Wall clock time and date at job start Mon Mar 30 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46697 * 210.58183 * 3 2 1 5 5 C 1.36939 * 120.00009 * 264.38618 * 4 3 2 6 6 H 1.08004 * 119.99813 * 198.54540 * 5 4 3 7 7 C 1.38815 * 120.00114 * 18.54957 * 5 4 3 8 8 N 1.31616 * 119.99488 * 11.34115 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 191.34089 * 7 5 4 10 10 H 1.48496 * 109.46884 * 84.97827 * 9 7 5 11 11 H 1.48497 * 109.46907 * 204.98098 * 9 7 5 12 12 H 1.48508 * 109.46932 * 324.97932 * 9 7 5 13 13 C 1.46504 * 120.00261 * 84.39231 * 4 3 2 14 14 C 1.52997 * 109.46937 * 269.99760 * 13 4 3 15 15 S 1.81404 * 109.46745 * 179.97438 * 14 13 4 16 16 C 1.81405 * 102.99812 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47183 * 64.99623 * 16 15 14 18 18 C 1.52996 * 109.47274 * 179.97438 * 17 16 15 19 19 C 1.53005 * 109.47379 * 300.00491 * 18 17 16 20 20 C 1.53004 * 109.46977 * 59.99517 * 19 18 17 21 21 C 1.52996 * 109.47460 * 300.00433 * 20 19 18 22 22 H 4.40635 * 5.51465 * 180.02562 * 4 1 2 23 23 H 1.09006 * 109.46746 * 90.58593 * 3 2 1 24 24 H 1.08992 * 109.47416 * 330.58733 * 3 2 1 25 25 H 0.97008 * 119.99220 * 179.97438 * 8 7 5 26 26 H 1.08995 * 109.46977 * 149.99383 * 13 4 3 27 27 H 1.09007 * 109.46645 * 29.99578 * 13 4 3 28 28 H 1.09005 * 109.47075 * 60.00133 * 14 13 4 29 29 H 1.08998 * 109.47061 * 299.99408 * 14 13 4 30 30 H 1.09002 * 109.46864 * 305.00374 * 16 15 14 31 31 H 1.08996 * 109.47779 * 300.00613 * 17 16 15 32 32 H 1.09002 * 109.46608 * 60.00594 * 17 16 15 33 33 H 1.09003 * 109.47439 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47092 * 60.00096 * 18 17 16 35 35 H 1.08997 * 109.47070 * 300.00235 * 19 18 17 36 36 H 1.08993 * 109.47449 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47437 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46764 * 59.99998 * 20 19 18 39 39 H 1.08997 * 109.47092 * 300.00208 * 21 20 19 40 40 H 1.09003 * 109.47439 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1900 0.7027 5 6 3.4708 2.3131 -0.0046 6 1 4.0977 3.0677 0.4470 7 6 3.0066 2.4817 -1.3019 8 7 2.0709 1.6858 -1.7746 9 14 3.7098 3.8380 -2.3767 10 1 4.9504 3.3551 -3.0346 11 1 2.7146 4.2149 -3.4124 12 1 4.0233 5.0223 -1.5372 13 6 3.2610 1.1778 2.1622 14 6 1.9515 1.6566 2.7922 15 16 2.1089 1.6408 4.5994 16 6 0.4854 2.2287 5.1555 17 6 -0.5881 1.2131 4.7589 18 6 -1.9573 1.7086 5.2284 19 6 -1.9466 1.8716 6.7497 20 6 -0.8731 2.8872 7.1462 21 6 0.4961 2.3917 6.6767 22 1 -1.0502 -0.0004 0.0000 23 1 3.0093 0.0113 -1.0277 24 1 3.0098 -0.8943 0.5046 25 1 1.7463 1.8039 -2.6811 26 1 4.0723 1.8412 2.4616 27 1 3.4772 0.1641 2.4995 28 1 1.1402 0.9931 2.4927 29 1 1.7354 2.6703 2.4549 30 1 0.2671 3.1890 4.6883 31 1 -0.5955 1.0966 3.6752 32 1 -0.3698 0.2528 5.2260 33 1 -2.7220 0.9849 4.9463 34 1 -2.1758 2.6691 4.7617 35 1 -1.7280 0.9112 7.2165 36 1 -2.9218 2.2250 7.0842 37 1 -0.8657 3.0037 8.2299 38 1 -1.0916 3.8477 6.6794 39 1 0.7146 1.4313 7.1434 40 1 1.2608 3.1155 6.9588 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491780251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:58 Heat of formation + Delta-G solvation = 39.861288 kcal Electronic energy + Delta-G solvation = -18249.897720 eV Core-core repulsion = 15577.675426 eV Total energy + Delta-G solvation = -2672.222294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.21492 -38.20897 -33.93850 -33.40971 -31.87916 -31.74696 -30.81715 -28.00357 -25.64659 -23.66981 -23.54311 -22.38112 -20.74075 -19.40422 -18.37955 -17.41528 -17.06096 -16.22185 -15.95032 -15.72224 -15.31948 -15.19848 -14.95415 -14.69015 -14.53378 -13.76111 -13.61934 -13.35667 -13.20573 -13.07492 -12.83445 -12.70371 -12.46800 -12.24821 -12.21971 -12.10141 -11.80896 -11.54271 -11.37175 -11.09353 -10.94677 -10.74173 -10.60668 -10.28194 -9.01637 -8.63821 -7.85020 -5.34005 0.75273 1.47287 1.48366 1.55668 1.67712 2.32087 2.49938 2.57797 3.28348 3.65042 3.67463 3.82484 4.01731 4.04066 4.07947 4.18477 4.25373 4.31659 4.38341 4.48231 4.53966 4.60299 4.68747 4.87845 4.89461 4.89637 5.05861 5.08630 5.17117 5.17928 5.20391 5.29914 5.32890 5.38195 5.50079 5.58882 5.66475 6.26090 7.07021 7.32256 7.75431 8.17677 9.14683 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.004679 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.487970 B = 5983.362860 C = 6245.116329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.119 4.119 3 C 0.265 3.735 4 N -0.594 5.594 5 C -0.269 4.269 6 H 0.075 0.925 7 C -0.045 4.045 8 N -0.919 5.919 9 Si 0.969 3.031 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.275 1.275 13 C 0.166 3.834 14 C -0.074 4.074 15 S -0.294 6.294 16 C -0.041 4.041 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.093 4.093 22 H 0.218 0.782 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.248 0.752 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 -0.664 15.888 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.122 4.122 3 C 0.140 3.860 4 N -0.315 5.315 5 C -0.399 4.399 6 H 0.093 0.907 7 C -0.241 4.241 8 N -0.564 5.564 9 Si 0.798 3.202 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.200 1.200 13 C 0.039 3.961 14 C -0.225 4.225 15 S -0.065 6.065 16 C -0.170 4.170 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.131 4.131 22 H 0.235 0.765 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.363 -0.943 16.307 17.192 hybrid contribution -1.123 1.225 -2.005 2.604 sum -6.486 0.282 14.302 15.707 Atomic orbital electron populations 1.24918 0.96279 1.05206 1.05986 1.24642 0.95993 0.96004 0.95579 1.17943 0.82906 0.87129 0.98045 1.44390 1.74523 1.11809 1.00733 1.19556 1.24556 0.99503 0.96290 0.90699 1.25670 0.97595 1.00899 0.99892 1.70205 1.29227 1.40859 1.16158 0.85260 0.77282 0.79277 0.78404 1.20744 1.22493 1.20023 1.20732 0.93144 0.99688 0.82518 1.24085 1.04484 1.02692 0.91214 1.86426 1.24032 1.88794 1.07279 1.23206 0.92478 1.00576 1.00734 1.21788 0.94822 0.98422 0.99874 1.21560 0.95444 1.01299 0.97113 1.21553 0.99440 0.99849 0.94547 1.21546 0.92898 0.98790 1.01743 1.21356 0.98951 1.02502 0.90323 0.76490 0.89744 0.92405 0.94228 0.92486 0.91804 0.92004 0.93389 0.90998 0.94181 0.90851 0.90974 0.92431 0.91381 0.90335 0.89617 0.91952 0.90954 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.71 19.25 74.32 1.43 -12.28 16 2 C -0.12 -5.81 10.58 31.13 0.33 -5.48 16 3 C 0.26 12.75 5.45 84.58 0.46 13.21 16 4 N -0.59 -29.22 2.50 -712.55 -1.78 -31.00 16 5 C -0.27 -14.42 9.72 84.03 0.82 -13.60 16 6 H 0.08 3.94 7.84 -2.91 -0.02 3.92 16 7 C -0.04 -2.42 5.12 84.86 0.43 -1.99 16 8 N -0.92 -52.13 8.96 21.65 0.19 -51.94 16 9 Si 0.97 44.41 29.57 68.60 2.03 46.43 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.17 6.95 5.70 86.38 0.49 7.44 16 14 C -0.07 -2.94 5.82 71.98 0.42 -2.52 16 15 S -0.29 -9.63 21.15 -56.49 -1.19 -10.83 16 16 C -0.04 -1.10 2.65 30.59 0.08 -1.01 16 17 C -0.11 -2.80 5.11 30.59 0.16 -2.64 16 18 C -0.11 -2.28 5.92 30.59 0.18 -2.10 16 19 C -0.12 -1.81 5.92 30.60 0.18 -1.62 16 20 C -0.11 -1.76 5.92 30.59 0.18 -1.57 16 21 C -0.09 -1.90 5.21 30.59 0.16 -1.74 16 22 H 0.22 8.02 7.80 -4.41 -0.03 7.98 16 23 H 0.08 4.50 6.19 -2.38 -0.01 4.48 16 24 H 0.06 2.43 7.97 -2.39 -0.02 2.42 16 25 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 26 H 0.06 2.35 8.03 -2.39 -0.02 2.34 16 27 H 0.06 2.45 7.95 -2.38 -0.02 2.44 16 28 H 0.06 2.63 6.21 -2.39 -0.01 2.61 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.23 6.92 -2.39 -0.02 1.21 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -59.55 332.67 5.54 -54.00 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.98 Total: 19.25 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 5.32 Total: -25.92 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.59 Total: -82.94 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.19 Total: -10.83 kcal Total: -59.55 5.54 -54.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491780251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.865 kcal (2) G-P(sol) polarization free energy of solvation -59.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds