Wall clock time and date at job start Mon Mar 30 2020 00:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48502 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47078 * 300.00327 * 3 2 1 6 6 H 1.48500 * 109.46950 * 60.00638 * 3 2 1 7 7 C 1.37880 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.45858 * 179.97438 * 9 7 2 11 11 C 1.53194 * 109.30797 * 178.63094 * 10 9 7 12 12 N 1.46919 * 108.77651 * 54.64261 * 11 10 9 13 13 C 1.34776 * 120.63532 * 126.36762 * 12 11 10 14 14 O 1.21285 * 119.99574 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00509 * 179.97438 * 13 12 11 16 16 O 1.42898 * 109.47357 * 179.97438 * 15 13 12 17 17 C 1.42906 * 113.99824 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46752 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49663 * 243.74346 * 18 17 16 20 20 C 1.53002 * 117.49643 * 175.08315 * 18 17 16 21 21 C 1.46933 * 118.73742 * 306.63552 * 12 11 10 22 22 C 1.52761 * 109.00349 * 53.31319 * 21 12 11 23 23 H 0.97003 * 119.99386 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46282 * 299.98055 * 9 7 2 25 25 H 1.08998 * 109.49185 * 58.68757 * 10 9 7 26 26 H 1.08995 * 109.53058 * 298.59869 * 10 9 7 27 27 H 1.09000 * 109.59117 * 294.84558 * 11 10 9 28 28 H 1.09007 * 109.69866 * 174.49511 * 11 10 9 29 29 H 1.09008 * 109.47126 * 60.00079 * 15 13 12 30 30 H 1.09002 * 109.47402 * 300.00309 * 15 13 12 31 31 H 1.08993 * 109.47732 * 60.00254 * 17 16 15 32 32 H 1.09000 * 109.47141 * 299.99893 * 17 16 15 33 33 H 1.09002 * 115.55153 * 29.41552 * 18 17 16 34 34 H 1.08998 * 117.49856 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49861 * 145.02337 * 19 18 17 36 36 H 1.08993 * 117.50251 * 214.97577 * 20 18 17 37 37 H 1.09003 * 117.49715 * 0.02562 * 20 18 17 38 38 H 1.08997 * 109.58260 * 173.14173 * 21 12 11 39 39 H 1.08998 * 109.58377 * 293.57369 * 21 12 11 40 40 H 1.09000 * 109.56070 * 185.55195 * 22 21 12 41 41 H 1.08999 * 109.36232 * 65.50099 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0018 11 6 1.4766 -4.9866 0.0327 12 7 0.5217 -5.0082 -1.0836 13 6 0.5108 -6.0335 -1.9584 14 8 1.2947 -6.9498 -1.8283 15 6 -0.4751 -6.0414 -3.0980 16 8 -0.2899 -7.2230 -3.8800 17 6 -1.1800 -7.3288 -4.9929 18 6 -0.8934 -8.6251 -5.7537 19 6 -0.3932 -8.5028 -7.1944 20 6 -1.8208 -8.9810 -6.9174 21 6 -0.4173 -3.8878 -1.2319 22 6 0.3693 -2.5784 -1.2490 23 1 -0.4849 0.8401 0.0004 24 1 0.6250 -2.5571 0.8898 25 1 2.8886 -3.5919 0.8756 26 1 2.8555 -3.6191 -0.9042 27 1 0.9376 -5.0718 0.9763 28 1 2.1735 -5.8189 -0.0664 29 1 -0.3145 -5.1632 -3.7236 30 1 -1.4900 -6.0236 -2.7006 31 1 -1.0339 -6.4773 -5.6574 32 1 -2.2096 -7.3380 -4.6352 33 1 -0.5018 -9.4460 -5.1529 34 1 -0.2680 -7.4989 -7.6002 35 1 0.3271 -9.2434 -7.5417 36 1 -2.0389 -10.0361 -7.0825 37 1 -2.6348 -8.2915 -7.1412 38 1 -0.9680 -3.9939 -2.1665 39 1 -1.1138 -3.8815 -0.3935 40 1 -0.3232 -1.7368 -1.2594 41 1 0.9964 -2.5452 -2.1399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541050161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:49 Heat of formation + Delta-G solvation = -64.719372 kcal Electronic energy + Delta-G solvation = -20393.173633 eV Core-core repulsion = 17273.663511 eV Total energy + Delta-G solvation = -3119.510122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 5.05 seconds Orbital eigenvalues (eV) -39.78975 -38.37034 -36.96509 -36.23064 -33.54809 -31.49508 -30.24300 -28.73495 -26.64891 -25.62980 -22.93522 -22.63547 -22.25236 -20.96482 -19.96445 -18.34247 -17.39219 -16.56605 -16.30762 -16.04026 -15.80262 -14.96691 -14.61634 -14.53162 -14.25983 -13.50411 -13.19231 -12.97727 -12.87464 -12.60253 -12.22499 -12.08766 -11.78603 -11.67417 -11.34549 -11.23445 -10.98921 -10.70097 -10.64307 -10.46975 -10.40768 -10.14659 -9.69665 -9.64538 -9.35514 -9.20126 -8.95168 -8.41880 -8.04165 -6.07041 -4.12806 2.91292 2.96591 3.24902 3.33624 3.37962 3.52942 3.92335 4.38193 4.57065 4.64226 4.76293 4.93582 5.08080 5.12203 5.21709 5.24175 5.30149 5.36811 5.44890 5.52892 5.63163 5.78301 5.84250 5.91449 5.97202 6.03157 6.13552 6.23558 6.42009 6.62547 6.83835 6.97033 7.05071 7.12347 7.24154 7.62542 7.87040 7.87790 7.99752 8.36565 8.54353 8.90922 9.52576 10.98575 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.003580 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.291478 B = 7819.625090 C = 8291.177992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.600 5.600 13 C 0.513 3.487 14 O -0.539 6.539 15 C 0.047 3.953 16 O -0.361 6.361 17 C 0.091 3.909 18 C -0.151 4.151 19 C -0.178 4.178 20 C -0.175 4.175 21 C 0.102 3.898 22 C -0.126 4.126 23 H 0.260 0.740 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 -11.693 -9.550 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.008 4.008 12 N -0.334 5.334 13 C 0.299 3.701 14 O -0.416 6.416 15 C -0.033 4.033 16 O -0.280 6.280 17 C 0.014 3.986 18 C -0.169 4.169 19 C -0.214 4.214 20 C -0.212 4.212 21 C -0.020 4.020 22 C -0.164 4.164 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.423 -12.192 -9.433 16.341 hybrid contribution 0.136 1.329 -0.108 1.341 sum -5.287 -10.862 -9.540 15.394 Atomic orbital electron populations 1.69840 1.05847 1.26366 1.51103 1.24963 0.94887 0.99091 0.95078 0.86555 0.80216 0.83793 0.77561 1.19821 1.21065 1.21040 1.21250 0.93023 0.90530 1.50055 0.92615 1.18640 0.92663 0.91802 0.93941 1.22013 0.98919 0.94147 1.01096 1.21704 0.91694 0.99789 0.87650 1.48187 1.36514 1.20788 1.27937 1.20080 0.84691 0.82346 0.82938 1.90666 1.40828 1.35943 1.74158 1.22254 0.98736 0.89280 0.93015 1.87990 1.58466 1.40796 1.40714 1.22054 0.92914 0.95915 0.87734 1.22117 1.04899 0.99384 0.90539 1.23087 0.97027 1.02950 0.98380 1.22987 0.93889 1.02205 1.02100 1.21990 0.91737 0.87676 1.00584 1.21967 1.00171 0.94554 0.99742 0.93033 0.95368 0.92029 0.92909 0.92080 0.90267 0.90221 0.90456 0.92988 0.92757 0.86683 0.88602 0.88595 0.88434 0.88660 0.91758 0.91652 0.87614 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 11.30 55.43 0.63 -23.38 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.41 8.56 -34.44 -0.29 -13.71 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 11 C 0.11 2.09 6.44 -3.71 -0.02 2.06 16 12 N -0.60 -10.79 2.98 -173.03 -0.52 -11.31 16 13 C 0.51 9.34 7.77 -10.99 -0.09 9.25 16 14 O -0.54 -11.70 15.91 -14.36 -0.23 -11.93 16 15 C 0.05 0.67 4.77 36.00 0.17 0.84 16 16 O -0.36 -5.50 9.88 -55.14 -0.54 -6.05 16 17 C 0.09 1.00 6.22 37.16 0.23 1.23 16 18 C -0.15 -1.54 6.05 -90.61 -0.55 -2.09 16 19 C -0.18 -1.54 10.18 -26.69 -0.27 -1.82 16 20 C -0.17 -1.35 10.26 -26.69 -0.27 -1.63 16 21 C 0.10 1.75 6.31 -3.93 -0.02 1.73 16 22 C -0.13 -2.69 5.14 -26.83 -0.14 -2.83 16 23 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 29 H 0.08 1.02 7.68 -51.92 -0.40 0.62 16 30 H 0.08 0.91 7.95 -51.93 -0.41 0.49 16 31 H 0.05 0.52 7.88 -51.93 -0.41 0.11 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.10 0.79 8.03 -51.93 -0.42 0.38 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.91 5.93 -51.93 -0.31 0.60 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.11 2.51 6.03 -51.93 -0.31 2.19 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -30.12 331.41 -9.19 -39.30 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.81 Total: -0.05 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.68 Total: -7.17 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.11 Total: -34.69 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.77 Total: -17.98 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.12 -9.19 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.418 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.05 seconds