Wall clock time and date at job start Mon Mar 30 2020 00:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 N 1.46907 * 109.46973 * 119.99944 * 2 1 3 5 5 C 1.46902 * 110.99453 * 275.58099 * 4 2 1 6 6 C 1.50696 * 109.47275 * 75.77950 * 5 4 2 7 7 H 1.08011 * 120.00041 * 2.53534 * 6 5 4 8 8 C 1.37876 * 120.00292 * 182.54405 * 6 5 4 9 9 N 1.31515 * 119.99516 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47161 * 359.97438 * 10 8 6 12 12 H 1.48509 * 109.47056 * 119.99482 * 10 8 6 13 13 H 1.48497 * 109.47283 * 239.99185 * 10 8 6 14 14 C 1.46897 * 110.99694 * 151.63036 * 4 2 1 15 15 H 1.08999 * 109.46851 * 171.65509 * 14 4 2 16 16 C 1.52995 * 109.47372 * 51.65169 * 14 4 2 17 17 C 1.53002 * 109.46998 * 291.64952 * 14 4 2 18 18 C 1.50696 * 109.47219 * 294.31480 * 17 14 4 19 19 C 1.38425 * 122.53944 * 95.74312 * 18 17 14 20 20 C 1.33383 * 114.92389 * 179.97438 * 19 18 17 21 21 S 1.75889 * 109.59249 * 0.02562 * 20 19 18 22 22 C 1.33392 * 122.54130 * 275.45806 * 18 17 14 23 23 H 1.09003 * 109.47077 * 308.19543 * 1 2 3 24 24 H 1.08996 * 109.47007 * 68.19143 * 1 2 3 25 25 H 1.09000 * 109.47131 * 188.19560 * 1 2 3 26 26 H 1.08996 * 109.46848 * 239.99474 * 2 1 3 27 27 H 1.09000 * 109.47076 * 170.23003 * 3 2 1 28 28 H 1.09001 * 109.46847 * 290.22782 * 3 2 1 29 29 H 1.08994 * 109.46980 * 50.22682 * 3 2 1 30 30 H 1.08997 * 109.47398 * 315.76973 * 5 4 2 31 31 H 1.09003 * 109.46527 * 195.77241 * 5 4 2 32 32 H 0.97005 * 119.99453 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.47292 * 179.97438 * 16 14 4 34 34 H 1.08999 * 109.47410 * 299.99997 * 16 14 4 35 35 H 1.09001 * 109.47131 * 59.99749 * 16 14 4 36 36 H 1.08999 * 109.46890 * 54.31868 * 17 14 4 37 37 H 1.09003 * 109.47200 * 174.31496 * 17 14 4 38 38 H 1.07998 * 122.53874 * 0.02562 * 19 18 17 39 39 H 1.08002 * 125.21024 * 179.97438 * 20 19 18 40 40 H 1.07997 * 125.20198 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0693 0.2193 2.3502 6 6 0.6739 0.4460 2.8721 7 1 -0.1614 -0.0706 2.4226 8 6 0.4634 1.3130 3.9233 9 7 1.4805 1.9417 4.4708 10 14 -1.2664 1.5946 4.5697 11 1 -2.2266 0.7749 3.7878 12 1 -1.3302 1.2019 6.0005 13 1 -1.6177 3.0311 4.4346 14 6 3.3328 -1.3039 0.9551 15 1 3.7385 -1.6806 1.8940 16 6 4.2831 -0.2556 0.3730 17 6 3.1806 -2.4603 -0.0351 18 6 2.3582 -3.5553 0.5938 19 6 0.9944 -3.6738 0.3882 20 6 0.4180 -4.6987 1.0178 21 16 1.6304 -5.5868 1.9316 22 6 2.8901 -4.4870 1.3865 23 1 -0.3633 0.6355 0.8077 24 1 -0.3633 0.3818 -0.9541 25 1 -0.3633 -1.0172 0.1465 26 1 1.8933 -0.5139 -0.8899 27 1 3.1160 1.4474 0.1744 28 1 1.8261 1.9034 -0.9643 29 1 1.5413 2.0041 0.7898 30 1 2.5009 1.1712 2.0412 31 1 2.6840 -0.2204 3.1358 32 1 1.3324 2.5514 5.2106 33 1 5.2576 -0.7092 0.1921 34 1 3.8774 0.1211 -0.5659 35 1 4.3914 0.5682 1.0784 36 1 2.6822 -2.1035 -0.9364 37 1 4.1656 -2.8488 -0.2941 38 1 0.4393 -2.9887 -0.2355 39 1 -0.6326 -4.9452 0.9739 40 1 3.9342 -4.5544 1.6544 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541221189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:42 Heat of formation + Delta-G solvation = 28.314686 kcal Electronic energy + Delta-G solvation = -19389.914675 eV Core-core repulsion = 16717.191683 eV Total energy + Delta-G solvation = -2672.722992 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49227 -38.51177 -34.91344 -33.95708 -31.43585 -30.47304 -28.78997 -28.01834 -27.14112 -24.25878 -23.77405 -22.21634 -19.90791 -19.25956 -18.43301 -18.26867 -17.05289 -16.52110 -16.01818 -15.82976 -15.13978 -14.51776 -14.24844 -14.13279 -14.05804 -13.63954 -13.58032 -13.28198 -13.10329 -12.99620 -12.83520 -12.65527 -12.54608 -12.43484 -12.20279 -12.03303 -11.95190 -11.70729 -11.47118 -11.24972 -11.04794 -10.77395 -10.48050 -9.49854 -9.04472 -8.68163 -8.08484 -6.13508 0.30576 0.97094 1.25633 1.38677 1.40819 1.52262 2.05211 2.44353 3.23111 3.43550 4.01580 4.21346 4.26510 4.29616 4.43243 4.48803 4.58286 4.67389 4.74088 4.76246 4.83058 4.94504 4.94902 5.00424 5.09981 5.15516 5.26056 5.28807 5.30270 5.39837 5.46417 5.49067 5.65254 5.73800 5.75368 5.82881 5.88317 6.28279 6.64021 6.91002 7.04197 7.53553 9.00957 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.007134 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.513481 B = 3923.950833 C = 4719.297764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 C -0.185 4.185 4 N -0.521 5.521 5 C 0.204 3.796 6 C -0.493 4.493 7 H 0.069 0.931 8 C -0.002 4.002 9 N -0.938 5.938 10 Si 0.950 3.050 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.283 1.283 14 C 0.083 3.917 15 H 0.051 0.949 16 C -0.178 4.178 17 C -0.043 4.043 18 C -0.080 4.080 19 C -0.116 4.116 20 C -0.225 4.225 21 S 0.067 5.933 22 C -0.231 4.231 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.034 0.966 30 H -0.005 1.005 31 H -0.022 1.022 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.174 0.826 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -10.836 -11.572 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 C -0.243 4.243 4 N -0.245 5.245 5 C 0.078 3.922 6 C -0.532 4.532 7 H 0.087 0.913 8 C -0.199 4.199 9 N -0.581 5.581 10 Si 0.777 3.223 11 H -0.188 1.188 12 H -0.213 1.213 13 H -0.209 1.209 14 C -0.027 4.027 15 H 0.069 0.931 16 C -0.237 4.237 17 C -0.083 4.083 18 C -0.092 4.092 19 C -0.146 4.146 20 C -0.359 4.359 21 S 0.329 5.671 22 C -0.366 4.366 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.012 0.988 31 H -0.004 1.004 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.191 0.809 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.915 -12.412 -10.381 16.294 hybrid contribution -0.182 2.500 0.143 2.510 sum 1.733 -9.913 -10.238 14.356 Atomic orbital electron populations 1.21937 0.95361 1.01523 1.00747 1.21505 0.95622 0.91878 0.92679 1.22727 1.01752 0.98965 1.00857 1.62335 1.23873 1.33878 1.04366 1.19479 0.95472 0.89899 0.87358 1.21672 0.94488 1.22662 1.14355 0.91269 1.25764 1.00179 0.96474 0.97474 1.70097 1.31927 1.30411 1.25625 0.85608 0.81002 0.77704 0.78002 1.18752 1.21252 1.20898 1.21735 0.89035 0.94258 0.97638 0.93076 1.22657 1.00575 0.99222 1.01202 1.20427 0.99405 0.91425 0.97080 1.18926 0.94319 0.96597 0.99385 1.20191 0.94428 0.97868 1.02146 1.25735 1.03615 1.01887 1.04708 1.83923 0.99669 1.32401 1.51064 1.25548 1.03389 1.01453 1.06167 0.93449 0.92178 0.92998 0.89634 0.91810 0.91935 0.94683 0.98755 1.00364 0.93375 0.90875 0.90733 0.94822 0.90042 0.88997 0.84305 0.80863 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.45 71.98 0.61 -4.23 16 2 C 0.09 3.15 2.23 44.91 0.10 3.25 16 3 C -0.18 -6.67 7.14 71.98 0.51 -6.16 16 4 N -0.52 -20.60 4.05 -850.41 -3.44 -24.04 16 5 C 0.20 10.43 3.71 85.56 0.32 10.75 16 6 C -0.49 -27.20 7.40 25.60 0.19 -27.01 16 7 H 0.07 3.77 5.84 -2.91 -0.02 3.75 16 8 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 9 N -0.94 -56.87 13.29 21.45 0.28 -56.58 16 10 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 11 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 C 0.08 2.73 2.25 44.92 0.10 2.83 16 15 H 0.05 1.91 7.77 -2.39 -0.02 1.89 16 16 C -0.18 -5.21 7.37 71.98 0.53 -4.68 16 17 C -0.04 -1.12 4.91 29.85 0.15 -0.97 16 18 C -0.08 -2.28 4.80 -20.92 -0.10 -2.38 16 19 C -0.12 -3.36 9.96 21.22 0.21 -3.15 16 20 C -0.22 -6.10 11.23 66.72 0.75 -5.35 16 21 S 0.07 1.75 23.34 -56.49 -1.32 0.43 16 22 C -0.23 -6.30 10.99 66.72 0.73 -5.56 16 23 H 0.05 2.00 5.51 -2.39 -0.01 1.98 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 1.77 7.25 -2.39 -0.02 1.76 16 26 H 0.09 2.45 5.45 -2.39 -0.01 2.44 16 27 H 0.06 2.26 3.97 -2.39 -0.01 2.25 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.55 6.54 -2.39 -0.02 1.54 16 30 H -0.01 -0.28 4.78 -2.39 -0.01 -0.29 16 31 H -0.02 -1.26 7.70 -2.39 -0.02 -1.28 16 32 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 1.99 5.52 -2.39 -0.01 1.98 16 35 H 0.03 1.17 6.42 -2.39 -0.02 1.16 16 36 H 0.08 1.94 6.20 -2.39 -0.01 1.92 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.14 3.90 7.16 -2.91 -0.02 3.87 16 39 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 40 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -62.99 314.53 3.14 -59.85 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.03 Total: 15.58 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 4.56 Total: -42.36 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.16 Total: -80.62 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.32 Total: 0.43 kcal Total: -62.99 3.14 -59.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541221189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.161 kcal (2) G-P(sol) polarization free energy of solvation -62.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds