Wall clock time and date at job start Mon Mar 30 2020 00:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 N 1.46907 * 109.46973 * 119.99944 * 2 1 3 5 5 C 1.46902 * 110.99453 * 275.58099 * 4 2 1 6 6 C 1.50696 * 109.47275 * 75.77950 * 5 4 2 7 7 H 1.08011 * 120.00041 * 2.53534 * 6 5 4 8 8 C 1.37876 * 120.00292 * 182.54405 * 6 5 4 9 9 N 1.31515 * 119.99516 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47161 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47056 * 119.99482 * 10 8 6 13 13 H 1.48497 * 109.47283 * 239.99185 * 10 8 6 14 14 C 1.46897 * 110.99694 * 151.63036 * 4 2 1 15 15 H 1.08999 * 109.46851 * 171.65509 * 14 4 2 16 16 C 1.52995 * 109.47372 * 51.65169 * 14 4 2 17 17 C 1.53002 * 109.46998 * 291.64952 * 14 4 2 18 18 C 1.50696 * 109.47219 * 294.31480 * 17 14 4 19 19 C 1.38425 * 122.53944 * 95.74312 * 18 17 14 20 20 C 1.33383 * 114.92389 * 179.97438 * 19 18 17 21 21 S 1.75889 * 109.59249 * 0.02562 * 20 19 18 22 22 C 1.33392 * 122.54130 * 275.45806 * 18 17 14 23 23 H 1.09003 * 109.47077 * 308.19543 * 1 2 3 24 24 H 1.08996 * 109.47007 * 68.19143 * 1 2 3 25 25 H 1.09000 * 109.47131 * 188.19560 * 1 2 3 26 26 H 1.08996 * 109.46848 * 239.99474 * 2 1 3 27 27 H 1.09000 * 109.47076 * 170.23003 * 3 2 1 28 28 H 1.09001 * 109.46847 * 290.22782 * 3 2 1 29 29 H 1.08994 * 109.46980 * 50.22682 * 3 2 1 30 30 H 1.08997 * 109.47398 * 315.76973 * 5 4 2 31 31 H 1.09003 * 109.46527 * 195.77241 * 5 4 2 32 32 H 0.97005 * 119.99453 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.47292 * 179.97438 * 16 14 4 34 34 H 1.08999 * 109.47410 * 299.99997 * 16 14 4 35 35 H 1.09001 * 109.47131 * 59.99749 * 16 14 4 36 36 H 1.08999 * 109.46890 * 54.31868 * 17 14 4 37 37 H 1.09003 * 109.47200 * 174.31496 * 17 14 4 38 38 H 1.07998 * 122.53874 * 0.02562 * 19 18 17 39 39 H 1.08002 * 125.21024 * 179.97438 * 20 19 18 40 40 H 1.07997 * 125.20198 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0693 0.2193 2.3502 6 6 0.6739 0.4460 2.8721 7 1 -0.1614 -0.0706 2.4226 8 6 0.4634 1.3130 3.9233 9 7 1.4805 1.9417 4.4708 10 14 -1.2664 1.5946 4.5697 11 1 -2.2266 0.7749 3.7878 12 1 -1.3302 1.2019 6.0005 13 1 -1.6177 3.0311 4.4346 14 6 3.3328 -1.3039 0.9551 15 1 3.7385 -1.6806 1.8940 16 6 4.2831 -0.2556 0.3730 17 6 3.1806 -2.4603 -0.0351 18 6 2.3582 -3.5553 0.5938 19 6 0.9944 -3.6738 0.3882 20 6 0.4180 -4.6987 1.0178 21 16 1.6304 -5.5868 1.9316 22 6 2.8901 -4.4870 1.3865 23 1 -0.3633 0.6355 0.8077 24 1 -0.3633 0.3818 -0.9541 25 1 -0.3633 -1.0172 0.1465 26 1 1.8933 -0.5139 -0.8899 27 1 3.1160 1.4474 0.1744 28 1 1.8261 1.9034 -0.9643 29 1 1.5413 2.0041 0.7898 30 1 2.5009 1.1712 2.0412 31 1 2.6840 -0.2204 3.1358 32 1 1.3324 2.5514 5.2106 33 1 5.2576 -0.7092 0.1921 34 1 3.8774 0.1211 -0.5659 35 1 4.3914 0.5682 1.0784 36 1 2.6822 -2.1035 -0.9364 37 1 4.1656 -2.8488 -0.2941 38 1 0.4393 -2.9887 -0.2355 39 1 -0.6326 -4.9452 0.9739 40 1 3.9342 -4.5544 1.6544 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541221189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:43 Heat of formation + Delta-G solvation = 44.070685 kcal Electronic energy + Delta-G solvation = -19389.231444 eV Core-core repulsion = 16717.191683 eV Total energy + Delta-G solvation = -2672.039760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.08574 -37.25525 -33.12569 -32.29935 -29.94153 -29.07026 -27.42487 -26.17620 -25.81031 -22.79446 -22.16202 -20.82409 -18.56108 -17.94309 -17.19171 -16.34497 -15.55100 -14.85548 -14.55619 -14.21150 -13.66459 -13.19637 -12.96448 -12.71615 -12.51606 -12.28959 -12.11190 -11.91551 -11.67516 -11.31725 -11.27619 -11.23939 -10.99406 -10.90761 -10.61590 -10.46799 -10.33563 -10.21720 -10.08084 -9.75405 -9.28070 -8.97458 -8.37438 -8.33045 -7.92286 -7.04097 -5.94803 -3.93003 1.42575 2.06278 2.36469 3.20281 3.33404 3.41553 3.45714 4.47338 4.93964 5.19969 5.37082 5.39881 5.49125 5.64877 5.68932 5.78027 5.84098 5.92901 5.99091 6.06479 6.10720 6.15189 6.24180 6.36114 6.43433 6.47685 6.61020 6.66504 6.71572 6.84003 6.87192 6.97513 7.13783 7.23973 7.43629 7.52956 7.95523 8.25897 8.35807 8.68868 9.15172 9.69412 11.15596 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.007134 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.513481 B = 3923.950833 C = 4719.297764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.092 3.908 3 C -0.192 4.192 4 N -0.517 5.517 5 C 0.185 3.815 6 C -0.493 4.493 7 H 0.070 0.930 8 C 0.052 3.948 9 N -0.901 5.901 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.287 1.287 14 C 0.085 3.915 15 H 0.074 0.926 16 C -0.186 4.186 17 C -0.054 4.054 18 C -0.063 4.063 19 C -0.099 4.099 20 C -0.216 4.216 21 S 0.055 5.945 22 C -0.221 4.221 23 H 0.082 0.918 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.012 0.988 31 H 0.017 0.983 32 H 0.258 0.742 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -9.796 -9.754 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 C -0.250 4.250 4 N -0.241 5.241 5 C 0.060 3.940 6 C -0.532 4.532 7 H 0.088 0.912 8 C -0.148 4.148 9 N -0.542 5.542 10 Si 0.717 3.283 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.213 1.213 14 C -0.025 4.025 15 H 0.092 0.908 16 C -0.245 4.245 17 C -0.094 4.094 18 C -0.076 4.076 19 C -0.129 4.129 20 C -0.351 4.351 21 S 0.318 5.682 22 C -0.356 4.356 23 H 0.101 0.899 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.291 -11.356 -8.543 14.394 hybrid contribution -0.328 2.236 -0.401 2.295 sum 1.962 -9.121 -8.944 12.924 Atomic orbital electron populations 1.22015 0.95252 1.02126 1.00589 1.21395 0.95682 0.92056 0.92588 1.22828 1.02146 0.99029 1.01026 1.62459 1.21660 1.35142 1.04829 1.19898 0.97501 0.90132 0.86512 1.21357 0.93515 1.23487 1.14796 0.91215 1.24976 0.96600 0.96365 0.96908 1.69970 1.29893 1.29414 1.24896 0.86582 0.85203 0.77679 0.78820 1.19710 1.21249 1.21329 1.21683 0.90266 0.93027 0.97482 0.90777 1.22777 0.99382 1.00590 1.01751 1.20493 0.97897 0.93004 0.98042 1.18748 0.94098 0.96009 0.98725 1.20043 0.94116 0.97314 1.01454 1.25416 1.02538 1.02064 1.05108 1.83975 0.99967 1.32795 1.51465 1.25240 1.02371 1.01490 1.06494 0.89902 0.95031 0.93160 0.92845 0.91962 0.94652 0.90394 0.97014 0.96467 0.93275 0.93639 0.91972 0.91904 0.91079 0.91604 0.84448 0.82558 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.45 37.16 0.31 -2.29 16 2 C 0.09 1.65 2.23 -67.71 -0.15 1.50 16 3 C -0.19 -3.55 7.14 37.16 0.27 -3.28 16 4 N -0.52 -10.30 4.05 -220.15 -0.89 -11.19 16 5 C 0.18 4.56 3.71 -4.98 -0.02 4.54 16 6 C -0.49 -13.28 7.40 -34.44 -0.26 -13.54 16 7 H 0.07 1.88 5.84 -52.48 -0.31 1.57 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.09 1.45 2.25 -67.72 -0.15 1.30 16 15 H 0.07 1.38 7.77 -51.93 -0.40 0.97 16 16 C -0.19 -2.88 7.37 37.16 0.27 -2.60 16 17 C -0.05 -0.77 4.91 -27.88 -0.14 -0.91 16 18 C -0.06 -0.97 4.80 -106.25 -0.51 -1.48 16 19 C -0.10 -1.52 9.96 -41.21 -0.41 -1.93 16 20 C -0.22 -3.11 11.23 29.04 0.33 -2.79 16 21 S 0.06 0.77 23.34 -107.50 -2.51 -1.74 16 22 C -0.22 -3.20 10.99 29.04 0.32 -2.88 16 23 H 0.08 1.77 5.51 -51.93 -0.29 1.48 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.90 7.25 -51.93 -0.38 0.53 16 26 H 0.05 0.86 5.45 -51.93 -0.28 0.58 16 27 H 0.06 1.12 3.97 -51.93 -0.21 0.91 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.71 6.54 -51.93 -0.34 1.37 16 30 H 0.01 0.31 4.78 -51.93 -0.25 0.07 16 31 H 0.02 0.47 7.70 -51.93 -0.40 0.07 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.92 5.52 -51.93 -0.29 0.63 16 35 H 0.06 1.10 6.42 -51.93 -0.33 0.77 16 36 H 0.07 0.98 6.20 -51.93 -0.32 0.66 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.14 2.06 7.16 -52.49 -0.38 1.69 16 39 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -28.56 314.53 -9.02 -37.58 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.84 Total: 2.73 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -0.23 Total: -23.01 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.15 Total: -36.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.56 -9.02 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541221189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.646 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds