Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47687 * 270.00084 * 3 2 1 5 5 H 1.48507 * 109.47505 * 30.00420 * 3 2 1 6 6 H 1.48501 * 109.47250 * 150.00031 * 3 2 1 7 7 C 1.37870 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47249 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00091 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.50691 * 119.99994 * 180.02562 * 12 11 10 15 15 H 1.08996 * 109.48434 * 60.01888 * 14 12 11 16 16 C 1.52671 * 109.48668 * 180.02562 * 14 12 11 17 17 C 1.54024 * 110.40230 * 193.54210 * 16 14 12 18 18 C 1.52454 * 111.05491 * 44.78780 * 17 16 14 19 19 C 1.54100 * 109.26644 * 245.78986 * 18 17 16 20 20 C 1.52048 * 109.16732 * 78.00616 * 19 18 17 21 21 C 1.51151 * 109.19090 * 287.33821 * 20 19 18 22 22 O 1.20767 * 120.45168 * 291.13272 * 21 20 19 23 23 C 1.49506 * 119.12114 * 111.06635 * 21 20 19 24 24 H 0.96997 * 120.00018 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47626 * 59.99396 * 9 7 2 26 26 H 1.09000 * 109.46999 * 299.99493 * 9 7 2 27 27 H 1.08996 * 109.47167 * 59.99795 * 10 9 7 28 28 H 1.09000 * 109.46788 * 299.99722 * 10 9 7 29 29 H 0.97001 * 120.00245 * 359.97438 * 11 10 9 30 30 H 1.09009 * 109.30780 * 313.82282 * 16 14 12 31 31 H 1.09002 * 109.31272 * 73.25101 * 16 14 12 32 32 H 1.08999 * 109.16130 * 165.19560 * 17 16 14 33 33 H 1.09000 * 109.15908 * 284.37948 * 17 16 14 34 34 H 1.08997 * 109.50192 * 5.72515 * 18 17 16 35 35 H 1.08994 * 109.50416 * 125.84896 * 18 17 16 36 36 H 1.09001 * 109.51963 * 197.90706 * 19 18 17 37 37 H 1.08992 * 109.52321 * 318.09583 * 19 18 17 38 38 H 1.09000 * 109.52916 * 47.26909 * 20 19 18 39 39 H 1.09001 * 109.52466 * 167.40801 * 20 19 18 40 40 H 1.09002 * 109.80134 * 197.49611 * 23 21 20 41 41 H 1.09003 * 109.80036 * 76.69264 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5130 -4.9308 -0.0033 12 6 2.1869 -6.0980 -0.0047 13 8 3.3997 -6.0979 -0.0061 14 6 1.4334 -7.4030 -0.0058 15 1 0.8067 -7.4602 -0.8957 16 6 2.4252 -8.5637 -0.0067 17 6 1.7071 -9.8834 -0.3459 18 6 0.7552 -9.7021 -1.5229 19 6 -0.6946 -9.9003 -1.0395 20 6 -1.1573 -8.6432 -0.3201 21 6 -0.4678 -8.5567 1.0222 22 8 -0.7352 -9.3425 1.8994 23 6 0.5508 -7.4862 1.2493 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6243 -2.5575 0.8880 27 1 2.8721 -3.6050 0.8872 28 1 2.8721 -3.6034 -0.8927 29 1 0.5430 -4.9308 -0.0026 30 1 3.2010 -8.3743 -0.7488 31 1 2.8848 -8.6460 0.9783 32 1 2.4497 -10.6399 -0.5995 33 1 1.1411 -10.2165 0.5240 34 1 0.8685 -8.6979 -1.9312 35 1 0.9856 -10.4373 -2.2938 36 1 -1.3416 -10.0887 -1.8963 37 1 -0.7379 -10.7481 -0.3559 38 1 -0.9034 -7.7674 -0.9172 39 1 -2.2366 -8.6838 -0.1734 40 1 1.1632 -7.7369 2.1154 41 1 0.0522 -6.5309 1.4139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487020381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -105.498767 kcal Electronic energy + Delta-G solvation = -20699.035384 eV Core-core repulsion = 17577.756935 eV Total energy + Delta-G solvation = -3121.278449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.82220 -39.15395 -36.86102 -34.94686 -33.68253 -32.86521 -31.78105 -29.63575 -26.77342 -26.33747 -24.58734 -22.59935 -21.27809 -20.71335 -19.90989 -19.04381 -17.41072 -16.48558 -16.37175 -15.73798 -15.40662 -14.98547 -14.77935 -14.55354 -14.47871 -14.02876 -13.99763 -13.53524 -13.06505 -12.60314 -12.49685 -12.32277 -12.27320 -11.87270 -11.63980 -11.29876 -11.22956 -11.06346 -10.99320 -10.67906 -10.55812 -10.48905 -10.37117 -9.97942 -9.69410 -9.43239 -9.16099 -8.59254 -8.39971 -6.12805 -4.15745 1.74529 2.90346 3.27283 3.33616 3.37223 3.54823 3.88540 4.38279 4.40694 4.47965 4.55343 4.62427 4.74816 4.83676 4.92082 5.10721 5.18231 5.24500 5.26126 5.37823 5.43668 5.57012 5.60236 5.67240 5.72666 5.84943 5.89309 6.00082 6.14491 6.21096 6.30018 6.30139 6.69010 6.85108 7.29385 7.46941 7.56806 7.85120 7.93880 8.23776 8.57766 8.90215 9.49482 10.98746 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.003680 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.953045 B = 7605.921806 C = 7990.306625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.722 5.722 12 C 0.509 3.491 13 O -0.546 6.546 14 C -0.114 4.114 15 H 0.113 0.887 16 C -0.104 4.104 17 C -0.131 4.131 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.178 4.178 21 C 0.373 3.627 22 O -0.461 6.461 23 C -0.168 4.168 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.396 0.604 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -18.931 -2.554 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.372 5.372 12 C 0.294 3.706 13 O -0.424 6.424 14 C -0.135 4.135 15 H 0.131 0.869 16 C -0.142 4.142 17 C -0.169 4.169 18 C -0.171 4.171 19 C -0.149 4.149 20 C -0.215 4.215 21 C 0.249 3.751 22 O -0.335 6.335 23 C -0.206 4.206 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.230 0.770 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.143 -19.200 -2.081 19.431 hybrid contribution -0.101 1.167 -0.044 1.172 sum -2.245 -18.033 -2.125 18.296 Atomic orbital electron populations 1.69951 1.06088 1.26914 1.50347 1.24987 0.94888 0.99410 0.94934 0.86517 0.79861 0.82995 0.78218 1.20544 1.21151 1.19718 1.21046 0.93254 0.90395 1.51417 0.92260 1.19324 0.94193 0.91155 0.97824 1.21740 0.96069 0.81501 1.00843 1.46358 1.10447 1.06637 1.73748 1.20409 0.88165 0.85314 0.76712 1.90678 1.13962 1.87678 1.50046 1.21670 0.98104 0.94241 0.99482 0.86911 1.21601 0.97265 0.91760 1.03562 1.21873 0.98906 0.97726 0.98350 1.21976 0.94062 1.02877 0.98155 1.21628 0.96660 0.96452 1.00195 1.22195 1.02084 1.01031 0.96220 1.24328 0.80020 0.82412 0.88353 1.90412 1.59223 1.38526 1.45346 1.22256 0.98037 1.00845 0.99462 0.92823 0.95945 0.95945 0.92533 0.92514 0.77009 0.90216 0.91121 0.91371 0.91843 0.90603 0.91380 0.90725 0.91021 0.88903 0.88645 0.88224 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 11 N -0.72 -11.57 5.32 -60.30 -0.32 -11.89 16 12 C 0.51 7.86 7.14 -10.99 -0.08 7.78 16 13 O -0.55 -10.61 15.72 5.56 0.09 -10.53 16 14 C -0.11 -1.24 2.07 -91.60 -0.19 -1.43 16 15 H 0.11 1.00 3.44 -51.93 -0.18 0.82 16 16 C -0.10 -1.13 4.54 -26.37 -0.12 -1.25 16 17 C -0.13 -1.16 5.37 -26.48 -0.14 -1.30 16 18 C -0.13 -0.99 5.51 -26.44 -0.15 -1.14 16 19 C -0.11 -0.80 5.63 -26.64 -0.15 -0.95 16 20 C -0.18 -1.36 5.44 -28.15 -0.15 -1.51 16 21 C 0.37 3.83 4.17 -29.39 -0.12 3.71 16 22 O -0.46 -6.24 17.43 5.99 0.10 -6.13 16 23 C -0.17 -1.73 5.23 -28.11 -0.15 -1.88 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.40 5.32 7.84 -40.82 -0.32 5.00 16 30 H 0.08 0.96 7.59 -51.92 -0.39 0.56 16 31 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 5.66 -51.93 -0.29 0.33 16 34 H 0.08 0.57 5.52 -51.93 -0.29 0.28 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.59 7.57 -51.93 -0.39 0.19 16 38 H 0.09 0.59 6.16 -51.93 -0.32 0.27 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.10 7.85 -51.93 -0.41 0.69 16 41 H 0.11 1.04 7.24 -51.93 -0.38 0.66 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -32.05 320.91 -7.70 -39.75 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.30 Total: 1.18 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.82 Total: -8.35 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.42 Total: -36.82 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.19 Total: -16.66 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.05 -7.70 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487020381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.751 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds