Wall clock time and date at job start Mon Mar 30 2020 00:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48502 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47078 * 300.00327 * 3 2 1 6 6 H 1.48500 * 109.46950 * 60.00638 * 3 2 1 7 7 C 1.37880 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.45858 * 179.97438 * 9 7 2 11 11 C 1.53194 * 109.30797 * 178.63094 * 10 9 7 12 12 N 1.46919 * 108.77651 * 54.64261 * 11 10 9 13 13 C 1.34776 * 120.63532 * 126.36762 * 12 11 10 14 14 O 1.21285 * 119.99574 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00509 * 179.97438 * 13 12 11 16 16 O 1.42898 * 109.47357 * 179.97438 * 15 13 12 17 17 C 1.42906 * 113.99824 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.46752 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49663 * 243.74346 * 18 17 16 20 20 C 1.53002 * 117.49643 * 175.08315 * 18 17 16 21 21 C 1.46933 * 118.73742 * 306.63552 * 12 11 10 22 22 C 1.52761 * 109.00349 * 53.31319 * 21 12 11 23 23 H 0.97003 * 119.99386 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46282 * 299.98055 * 9 7 2 25 25 H 1.08998 * 109.49185 * 58.68757 * 10 9 7 26 26 H 1.08995 * 109.53058 * 298.59869 * 10 9 7 27 27 H 1.09000 * 109.59117 * 294.84558 * 11 10 9 28 28 H 1.09007 * 109.69866 * 174.49511 * 11 10 9 29 29 H 1.09008 * 109.47126 * 60.00079 * 15 13 12 30 30 H 1.09002 * 109.47402 * 300.00309 * 15 13 12 31 31 H 1.08993 * 109.47732 * 60.00254 * 17 16 15 32 32 H 1.09000 * 109.47141 * 299.99893 * 17 16 15 33 33 H 1.09002 * 115.55153 * 29.41552 * 18 17 16 34 34 H 1.08998 * 117.49856 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.49861 * 145.02337 * 19 18 17 36 36 H 1.08993 * 117.50251 * 214.97577 * 20 18 17 37 37 H 1.09003 * 117.49715 * 0.02562 * 20 18 17 38 38 H 1.08997 * 109.58260 * 173.14173 * 21 12 11 39 39 H 1.08998 * 109.58377 * 293.57369 * 21 12 11 40 40 H 1.09000 * 109.56070 * 185.55195 * 22 21 12 41 41 H 1.08999 * 109.36232 * 65.50099 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0018 11 6 1.4766 -4.9866 0.0327 12 7 0.5217 -5.0082 -1.0836 13 6 0.5108 -6.0335 -1.9584 14 8 1.2947 -6.9498 -1.8283 15 6 -0.4751 -6.0414 -3.0980 16 8 -0.2899 -7.2230 -3.8800 17 6 -1.1800 -7.3288 -4.9929 18 6 -0.8934 -8.6251 -5.7537 19 6 -0.3932 -8.5028 -7.1944 20 6 -1.8208 -8.9810 -6.9174 21 6 -0.4173 -3.8878 -1.2319 22 6 0.3693 -2.5784 -1.2490 23 1 -0.4849 0.8401 0.0004 24 1 0.6250 -2.5571 0.8898 25 1 2.8886 -3.5919 0.8756 26 1 2.8555 -3.6191 -0.9042 27 1 0.9376 -5.0718 0.9763 28 1 2.1735 -5.8189 -0.0664 29 1 -0.3145 -5.1632 -3.7236 30 1 -1.4900 -6.0236 -2.7006 31 1 -1.0339 -6.4773 -5.6574 32 1 -2.2096 -7.3380 -4.6352 33 1 -0.5018 -9.4460 -5.1529 34 1 -0.2680 -7.4989 -7.6002 35 1 0.3271 -9.2434 -7.5417 36 1 -2.0389 -10.0361 -7.0825 37 1 -2.6348 -8.2915 -7.1412 38 1 -0.9680 -3.9939 -2.1665 39 1 -1.1138 -3.8815 -0.3935 40 1 -0.3232 -1.7368 -1.2594 41 1 0.9964 -2.5452 -2.1399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541050161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:40 Heat of formation + Delta-G solvation = -80.934270 kcal Electronic energy + Delta-G solvation = -20393.876764 eV Core-core repulsion = 17273.663511 eV Total energy + Delta-G solvation = -3120.213253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 4.32 seconds Orbital eigenvalues (eV) -41.20099 -39.33724 -38.36466 -37.25610 -35.34799 -33.22237 -31.85505 -29.88724 -28.05716 -26.97382 -24.61406 -23.83132 -23.24441 -21.83481 -21.46556 -19.84606 -18.71329 -18.21993 -17.43507 -17.35956 -16.98153 -16.49669 -16.00381 -15.80305 -15.20790 -14.90819 -14.77936 -14.57821 -14.28698 -14.04452 -13.44174 -13.33130 -13.24803 -13.11106 -12.82043 -12.43521 -12.37966 -12.15401 -12.06685 -11.93668 -11.48179 -11.37091 -11.26599 -11.01150 -10.96791 -10.64950 -10.51152 -10.38390 -9.58539 -8.07844 -6.20227 1.40457 1.44286 1.53685 1.54259 1.75553 2.44642 2.68387 2.99372 3.18985 3.53203 3.91776 3.96648 4.03467 4.14255 4.19188 4.23959 4.27071 4.35123 4.35986 4.48978 4.53580 4.57209 4.70239 4.73106 4.78611 4.85982 4.98111 5.01868 5.18553 5.21525 5.24956 5.25966 5.42721 5.52150 5.65607 5.99595 6.10178 6.14416 6.39939 6.47129 6.88822 7.13478 7.47370 8.95763 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030059 B = 0.003580 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.291478 B = 7819.625090 C = 8291.177992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.117 3.883 12 N -0.601 5.601 13 C 0.508 3.492 14 O -0.580 6.580 15 C 0.051 3.949 16 O -0.394 6.394 17 C 0.087 3.913 18 C -0.176 4.176 19 C -0.182 4.182 20 C -0.154 4.154 21 C 0.112 3.888 22 C -0.118 4.118 23 H 0.262 0.738 24 H 0.006 0.994 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 -11.765 -10.737 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.005 4.005 12 N -0.335 5.335 13 C 0.296 3.704 14 O -0.461 6.461 15 C -0.028 4.028 16 O -0.313 6.313 17 C 0.011 3.989 18 C -0.194 4.194 19 C -0.219 4.219 20 C -0.191 4.191 21 C -0.010 4.010 22 C -0.156 4.156 23 H 0.071 0.929 24 H 0.024 0.976 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.758 -12.258 -10.627 17.574 hybrid contribution 0.571 1.343 0.265 1.483 sum -6.187 -10.915 -10.362 16.272 Atomic orbital electron populations 1.69935 1.06666 1.27066 1.51276 1.25597 0.95719 1.01795 0.94884 0.85674 0.78955 0.80367 0.77631 1.19915 1.20531 1.20697 1.21561 0.92843 0.92304 1.50488 0.93689 1.18619 0.93057 0.91749 0.93973 1.21857 0.98369 0.94339 1.00604 1.21591 0.91962 0.98195 0.88741 1.48240 1.36362 1.21075 1.27774 1.20852 0.84741 0.81381 0.83378 1.90644 1.42723 1.37475 1.75219 1.22292 0.98764 0.89879 0.91884 1.87958 1.60091 1.41219 1.42041 1.22275 0.93108 0.96646 0.86870 1.22127 1.07269 0.98891 0.91122 1.23182 0.98102 1.03436 0.97212 1.23089 0.93579 1.03207 0.99249 1.21928 0.90995 0.85023 1.03053 1.21742 0.99531 0.96309 0.98063 0.92882 0.97558 0.91792 0.94123 0.90795 0.90506 0.88307 0.87248 0.91781 0.90966 0.88460 0.88164 0.88385 0.87377 0.87210 0.87865 0.90863 0.89813 0.95261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.95 11.30 21.45 0.24 -48.71 16 2 C 0.02 1.01 5.30 84.66 0.45 1.46 16 3 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.53 -28.41 8.56 25.60 0.22 -28.19 16 8 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 9 C 0.04 2.10 2.07 -11.51 -0.02 2.07 16 10 C -0.11 -4.65 5.30 30.67 0.16 -4.49 16 11 C 0.12 4.26 6.44 86.36 0.56 4.81 16 12 N -0.60 -20.75 2.98 -819.73 -2.44 -23.19 16 13 C 0.51 17.75 7.77 87.66 0.68 18.43 16 14 O -0.58 -25.08 15.91 15.99 0.25 -24.83 16 15 C 0.05 1.31 4.77 71.23 0.34 1.65 16 16 O -0.39 -11.35 9.88 -129.94 -1.28 -12.63 16 17 C 0.09 1.72 6.22 71.98 0.45 2.17 16 18 C -0.18 -3.34 6.05 -10.79 -0.07 -3.41 16 19 C -0.18 -2.87 10.18 30.62 0.31 -2.56 16 20 C -0.15 -2.01 10.26 30.62 0.31 -1.70 16 21 C 0.11 3.59 6.31 86.22 0.54 4.14 16 22 C -0.12 -4.98 5.14 30.53 0.16 -4.82 16 23 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 24 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 2.84 7.00 -2.38 -0.02 2.83 16 29 H 0.10 2.17 7.68 -2.38 -0.02 2.15 16 30 H 0.11 2.11 7.95 -2.39 -0.02 2.09 16 31 H 0.06 1.09 7.88 -2.39 -0.02 1.07 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 2.54 5.93 -2.39 -0.01 2.52 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -65.37 331.41 3.88 -61.49 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.99 Total: 14.01 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 4.09 Total: -10.43 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -2.20 Total: -71.89 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.03 Total: -37.46 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -65.37 3.88 -61.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.447 kcal (2) G-P(sol) polarization free energy of solvation -65.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds