Wall clock time and date at job start Mon Mar 30 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46697 * 210.58183 * 3 2 1 5 5 C 1.36939 * 120.00009 * 264.38618 * 4 3 2 6 6 H 1.08004 * 119.99813 * 198.54540 * 5 4 3 7 7 C 1.38815 * 120.00114 * 18.54957 * 5 4 3 8 8 N 1.31616 * 119.99488 * 11.34115 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 191.34089 * 7 5 4 10 10 H 1.48496 * 109.46884 * 84.97827 * 9 7 5 11 11 H 1.48497 * 109.46907 * 204.98098 * 9 7 5 12 12 H 1.48508 * 109.46932 * 324.97932 * 9 7 5 13 13 C 1.46504 * 120.00261 * 84.39231 * 4 3 2 14 14 C 1.52997 * 109.46937 * 269.99760 * 13 4 3 15 15 S 1.81404 * 109.46745 * 179.97438 * 14 13 4 16 16 C 1.81405 * 102.99812 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47183 * 64.99623 * 16 15 14 18 18 C 1.52996 * 109.47274 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47379 * 300.00491 * 18 17 16 20 20 C 1.53004 * 109.46977 * 59.99517 * 19 18 17 21 21 C 1.52996 * 109.47460 * 300.00433 * 20 19 18 22 22 H 4.40635 * 5.51465 * 180.02562 * 4 1 2 23 23 H 1.09006 * 109.46746 * 90.58593 * 3 2 1 24 24 H 1.08992 * 109.47416 * 330.58733 * 3 2 1 25 25 H 0.97008 * 119.99220 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.46977 * 149.99383 * 13 4 3 27 27 H 1.09007 * 109.46645 * 29.99578 * 13 4 3 28 28 H 1.09005 * 109.47075 * 60.00133 * 14 13 4 29 29 H 1.08998 * 109.47061 * 299.99408 * 14 13 4 30 30 H 1.09002 * 109.46864 * 305.00374 * 16 15 14 31 31 H 1.08996 * 109.47779 * 300.00613 * 17 16 15 32 32 H 1.09002 * 109.46608 * 60.00594 * 17 16 15 33 33 H 1.09003 * 109.47439 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47092 * 60.00096 * 18 17 16 35 35 H 1.08997 * 109.47070 * 300.00235 * 19 18 17 36 36 H 1.08993 * 109.47449 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47437 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46764 * 59.99998 * 20 19 18 39 39 H 1.08997 * 109.47092 * 300.00208 * 21 20 19 40 40 H 1.09003 * 109.47439 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1900 0.7027 5 6 3.4708 2.3131 -0.0046 6 1 4.0977 3.0677 0.4470 7 6 3.0066 2.4817 -1.3019 8 7 2.0709 1.6858 -1.7746 9 14 3.7098 3.8380 -2.3767 10 1 4.9504 3.3551 -3.0346 11 1 2.7146 4.2149 -3.4124 12 1 4.0233 5.0223 -1.5372 13 6 3.2610 1.1778 2.1622 14 6 1.9515 1.6566 2.7922 15 16 2.1089 1.6408 4.5994 16 6 0.4854 2.2287 5.1555 17 6 -0.5881 1.2131 4.7589 18 6 -1.9573 1.7086 5.2284 19 6 -1.9466 1.8716 6.7497 20 6 -0.8731 2.8872 7.1462 21 6 0.4961 2.3917 6.6767 22 1 -1.0502 -0.0004 0.0000 23 1 3.0093 0.0113 -1.0277 24 1 3.0098 -0.8943 0.5046 25 1 1.7463 1.8039 -2.6811 26 1 4.0723 1.8412 2.4616 27 1 3.4772 0.1641 2.4995 28 1 1.1402 0.9931 2.4927 29 1 1.7354 2.6703 2.4549 30 1 0.2671 3.1890 4.6883 31 1 -0.5955 1.0966 3.6752 32 1 -0.3698 0.2528 5.2260 33 1 -2.7220 0.9849 4.9463 34 1 -2.1758 2.6691 4.7617 35 1 -1.7280 0.9112 7.2165 36 1 -2.9218 2.2250 7.0842 37 1 -0.8657 3.0037 8.2299 38 1 -1.0916 3.8477 6.6794 39 1 0.7146 1.4313 7.1434 40 1 1.2608 3.1155 6.9588 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491780251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:59 Heat of formation + Delta-G solvation = 51.343768 kcal Electronic energy + Delta-G solvation = -18249.399802 eV Core-core repulsion = 15577.675426 eV Total energy + Delta-G solvation = -2671.724376 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.28938 -36.35845 -32.06340 -31.55722 -30.89506 -30.82272 -29.04896 -26.07863 -23.88750 -22.65905 -22.54325 -20.67630 -19.80162 -17.51062 -16.54060 -16.24100 -15.24521 -14.97446 -14.50137 -14.29247 -14.12546 -13.99708 -13.48171 -13.11763 -12.87420 -12.66497 -12.25317 -12.21453 -11.65477 -11.45912 -11.26829 -11.21316 -11.19837 -10.84278 -10.64102 -10.51199 -10.36382 -10.28711 -10.12855 -9.89784 -9.38090 -9.02669 -8.84664 -8.40172 -7.24864 -7.07106 -5.82819 -3.29879 2.09941 3.09259 3.34254 3.40584 3.41461 4.16377 4.36532 4.48758 4.61620 4.63126 4.86195 5.08483 5.15446 5.31616 5.37274 5.39503 5.44713 5.55803 5.64609 5.69321 5.75025 5.79656 5.93639 5.99153 6.00167 6.01502 6.07542 6.14361 6.21840 6.35444 6.38019 6.58690 6.67904 6.85698 7.30353 7.44431 7.68092 8.24222 9.06711 9.15782 9.69282 10.14891 11.19125 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.004679 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.487970 B = 5983.362860 C = 6245.116329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.086 4.086 3 C 0.263 3.737 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.077 0.923 7 C 0.002 3.998 8 N -0.897 5.897 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.164 3.836 14 C -0.087 4.087 15 S -0.301 6.301 16 C -0.046 4.046 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.097 4.097 22 H 0.188 0.812 23 H 0.111 0.889 24 H 0.034 0.966 25 H 0.256 0.744 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 -0.947 13.913 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.089 4.089 3 C 0.138 3.862 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.095 0.905 7 C -0.197 4.197 8 N -0.542 5.542 9 Si 0.740 3.260 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.036 3.964 14 C -0.237 4.237 15 S -0.072 6.072 16 C -0.175 4.175 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.135 4.135 22 H 0.206 0.794 23 H 0.128 0.872 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.547 -1.222 14.306 15.061 hybrid contribution -1.355 1.337 -1.517 2.434 sum -5.903 0.115 12.790 14.086 Atomic orbital electron populations 1.24158 0.95321 1.06418 1.07302 1.24355 0.95294 0.94846 0.94364 1.18053 0.82712 0.86358 0.99106 1.44307 1.74095 1.12176 0.99339 1.19335 1.24765 0.99124 0.95774 0.90516 1.25028 0.97018 0.98800 0.98829 1.70021 1.28083 1.39508 1.16543 0.86186 0.78178 0.81430 0.80224 1.21205 1.21731 1.20556 1.20707 0.92771 0.98828 0.84085 1.24588 1.05830 1.04962 0.88368 1.86561 1.21312 1.88570 1.10734 1.23042 0.94445 1.01051 0.98937 1.21845 0.93443 0.98412 1.01561 1.21561 0.97016 1.01406 0.95670 1.21552 0.98510 0.99501 0.96146 1.21543 0.94459 0.98919 1.00472 1.21341 0.97345 1.02161 0.92689 0.79435 0.87161 0.94809 0.93357 0.92471 0.93269 0.90597 0.90684 0.90124 0.91494 0.91017 0.91823 0.92053 0.91924 0.92164 0.91761 0.91941 0.91245 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.09 19.25 29.55 0.57 -6.52 16 2 C -0.09 -2.07 10.58 -37.12 -0.39 -2.46 16 3 C 0.26 6.23 5.45 -6.83 -0.04 6.19 16 4 N -0.58 -14.05 2.50 -176.57 -0.44 -14.49 16 5 C -0.26 -6.88 9.72 -15.06 -0.15 -7.02 16 6 H 0.08 1.99 7.84 -52.48 -0.41 1.58 16 7 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 8 N -0.90 -24.96 8.96 55.49 0.50 -24.46 16 9 Si 0.91 21.33 29.57 -169.99 -5.03 16.30 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.16 3.42 5.70 -4.04 -0.02 3.39 16 14 C -0.09 -1.70 5.82 37.16 0.22 -1.49 16 15 S -0.30 -5.02 21.15 -107.50 -2.27 -7.29 16 16 C -0.05 -0.63 2.65 -26.73 -0.07 -0.71 16 17 C -0.11 -1.50 5.11 -26.73 -0.14 -1.63 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 20 C -0.11 -1.09 5.92 -26.73 -0.16 -1.25 16 21 C -0.10 -1.11 5.21 -26.73 -0.14 -1.25 16 22 H 0.19 3.60 7.80 -54.08 -0.42 3.18 16 23 H 0.11 2.85 6.19 -51.93 -0.32 2.53 16 24 H 0.03 0.71 7.97 -51.93 -0.41 0.30 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 27 H 0.05 0.96 7.95 -51.93 -0.41 0.54 16 28 H 0.08 1.58 6.21 -51.92 -0.32 1.26 16 29 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 30 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 31 H 0.07 1.02 6.92 -51.93 -0.36 0.66 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -27.76 332.67 -9.82 -37.58 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.87 Total: 2.84 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.73 Total: -15.49 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.06 Total: -38.95 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.27 Total: -7.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.76 -9.82 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491780251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.928 kcal (2) G-P(sol) polarization free energy of solvation -27.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds