Wall clock time and date at job start Mon Mar 30 2020 01:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47687 * 270.00084 * 3 2 1 5 5 H 1.48507 * 109.47505 * 30.00420 * 3 2 1 6 6 H 1.48501 * 109.47250 * 150.00031 * 3 2 1 7 7 C 1.37870 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47249 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00091 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.50691 * 119.99994 * 180.02562 * 12 11 10 15 15 H 1.08996 * 109.48434 * 60.01888 * 14 12 11 16 16 C 1.52671 * 109.48668 * 180.02562 * 14 12 11 17 17 C 1.54024 * 110.40230 * 193.54210 * 16 14 12 18 18 C 1.52454 * 111.05491 * 44.78780 * 17 16 14 19 19 C 1.54100 * 109.26644 * 245.78986 * 18 17 16 20 20 C 1.52048 * 109.16732 * 78.00616 * 19 18 17 21 21 C 1.51151 * 109.19090 * 287.33821 * 20 19 18 22 22 O 1.20767 * 120.45168 * 291.13272 * 21 20 19 23 23 C 1.49506 * 119.12114 * 111.06635 * 21 20 19 24 24 H 0.96997 * 120.00018 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47626 * 59.99396 * 9 7 2 26 26 H 1.09000 * 109.46999 * 299.99493 * 9 7 2 27 27 H 1.08996 * 109.47167 * 59.99795 * 10 9 7 28 28 H 1.09000 * 109.46788 * 299.99722 * 10 9 7 29 29 H 0.97001 * 120.00245 * 359.97438 * 11 10 9 30 30 H 1.09009 * 109.30780 * 313.82282 * 16 14 12 31 31 H 1.09002 * 109.31272 * 73.25101 * 16 14 12 32 32 H 1.08999 * 109.16130 * 165.19560 * 17 16 14 33 33 H 1.09000 * 109.15908 * 284.37948 * 17 16 14 34 34 H 1.08997 * 109.50192 * 5.72515 * 18 17 16 35 35 H 1.08994 * 109.50416 * 125.84896 * 18 17 16 36 36 H 1.09001 * 109.51963 * 197.90706 * 19 18 17 37 37 H 1.08992 * 109.52321 * 318.09583 * 19 18 17 38 38 H 1.09000 * 109.52916 * 47.26909 * 20 19 18 39 39 H 1.09001 * 109.52466 * 167.40801 * 20 19 18 40 40 H 1.09002 * 109.80134 * 197.49611 * 23 21 20 41 41 H 1.09003 * 109.80036 * 76.69264 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5130 -4.9308 -0.0033 12 6 2.1869 -6.0980 -0.0047 13 8 3.3997 -6.0979 -0.0061 14 6 1.4334 -7.4030 -0.0058 15 1 0.8067 -7.4602 -0.8957 16 6 2.4252 -8.5637 -0.0067 17 6 1.7071 -9.8834 -0.3459 18 6 0.7552 -9.7021 -1.5229 19 6 -0.6946 -9.9003 -1.0395 20 6 -1.1573 -8.6432 -0.3201 21 6 -0.4678 -8.5567 1.0222 22 8 -0.7352 -9.3425 1.8994 23 6 0.5508 -7.4862 1.2493 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6243 -2.5575 0.8880 27 1 2.8721 -3.6050 0.8872 28 1 2.8721 -3.6034 -0.8927 29 1 0.5430 -4.9308 -0.0026 30 1 3.2010 -8.3743 -0.7488 31 1 2.8848 -8.6460 0.9783 32 1 2.4497 -10.6399 -0.5995 33 1 1.1411 -10.2165 0.5240 34 1 0.8685 -8.6979 -1.9312 35 1 0.9856 -10.4373 -2.2938 36 1 -1.3416 -10.0887 -1.8963 37 1 -0.7379 -10.7481 -0.3559 38 1 -0.9034 -7.7674 -0.9172 39 1 -2.2366 -8.6838 -0.1734 40 1 1.1632 -7.7369 2.1154 41 1 0.0522 -6.5309 1.4139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487020381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:47 Heat of formation + Delta-G solvation = -125.781006 kcal Electronic energy + Delta-G solvation = -20699.914888 eV Core-core repulsion = 17577.756935 eV Total energy + Delta-G solvation = -3122.157953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77592 -40.35385 -37.75595 -36.57640 -34.89292 -34.40079 -32.62853 -31.38661 -27.67998 -27.41803 -26.17649 -23.53220 -22.81695 -21.88762 -20.87756 -19.92444 -18.66019 -18.32872 -17.30064 -16.95692 -16.51466 -16.32060 -16.06483 -16.02659 -15.45101 -14.92741 -14.84129 -14.70198 -14.54404 -14.29174 -13.47162 -13.30435 -13.17379 -13.11722 -12.93005 -12.68203 -12.55127 -12.39000 -12.21065 -11.99498 -11.72761 -11.62897 -11.45232 -11.30899 -11.22813 -10.92113 -10.59095 -10.37806 -9.99561 -8.23357 -6.33209 0.91518 1.42439 1.42940 1.53970 1.64148 2.23659 2.45444 3.08662 3.11820 3.59891 3.63286 3.72341 3.86338 4.00204 4.08179 4.18646 4.23878 4.46173 4.50210 4.54065 4.54901 4.58235 4.75427 4.86486 4.88114 4.90258 4.94136 5.12553 5.16630 5.22421 5.28507 5.33657 5.34884 5.50368 5.51441 5.60957 5.80458 6.17998 6.49133 6.63613 6.80160 7.28772 7.36213 8.88222 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.003680 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.953045 B = 7605.921806 C = 7990.306625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.586 6.586 14 C -0.098 4.098 15 H 0.142 0.858 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.177 4.177 21 C 0.379 3.621 22 O -0.497 6.497 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.411 0.589 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -19.320 -3.633 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.366 5.366 12 C 0.298 3.702 13 O -0.467 6.467 14 C -0.118 4.118 15 H 0.159 0.841 16 C -0.141 4.141 17 C -0.162 4.162 18 C -0.170 4.170 19 C -0.147 4.147 20 C -0.215 4.215 21 C 0.258 3.742 22 O -0.373 6.373 23 C -0.207 4.207 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.248 0.752 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.775 -19.604 -3.169 20.051 hybrid contribution 0.107 1.261 0.309 1.303 sum -2.668 -18.343 -2.860 18.755 Atomic orbital electron populations 1.70045 1.07426 1.27947 1.51043 1.25811 0.95754 1.02897 0.94460 0.85502 0.78645 0.78734 0.78514 1.19751 1.20599 1.19229 1.21477 0.93548 0.92083 1.51473 0.92490 1.19137 0.94227 0.91611 0.96530 1.21220 0.95069 0.82405 0.99759 1.46149 1.11122 1.05509 1.73838 1.21139 0.87827 0.86213 0.75062 1.90665 1.16027 1.88284 1.51683 1.21623 0.97932 0.91240 1.01031 0.84050 1.21586 0.97187 0.92853 1.02499 1.21830 0.99204 0.96458 0.98734 1.22002 0.93786 1.03562 0.97668 1.21632 0.96786 0.95621 1.00615 1.22283 1.02531 1.02158 0.94487 1.24616 0.79359 0.81167 0.89068 1.90411 1.60453 1.39682 1.46782 1.22269 0.98067 1.01697 0.98639 0.92565 0.96970 0.97213 0.93827 0.93470 0.75238 0.91325 0.92536 0.90567 0.92862 0.90234 0.89944 0.88534 0.92156 0.87066 0.87438 0.89382 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 13.29 21.45 0.28 -52.75 16 2 C 0.01 0.53 5.46 84.65 0.46 1.00 16 3 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.08 5.09 29.85 0.15 1.24 16 10 C 0.14 5.71 5.61 86.38 0.48 6.19 16 11 N -0.72 -22.38 5.32 -463.06 -2.46 -24.84 16 12 C 0.51 15.41 7.14 87.65 0.63 16.04 16 13 O -0.59 -22.90 15.72 -3.03 -0.05 -22.95 16 14 C -0.10 -1.99 2.07 -11.43 -0.02 -2.01 16 15 H 0.14 2.09 3.44 -2.39 -0.01 2.08 16 16 C -0.10 -2.16 4.54 30.83 0.14 -2.02 16 17 C -0.12 -2.01 5.37 30.76 0.17 -1.85 16 18 C -0.13 -1.59 5.51 30.79 0.17 -1.42 16 19 C -0.11 -1.24 5.63 30.65 0.17 -1.06 16 20 C -0.18 -2.19 5.44 29.68 0.16 -2.03 16 21 C 0.38 7.24 4.17 28.87 0.12 7.36 16 22 O -0.50 -13.13 17.43 -1.47 -0.03 -13.16 16 23 C -0.17 -3.29 5.23 29.70 0.16 -3.13 16 24 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.41 10.45 7.84 -92.71 -0.73 9.72 16 30 H 0.07 1.61 7.59 -2.38 -0.02 1.59 16 31 H 0.06 1.33 7.87 -2.39 -0.02 1.31 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.99 5.66 -2.39 -0.01 0.98 16 34 H 0.08 0.91 5.52 -2.39 -0.01 0.90 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.86 7.57 -2.39 -0.02 0.84 16 38 H 0.11 0.97 6.16 -2.39 -0.01 0.95 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.94 7.85 -2.39 -0.02 1.92 16 41 H 0.12 2.09 7.24 -2.39 -0.02 2.08 16 Total: -1.00 -69.12 320.91 3.10 -66.02 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.31 Total: 14.12 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.02 Total: -11.39 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.18 Total: -77.59 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.07 Total: -36.10 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.12 3.10 -66.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487020381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.759 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds