H 0.14 2.09 3.44 -2.39 -0.01 2.08 16 16 C -0.10 -2.16 4.53 30.83 0.14 -2.02 16 17 C -0.12 -2.02 5.37 30.77 0.17 -1.85 16 18 C -0.13 -1.60 5.51 30.79 0.17 -1.43 16 19 C -0.11 -1.24 5.63 30.65 0.17 -1.06 16 20 C -0.18 -2.19 5.45 29.66 0.16 -2.03 16 21 C 0.38 7.24 4.17 28.86 0.12 7.36 16 22 O -0.50 -13.12 17.42 -1.46 -0.03 -13.15 16 23 C -0.17 -3.29 5.22 29.57 0.15 -3.13 16 24 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.41 10.45 7.84 -92.71 -0.73 9.72 16 30 H 0.07 1.61 7.59 -2.39 -0.02 1.59 16 31 H 0.06 1.33 7.84 -2.39 -0.02 1.31 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.00 5.66 -2.39 -0.01 0.98 16 34 H 0.08 0.91 5.52 -2.39 -0.01 0.90 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.79 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.86 7.56 -2.39 -0.02 0.84 16 38 H 0.11 0.97 6.16 -2.39 -0.01 0.96 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.95 7.82 -2.38 -0.02 1.93 16 41 H 0.12 2.09 7.23 -2.39 -0.02 2.07 16 Total: -1.00 -69.10 320.82 3.10 -66.00 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.30 Total: 14.14 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.02 Total: -11.40 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.18 Total: -77.59 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.07 Total: -36.09 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.10 3.10 -66.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487020380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.707 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds